mRNA_E-siliculosus-1a_F_contig1122.815.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1122.815.1 vs. uniprot
Match: D7FVL7_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL7_ECTSI) HSP 1 Score: 1169 bits (3025), Expect = 0.000e+0 Identity = 745/934 (79.76%), Postives = 749/934 (80.19%), Query Frame = 1
Query: 1 MQTLPIWGFAAAALLAAQWIEGAGGVSSWYLETQQVGLEALYNATGGEQWASSSGWRDATLGVCDWYGVVCDSDGRNVTGLALAGNGLTGNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRNGLSYFPTSWGTEASSLRHLSLQQNEISGTLPSAWLEVVSSTSYPLVHSREVSAWLPELRTLALGGNAITMPVYHALQSVIGFASLQVLDLSNNSLDGIVGQSFELHSCAGESLDACDSITVKTGTSNLAILLLSSNSIEGELEAHSFPRSLSALTVSDNLLTGPIPEDCAQLSVFLADGNEGLNDTSLPSFASYANSSDVVTRHNNMSCPVISGQDTAGRGVHLSLDPSYIGYSHCVCIKGMEGNAEDGCQACPEGTYRGAADLFATRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRYLDEPAETCTDCQAGTYKTTVGNDVSLCVPCPEGTYSPQTGGTSSDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYSEDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSSLGGSHECETLLANSRKWLAIYLAVGASTLAGICIVYYTWQKKVHKKKKLKVDSRTETPLKMTGAKRKAHMWAVFFHTLETIDVITGNALFAYLLDIGAIQGVMQFIYWLVVSLGVALNVFRLYMIIWMKWMLVNVSVAERVDKEGKKVLVVYMPANQYLPGRRRSDRRIMTPDDAKMVLELVKILKHLQINKFKVQLAVVMDLPLTILNLWLLWMVDPELIKSALFLTSLIIAVFSAGKISTLIEYHLELRQRKRKLERLLLLELRSSRNGYDDDVIVEDNSRNDTQEASTGDECYEQGYPETLLEAHGNSMRNIATTETEGS 2802
MQTLPI GFAAAALLAAQWI GAGGVSS YLETQQVGLEALYNATGGEQWASSSGWRDATLGVCDWYGVVCDSDGRNVTGLALAGNGL GNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRN LSYFPTSWGTEASSLRHLSLQQNEISG IEGELE HSFPRSLSALTVSDNLLTGP+PEDCAQLSVFLADGNEGLNDTSLPSFASYANSSDVVTRHNNMSCPVISGQDTAGRGVHLSLDPSY+GYSHCVCIKGM+GNAEDGCQACPEGTYRGAADLFATRSXXXXXXXXXXX XX GRYLDEPAETCTDCQAGTYKTTVGNDVSLCVPCPEGTYSPQTGGTSSD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FSSLGGSHECETLLANSRKWLAIYLAVGASTLAGICIVYYTWQKKVHKKKKLKVDSRTETPLKMTGAKRKAHMWAVFFHTLETIDVITGNALFAYLLDIGAIQGVMQFIYWL VSLGVALNVFRLYMIIWMKWMLVNVSVAERVDKEGKKVLVVYMPANQYLPGRRRSDRRIMTPDDAKMVLELVKILKHLQINKFKVQLAVVMDLPLTILNLWLLWMVDPELIKSALFLTSLIIAVFSAGKISTLIEYHLELRQRKRKLERLLLLELRSSRNGYDDDVIVEDNSRNDTQE GDECYEQGYPETLLEAHG+ MRNIATTETE S
Sbjct: 1 MQTLPILGFAAAALLAAQWIRGAGGVSSSYLETQQVGLEALYNATGGEQWASSSGWRDATLGVCDWYGVVCDSDGRNVTGLALAGNGLAGNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRNDLSYFPTSWGTEASSLRHLSLQQNEISG-------------------------------------------------------------------------------------------------------------IEGELETHSFPRSLSALTVSDNLLTGPVPEDCAQLSVFLADGNEGLNDTSLPSFASYANSSDVVTRHNNMSCPVISGQDTAGRGVHLSLDPSYLGYSHCVCIKGMQGNAEDGCQACPEGTYRGAADLFATRSXXXXXXXXXXXTTGSETVSXXKCEPGFYDTLGGVGDGVPSCSACPSGSVASDSVGAISVAACSCPAGRYLDEPAETCTDCQAGTYKTTVGNDVSLCVPCPEGTYSPQTGGTSSDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDG-FSSLGGSHECETLLANSRKWLAIYLAVGASTLAGICIVYYTWQKKVHKKKKLKVDSRTETPLKMTGAKRKAHMWAVFFHTLETIDVITGNALFAYLLDIGAIQGVMQFIYWLAVSLGVALNVFRLYMIIWMKWMLVNVSVAERVDKEGKKVLVVYMPANQYLPGRRRSDRRIMTPDDAKMVLELVKILKHLQINKFKVQLAVVMDLPLTILNLWLLWMVDPELIKSALFLTSLIIAVFSAGKISTLIEYHLELRQRKRKLERLLLLELRSSRNGYDDDVIVEDNSRNDTQE---GDECYEQGYPETLLEAHGDLMRNIATTETEVS 821
BLAST of mRNA_E-siliculosus-1a_F_contig1122.815.1 vs. uniprot
Match: D7FVL6_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL6_ECTSI) HSP 1 Score: 295 bits (755), Expect = 4.900e-81 Identity = 208/518 (40.15%), Postives = 268/518 (51.74%), Query Frame = 1
Query: 34 AALLAAQWIEGAGGVSSWYLETQQVGLEALYNATGGEQWASSSGWRDATLGVCDWYGVVCDSDGRNVTGLALAGNGLTGNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRNGLSYFPTSWGTEASSLRHLSLQQNEISGTLPSAWLEVVSSTSYPLVHSREVSAWLPELRTLALGGNAITMPVYHALQSVIGFASLQVLDLSNNSLDGIVGQSFELHSCAGESLDACDSITVKTGTSNLAILLLSSNSIEGELEAHSFPRSLSALTVSDN-LLTGPIPEDCAQLSVFLADGNEGLNDTSLPSFASYANSS------DVVTRHNNMSCPVISGQDTAGRGVH-LSLDPSYIGYSHCVCIKGMEGNAEDG-CQACPEGTYRGAA---DLFATRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRYLDEPAETCTDCQAGTYKTTVGNDVSLCVPCPEGTYSPQTGGTS 1551
AA+ A ++ S++ E Q GLEALY AT G+ WA+S+GW D +LGVC WYGV CDS+G NVTG++L+ N L G++SEA +L +V+SL +DLSDN+L GPV L G+MP++E LDLS N LSYFP +WG+ AS LRHLSLQ N ISG+ P+AWL V S+SYPLVH + S WLPELR+L LGGN + Y ALQ+V + SLQ LDLS+N+L G V + L+ T N R + L VSDN G +P ++L + A+ N GL+ LP F ++ + T H+ CP + +A V ++LD +Y GYS C C G++G+ D C CP G+YR D A XXXXXXXXXXXXXX GR + + C C AGTYK GN V LC+PC GTYS G TS
Sbjct: 16 AAVATAGYLCPTAFASAYTEEVQIAGLEALYYATNGQDWANSTGWSDDSLGVCSWYGVTCDSEGGNVTGISLSNNLLVGDVSEATDLTNVISLEEMDLSDNQLSGPVPLNLGMMPNMETLDLSGNELSYFPAAWGSGASMLRHLSLQNNRISGSFPAAWLNVTDSSSYPLVHLQPSSPWLPELRSLLLGGNNMNATGYVALQAVANWRSLQTLDLSDNALTGSVDDALALYYYWSPPR--------VVDTDN---------------------RRIDLLDVSDNGNFVGEVPASYSELLILFAE-NTGLSGLDLPDFIDATTTTAAGAWNEKSTVHDLFVCPAF--KPSADENVAAVTLDHAYDGYSVCTCNDGLQGSGGDSECSECPLGSYRNLEKEDDPLA--EGVCSPCPSNSTTMQNGSWLKSQCVCAINFYDEQGGADSEPSXXXXXXXXXXXXXXAVNIASCECEPGRIFNTTSRACESCVAGTYKPAYGNHVGLCLPCSAGTYSDTVGATS 499
BLAST of mRNA_E-siliculosus-1a_F_contig1122.815.1 vs. uniprot
Match: A0A7S3DKI7_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DKI7_9EUKA) HSP 1 Score: 77.8 bits (190), Expect = 9.090e-11 Identity = 61/212 (28.77%), Postives = 101/212 (47.64%), Query Frame = 1
