mRNA_E-siliculosus-1a_F_contig1120.807.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1120.807.1
Unique NamemRNA_E-siliculosus-1a_F_contig1120.807.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1120.807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1120contigE-siliculosus-1a_F_contig1120:35751..36131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size381
Model size383
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927626.501776-CDS-E-siliculosus-1a_F_contig1120:35750..361311622927626.501776-CDS-E-siliculosus-1a_F_contig1120:35750..36131Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1120 35751..36131 +
1696318616.4144564-CDS-E-siliculosus-1a_F_contig1120:35750..361311696318616.4144564-CDS-E-siliculosus-1a_F_contig1120:35750..36131Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1120 35751..36131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1120.807.1prot_E-siliculosus-1a_F_contig1120.807.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1120 35751..36131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1120.807.1

>prot_E-siliculosus-1a_F_contig1120.807.1 ID=prot_E-siliculosus-1a_F_contig1120.807.1|Name=mRNA_E-siliculosus-1a_F_contig1120.807.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=127bp
RRRLLPACGLLSLLLFFLFFLCSFLLMLLSSKPSTRVFGVSHSYPSSLAI
NELYGTCGEIGQCRADSSSSSRFLTWVRVAERRTRSGTHHLLPGVYLCFQ
IQGNKHTSSLSLLSPHTCKPTRYGSA*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1120:35751..36131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1120.807.1 ID=mRNA_E-siliculosus-1a_F_contig1120.807.1|Name=mRNA_E-siliculosus-1a_F_contig1120.807.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=381bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1120:35751..36131+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGAGGAGGCTATTGCCAGCTTGCGGTTTGTTGTCACTGTTGTTGTTTTT
CCTTTTTTTTCTTTGTTCTTTTTTATTGATGTTGTTGTCTAGCAAACCAA
GCACAAGAGTGTTCGGTGTGTCTCATTCGTACCCCAGCAGCTTAGCGATA
AACGAGTTGTATGGCACATGCGGTGAGATCGGACAATGCCGTGCCGACAG
CAGTAGCAGTTCCCGATTTCTTACGTGGGTCCGTGTAGCCGAACGGAGGA
CACGGAGCGGGACGCATCATTTACTCCCCGGAGTTTATTTGTGTTTTCAG
ATTCAAGGGAACAAACACACATCATCGTTGTCTTTGCTCTCACCCCACAC
ATGTAAGCCGACACGATACGGTTCAGCATAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1120:35751..36131+

>mRNA_E-siliculosus-1a_F_contig1120.807.1 ID=mRNA_E-siliculosus-1a_F_contig1120.807.1|Name=mRNA_E-siliculosus-1a_F_contig1120.807.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1120:35751..36131+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGAGGAGGCTATTGCCAGCTTGCGGTTTGTTGTCACTGTTGTTGTTTTT
CCTTTTTTTTCTTTGTTCTTTTTTATTGATGTTGTTGTCTAGCAAACCAA
GCACAAGAGTGTTCGGTGTGTCTCATTCGTACCCCAGCAGCTTAGCGATA
AACGAGTTGTATGGCACATGCGGTGAGATCGGACAATGCCGTGCCGACAG
CAGTAGCAGTTCCCGATTTCTTACGTGGGTCCGTGTAGCCGAACGGAGGA
CACGGAGCGGGACGCATCATTTACTCCCCGGAGTTTATTTGTGTTTTCAG
ATTCAAGGGAACAAACACACATCATCGTTGTCTTTGCTCTCACCCCACAC
ATGTAAGCCGACACGATACGGTTCAGCATAGCGGAGGAGGCTATTGCCAG
CTTGCGGTTTGTTGTCACTGTTGTTGTTTTTCCTTTTTTTTCTTTGTTCT
TTTTTATTGATGTTGTTGTCTAGCAAACCAAGCACAAGAGTGTTCGGTGT
GTCTCATTCGTACCCCAGCAGCTTAGCGATAAACGAGTTGTATGGCACAT
GCGGTGAGATCGGACAATGCCGTGCCGACAGCAGTAGCAGTTCCCGATTT
CTTACGTGGGTCCGTGTAGCCGAACGGAGGACACGGAGCGGGACGCATCA
TTTACTCCCCGGAGTTTATTTGTGTTTTCAGATTCAAGGGAACAAACACA
CATCATCGTTGTCTTTGCTCTCACCCCACACATGTAAGCCGACACGATAC
GGTTCAGCATAG
back to top