mRNA_E-siliculosus-1a_F_contig1122.816.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1122.816.1
Unique NamemRNA_E-siliculosus-1a_F_contig1122.816.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1122.816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1122contigE-siliculosus-1a_F_contig1122:30223..30644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size321
Model size422
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1122.816.1prot_E-siliculosus-1a_F_contig1122.816.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1122 30322..30642 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927627.7826865-UTR-E-siliculosus-1a_F_contig1122:30222..303211622927627.7826865-UTR-E-siliculosus-1a_F_contig1122:30222..30321Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1122 30223..30321 +
1696318617.0205839-UTR-E-siliculosus-1a_F_contig1122:30222..303211696318617.0205839-UTR-E-siliculosus-1a_F_contig1122:30222..30321Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1122 30223..30321 +
1622927627.8078384-UTR-E-siliculosus-1a_F_contig1122:30642..306441622927627.8078384-UTR-E-siliculosus-1a_F_contig1122:30642..30644Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1122 30643..30644 +
1696318617.0391805-UTR-E-siliculosus-1a_F_contig1122:30642..306441696318617.0391805-UTR-E-siliculosus-1a_F_contig1122:30642..30644Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1122 30643..30644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927627.7932951-CDS-E-siliculosus-1a_F_contig1122:30321..306421622927627.7932951-CDS-E-siliculosus-1a_F_contig1122:30321..30642Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 30322..30642 +
1696318617.0298002-CDS-E-siliculosus-1a_F_contig1122:30321..306421696318617.0298002-CDS-E-siliculosus-1a_F_contig1122:30321..30642Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 30322..30642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1122.816.1

>prot_E-siliculosus-1a_F_contig1122.816.1 ID=prot_E-siliculosus-1a_F_contig1122.816.1|Name=mRNA_E-siliculosus-1a_F_contig1122.816.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=107bp
MRCSHRQQQQQQQTAAKTTKKAKECEYVDFFPTQFRACRTAAPSSNKRRS
LHLGSLHATHEAKQDKNNIAEKTKEGRGTACTTAVSPRVLLAVATTTTFR
VAHTLR*
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mRNA from alignment at E-siliculosus-1a_F_contig1122:30223..30644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1122.816.1 ID=mRNA_E-siliculosus-1a_F_contig1122.816.1|Name=mRNA_E-siliculosus-1a_F_contig1122.816.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=422bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1122:30223..30644+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCGATCACGCCGCGTACATTCTTCGGTCTAAAAGCCCCAAATGAACAAA
GAAAAAAAGAGAATATTGGCGCACGTTCGACTGATCGTTGTACAAAGAGA
TGAGGTGTTCCCACCGACAACAACAACAGCAACAACAGACTGCTGCAAAA
ACAACAAAGAAGGCAAAAGAGTGTGAATATGTCGATTTCTTCCCCACACA
ATTTCGCGCCTGTCGAACGGCAGCACCCAGCTCCAACAAACGGCGCAGTC
TTCACCTCGGGAGCTTACATGCTACTCATGAAGCAAAACAAGACAAGAAC
AATATCGCAGAAAAAACAAAGGAAGGTCGAGGTACCGCATGCACCACAGC
AGTATCACCGCGAGTCCTACTCGCCGTTGCGACCACGACAACATTTAGGG
TTGCACACACCCTTCGGTGAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1122:30223..30644+

>mRNA_E-siliculosus-1a_F_contig1122.816.1 ID=mRNA_E-siliculosus-1a_F_contig1122.816.1|Name=mRNA_E-siliculosus-1a_F_contig1122.816.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1122:30223..30644+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGTGTTCCCACCGACAACAACAACAGCAACAACAGACTGCTGCAAA
AACAACAAAGAAGGCAAAAGAGTGTGAATATGTCGATTTCTTCCCCACAC
AATTTCGCGCCTGTCGAACGGCAGCACCCAGCTCCAACAAACGGCGCAGT
CTTCACCTCGGGAGCTTACATGCTACTCATGAAGCAAAACAAGACAAGAA
CAATATCGCAGAAAAAACAAAGGAAGGTCGAGGTACCGCATGCACCACAG
CAGTATCACCGCGAGTCCTACTCGCCGTTGCGACCACGACAACATTTAGG
GTTGCACACACCCTTCGGTGAATGAGGTGTTCCCACCGACAACAACAACA
GCAACAACAGACTGCTGCAAAAACAACAAAGAAGGCAAAAGAGTGTGAAT
ATGTCGATTTCTTCCCCACACAATTTCGCGCCTGTCGAACGGCAGCACCC
AGCTCCAACAAACGGCGCAGTCTTCACCTCGGGAGCTTACATGCTACTCA
TGAAGCAAAACAAGACAAGAACAATATCGCAGAAAAAACAAAGGAAGGTC
GAGGTACCGCATGCACCACAGCAGTATCACCGCGAGTCCTACTCGCCGTT
GCGACCACGACAACATTTAGGGTTGCACACACCCTTCGGTGA
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