Query: 580 LRTLALGGNAITMPVYHALQSVIGFASLQVLDLSNNSLDGIVGQSFELHSCAGESLDACDSITVKTGT---------SNLAILLLSSNSIEGELEAHSFPRSLSALTVSDNLLTGPIPEDCAQLSVFLADGNEGLNDT-SLPSFASYANSSDVVTRHN--NMSCPVISGQDTAGRGVHLSLDPSYIGYSHCVCIKGMEGNAEDGCQACPEGT 1179
++ L L N + + LQ + + L ++N LDG + ++ + + + D+ V+TG NL +L + N I G+L + S+ +L L +++N +TGPIP+D + + GN + T SLP F + VTR+ N SCP I+ + + V + +DP Y+ Y HC C +G G C CP+GT
Sbjct: 151 IKFLFLNNNPFNTVIGNVLQRLRPIPEILQLVIANCGLDGDI-----MNQDLSKRVFSDDTAAVETGVLFFSFVSMFQNLTLLNAADNDISGQLPSFSYFPNLGTLDMTNNKMTGPIPDDYVAVQLLKLVGNYLRSPTNSLPDFLT--TDLGTVTRNTTANFSCPEITAK---AQSVSVGIDPFYLDYLHCTCDRGYYGQPPV-CYTCPQGT 351
BLAST of mRNA_E-siliculosus-1a_F_contig1122.815.1 vs. uniprot
Match: A0A444F628_ENSVE (Protein kinase domain-containing protein n=4 Tax=Musaceae TaxID=4637 RepID=A0A444F628_ENSVE) HSP 1 Score: 70.1 bits (170), Expect = 2.030e-8 Identity = 85/298 (28.52%), Postives = 141/298 (47.32%), Query Frame = 1
Query: 112 LEALYNATGGEQWASSSGWRDATLGVCDWYGVVCDSDGRNVTGLALAGNGLTGNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRNGLSYFPTSWGTEASSLRHLSLQQNEISG-TLPSAWLEVVSSTSYPLVHSREVSAWLPELRTLALGG--------NAITMPVYHALQSVIGFASLQVLD-LSNNSLDGIVGQSFELHSCAGESL-----DACDSITVKTGTSNLAILLLSSNSIEGELEAHSFP-RSLSALTVSDNLLTGPIPEDCAQLSVFLADGNEGL 957
++AL A G ++ + W + W GV C SDGR VT + + L G+L+ V ++ SL+ ++L N L GP+ GL L+V+ L N S P + + SSL+ + L N ++ +LP++ + + ++ +S VS LP+ A G N ++ PV A + F SL + + L + L+G G +F + A E L D + +G +NL L L N + G + +SLS +T+++NLL GP+P ++V L G+E
Sbjct: 41 MQALATALGADE---ALDWSASADPCTAWVGVAC-SDGR-VTAIQVGNRSLAGSLTADVR--NLTSLVRLELQYNRLAGPLPSLAGLA-SLQVILLHGNLFSSIPPDFFSGLSSLQAVFLDYNPLAAWSLPASLSDAAALVNFS-ANSANVSGPLPDFLATAFPGLDHLGLAFNFLSGPVASAFAAA-PFRSLWLNNQLGPSRLNG--GIAFVENMTALEELWLQSNDFSGPLPDFSGLTNLRNLELRDNQLTGVVPRSLIELKSLSKVTLTNNLLQGPVPVFPDSVTVDLVPGSESF 326
BLAST of mRNA_E-siliculosus-1a_F_contig1122.815.1 vs. uniprot
Match: A0A7S4JEH9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JEH9_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 3.810e-8 Identity = 40/104 (38.46%), Postives = 52/104 (50.00%), Query Frame = 1
Query: 112 LEALYNATGGEQWASSSGWRDATLGVCD---WYGVVCDSDGRNVTGLALAGNGLTGNLSEAV--ELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRN 408
L L AT G W W T +CD W+GV C+ D ++ + L NGL G L ++ + SL +DLS NEL GP+ F MP LE + LSRN
Sbjct: 582 LRQLDAATNGANWTKKWSWEGGTANICDISLWHGVTCNWDNTSIVNITLRANGLRGMLPPSLLDHTAALSSLQVLDLSHNELSGPLPSDFTAMPILEEIILSRN 685
BLAST of mRNA_E-siliculosus-1a_F_contig1122.815.1 vs. uniprot
Match: V6LM33_9EUKA (Cyst wall protein D n=1 Tax=Spironucleus salmonicida TaxID=348837 RepID=V6LM33_9EUKA) HSP 1 Score: 63.5 bits (153), Expect = 1.760e-7 Identity = 49/182 (26.92%), Postives = 91/182 (50.00%), Query Frame = 1
Query: 112 LEALYNATGGE-QWASSSGWRDATLGVCDWYGVVCDSDGRNVTGLALAGNGLTGNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRNGLSYFPTSWGTEASSLRHLSLQQNEISGTLPSAWLEVVSSTSYPLVHSREVSAWLP--ELRTLALGGNAITMPVYHALQSVI 648
L + + T G+ W +S+ W+ ++ C W+GV CD+ R+V G++L GNGLTG LSE++E L + DLS+N + + LE+ + + +++ + +L+ L + N I G +P L++ S + E+ + E++ L+ G N + Y+A + V+
Sbjct: 11 LTSFFADTNGKISWKNSTNWQ-TSIDFCSWHGVTCDT-ARDVVGISLRGNGLTGRLSESLEFLPKLKFL--DLSNNTFETKLK-AICAVRSLEIFSIQDSNVNFELPDCLCDMPNLKVLDVTGNNIIGNIPKC-LKLDSL----FIECNEIMDEIENNEIKELSFGCNTDVIVDYNAFKGVL 182
BLAST of mRNA_E-siliculosus-1a_F_contig1122.815.1 vs. uniprot
Match: A0A059CX42_EUCGR (Uncharacterized protein n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CX42_EUCGR) HSP 1 Score: 66.6 bits (161), Expect = 2.380e-7 Identity = 59/180 (32.78%), Postives = 81/180 (45.00%), Query Frame = 1
Query: 190 CDWYGVVCDSDGRNVTGLALAGN-----GLTGNLSEAVELFDVLSLISIDLSDNELVGPVA--LGFGLMPDLEVLDLSRNGLSYFPTSWGTEASSLRHLSLQQNEISGTLPSAWLEVVSSTSYPLVHSREVSAWLPELRTLALGGNAI-TMPVYHALQSVIGFASLQVLDLSNNSLDGIV 705
C W GV C+ VT L L+ + G A L L S+DLSDN L G +A + + LEVLDLS N L ++ S S+RHL LQ + +SGTL V+ L L + NA+ + + + SV + L+VLDLS+N LD I+
Sbjct: 11 CSWEGVECNPTTGRVTQLRLSYSRYNRFGSNTWYLNASLLLPFEELKSLDLSDNYLGGWIAPEVNHARLSQLEVLDLSSNFLDHYIISVLGTIPSIRHLFLQDSNLSGTL-------------------HVNGGFSNLMELDISYNAVDVVAIVEGIVSVFTLSKLEVLDLSSNFLDHII 171
BLAST of mRNA_E-siliculosus-1a_F_contig1122.815.1 vs. uniprot
Match: A0A5N6LS38_9ASTR (LRRNT_2 domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LS38_9ASTR) HSP 1 Score: 63.9 bits (154), Expect = 1.160e-6 Identity = 70/251 (27.89%), Postives = 105/251 (41.83%), Query Frame = 1
Query: 241 LALAGNGLTGNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRNGLS--YFPTSWGTEASSLRHLSLQQNEISGTLPSAWLEVVSSTSYPLVHSREVSAWLPE-LRTLALGGNAITMPVYHALQSVIGFASLQVLDLSNNSLDGIVGQSFE------------LHSCAGES----LDACDSITVKTGTSNLAILLLSSNSIEGELEAHSFPRSLSALTVSDNLLTGPIPEDCAQLSVFL 936
L L G+T S + + +L+ +D+S N GP+ GL L+ LD+SRN L F T + T +L HL L N ++ S W+ + + ++ P L T LQ LDLSN+S+ + Q FE G+ D+ D I K ILLL+SN EG L A FP +++ L +SDNLL+G +P+ +++ L
Sbjct: 151 LNLVFTGITNIPS--TQFVNFTTLVILDISRNMFSGPIPASLGLFSKLKKLDVSRNSLDGVLFETHF-TNLKNLIHLDLSSNWLALNFSSRWIPPFQLQIFRASFCSNIGSYFPNWLHTQT---------------------HLQWLDLSNSSIRDTIPQWFESILSXXXXXXXXXXXXXGKMPLFHFDSSDQIFYK-------ILLLNSNKFEGTLAA--FPSNVTHLDLSDNLLSGDLPQTVGTMNLSL 368
BLAST of mRNA_E-siliculosus-1a_F_contig1122.815.1 vs. uniprot
Match: A0A6L8AE86_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8AE86_9GAMM) HSP 1 Score: 60.8 bits (146), Expect = 7.350e-6 Identity = 48/123 (39.02%), Postives = 62/123 (50.41%), Query Frame = 1
Query: 94 ETQQVGLEALYNATGGEQWASSSGW-RDATLGVCDWYGVVCDSDGRNVTGLALAGNGLTGNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRNGLSYFPTSWGTEASSLR 459
E+ + LEALY+ATGG W + GW DA L DWYG+ S+GR +T L L N LTG L + +E+ DV L DL N L G + + E+L + N P S G S R
Sbjct: 47 ESYREALEALYHATGGNDWTHNDGWLTDAPL--VDWYGLRM-SEGR-ITHLELDDNNLTGELPKEIEMLDVYML---DLRWNSLSGGLENLKNMKAVGELLLSANNFSGRIPRSLGNITSLRR 162
BLAST of mRNA_E-siliculosus-1a_F_contig1122.815.1 vs. uniprot
Match: A0A446M885_TRITD (LRRNT_2 domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446M885_TRITD) HSP 1 Score: 61.2 bits (147), Expect = 9.050e-6 Identity = 40/85 (47.06%), Postives = 47/85 (55.29%), Query Frame = 1
Query: 160 SGWRDATLGVCDWYGVVCDSDGRNVTGLALAGNGLTGNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRNGL 414
S W DA C W G+ C S R VTG+ L G GL G LS AV L+++++ S NEL GPV G LEVLDLS N L
Sbjct: 53 SSWDDAAT-PCGWAGIAC-SLAREVTGVTLHGLGLGGALSPAVCALPRLAVLNV--SKNELSGPVPAGLAACRALEVLDLSTNSL 133 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1122.815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1122.815.1 >prot_E-siliculosus-1a_F_contig1122.815.1 ID=prot_E-siliculosus-1a_F_contig1122.815.1|Name=mRNA_E-siliculosus-1a_F_contig1122.815.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1009bp MQTLPIWGFAAAALLAAQWIEGAGGVSSWYLETQQVGLEALYNATGGEQWback to top mRNA from alignment at E-siliculosus-1a_F_contig1122:19542..29501+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1122.815.1 ID=mRNA_E-siliculosus-1a_F_contig1122.815.1|Name=mRNA_E-siliculosus-1a_F_contig1122.815.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9960bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1122:19542..29501+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1122:19542..29501+ >mRNA_E-siliculosus-1a_F_contig1122.815.1 ID=mRNA_E-siliculosus-1a_F_contig1122.815.1|Name=mRNA_E-siliculosus-1a_F_contig1122.815.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6054bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1122:19542..29501+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |