mRNA_E-siliculosus-1a_F_contig112.803.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig112.803.1 vs. uniprot
Match: A0A6H5JE55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE55_9PHAE) HSP 1 Score: 914 bits (2361), Expect = 0.000e+0 Identity = 517/626 (82.59%), Postives = 534/626 (85.30%), Query Frame = 1
Query: 1279 ITHTDCSGLTDYFCCVIGGMDTCRNNDLLLKYVNCGIRWSSCTLTDLCDYTPEVDDDDVSEYYTSELVDDYVYVSAEIDDNDDDDNAEQCNAEVQACVADPDCLSCVESEAVCDSSATATCSGVMDYLCCVFGDSCSENALVVAYIDCALDDYGCSVDNDLCDTGDDNGTLLTSEIDDGEGEDEEPCPAELTACLADEICGACYGGATLDGSCDGPATDCVDLANYYCCVAGDDCSDNPLAIGYINCLIENQLDHEPCVLTDACAYTADDDAAERGGGDVDDEGMVTEGPEAAADDDRDDIDRGVGELFSWSPTSSXXXXXXXSHGGRGGGXXXXXXXXXXXXXXXXDDGGGAMCLTQQAICMADSACAACMAGATRDGSCDATVPDCAGVADYYCCLAGDVLGCSDNVLLLDLINCEIELDSCTLTDLCGDVHGGXXXXXXXXXXXXXXGRDKDDGGKNDNGTDNHEYSTETPWLKPGGPGAGADDDAQNIDRGFGEFFTWSPTSXXXXXXXGSHEEQHRGRXXXXXXXXXXXXXXXXXXGRGDGGNICLEQQVTCLADSDCAACMAGATRDGSCDATVPDCAGVADYYCCELGSTEGCSDNALLLDFINCGVALESCTLTDLCG 3156
+THTDCSGLTDYFCCVIGGM +CRNN LLL YVNCGI WSSCTLTDLCDYTPEV DDDVS+ DDYVYVS EIDDNDDDD+AE CNAEVQACVAD DC +CV+++AVCDSSATATCSGVMDYLCCVFGDSCSEN LVVAYIDC LDDYGCSVDNDLCDTGDDNGTLL SEIDD +GEDEEPCP ELTACLADE CGACYGGATLDGSCDGPAT+CVDLANYYCCVAGDDCSDNPLA+GYI+ I TA AERGG D DDEGMVTE PEAAADDDRDDI+RGVGELFSWSPTSSXXXXXXX HGGRGG XXX DDGGGAMCLTQQAIC+ADSACAACMAGATRDGSCDATVPDCAGVADYYCCLAGDV GCSDN LLLDLINCEIELDSCTLT+LCGDVHGGXXXXXXXXXXXXXX GGKN NGTDNHE+STETPWLKP G GAGADDDAQNID GFGEFFTWSPTS XXXXXXG+ EEQHRGR XXXXXXXXXXXX GGN CLEQQ CLADSDCAACMAGATRDGSCDATVPDCAGVADYYCCELG TEGCSDNALLLDFINC VALESCTLTDLCG
Sbjct: 1 MTHTDCSGLTDYFCCVIGGMGSCRNNHLLLDYVNCGIGWSSCTLTDLCDYTPEVADDDVSDDXXXXXDDDYVYVSTEIDDNDDDDDAEPCNAEVQACVADQDCFTCVQNDAVCDSSATATCSGVMDYLCCVFGDSCSENTLVVAYIDCTLDDYGCSVDNDLCDTGDDNGTLLISEIDDDDGEDEEPCPDELTACLADETCGACYGGATLDGSCDGPATNCVDLANYYCCVAGDDCSDNPLAVGYISERI-----------------TA---IAERGGSDDDDEGMVTEVPEAAADDDRDDIERGVGELFSWSPTSSXXXXXXXXHGGRGG----------EGRXXXGDDGGGAMCLTQQAICVADSACAACMAGATRDGSCDATVPDCAGVADYYCCLAGDVRGCSDNALLLDLINCEIELDSCTLTELCGDVHGGXXXXXXXXXXXXXXXXXXXXGGKNGNGTDNHEHSTETPWLKPRGQGAGADDDAQNIDGGFGEFFTWSPTSSXXXXXXGTDEEQHRGRGRAGXXXXXXXXXXXX------GGNDCLEQQAICLADSDCAACMAGATRDGSCDATVPDCAGVADYYCCELGVTEGCSDNALLLDFINCVVALESCTLTDLCG 590
BLAST of mRNA_E-siliculosus-1a_F_contig112.803.1 vs. uniprot
Match: D8LMC8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMC8_ECTSI) HSP 1 Score: 565 bits (1456), Expect = 6.570e-191 Identity = 308/351 (87.75%), Postives = 316/351 (90.03%), Query Frame = 1
Query: 1 MSTIATTKTLFAVYFVGTAVANVEHTIASRAAATDGTNPLEGFDPFHHLLNPNRTLFGRTLQAADDDEGDDVEQLCFAEYNACEEDAACTACVDSVTMDGTCYPEDINDCAAIADYLCCIVGPDCSDNKXXXXXXXXXVGICTFADFCDHSTTFDIDDNNGGGSDGDDIEVDDFEDDDAELCPTEMSACIEDSACMACFNGAAVDETCDTGNMTDCADMADYLCCIVGGACSDNEYLVEYVNCAAEIESCALTDFCDHTTXXXXXXXXXXXXXXXXXATEMVTSCADEIATCAQDADCLSCMMAPSVNDVSESCENIVTADTPCSGVENVLCCLYGDTETCRDNALFLEFA 1053
MSTIATTKTLFAVYFVGTAVANV+HTIASRAAATDGTN L+GFDPFH LL+PNRTLFGRTLQAADDDE DDVEQLCFAEY+ACEEDAACTACVDSVTMDGTCY EDINDCAAIADYLCCIVGPDCSDN+XXXXXXXXXVGICTFADFCDHS TFD DD DD AELCPTEMS CIEDSACMAC NG AVDETCDTGNMTDCADMADYLCCIVG ACSDNEYLV+YVNCAAEIESC LTDFCDHTT XXXXXXXXXXXXXATEMVTSCADEIATCAQDADCLSCMMAPSVND SESCEN+VTADTPCSGVEN+LCCLYGDTETCRDNA FLEFA
Sbjct: 6 MSTIATTKTLFAVYFVGTAVANVQHTIASRAAATDGTNSLDGFDPFHRLLDPNRTLFGRTLQAADDDEDDDVEQLCFAEYSACEEDAACTACVDSVTMDGTCYSEDINDCAAIADYLCCIVGPDCSDNEXXXXXXXXXVGICTFADFCDHSKTFDSDDXXXXXXXXXXXXXXXXXDD-AELCPTEMSTCIEDSACMACLNGVAVDETCDTGNMTDCADMADYLCCIVGDACSDNEYLVDYVNCAAEIESCTLTDFCDHTTSTDSXXXXXXXXXXXXXATEMVTSCADEIATCAQDADCLSCMMAPSVNDGSESCENMVTADTPCSGVENMLCCLYGDTETCRDNAPFLEFA 355
BLAST of mRNA_E-siliculosus-1a_F_contig112.803.1 vs. uniprot
Match: D8LMC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMC9_ECTSI) HSP 1 Score: 509 bits (1311), Expect = 3.350e-169 Identity = 309/358 (86.31%), Postives = 313/358 (87.43%), Query Frame = 1
Query: 2086 DDAAERGGGDVDDEGMVTEGPEAAADDDRDDIDRGVGELFSWSPTSSXXXXXXXSHGGRGGGXXXXXXXXXXXXXXXXDDGGGAMCLTQQAICMADSACAACMAGATRDGSCDATVPDCAGVADYYCCLAGDVLGCSDNVLLLDLINCEIELDSCTLTDLCGDVHGGXXXXXXXXXXXXXXGRDKDDGGKNDNGTDNHEYSTETPWLKPGGPGAGADDDAQNIDRGFGEFFTWSPTSXXXXXXXGSHEEQHRGRXXXXXXXXXXXXXXXXXXGRGDGGNICLEQQVTCLADSDCAACMAGATRDGSCDATVPDCAGVADYYCCELGSTEGCSDNALLLDFINCGVALESCTLTDLCGD 3159
D +AERGGGDVDDEGMVTEGPEAA DDD DDIDRGVGELFSWSPTSSXXXXXXXSHGGRGGGXXXXXXXXXXXX DGGGAMCLTQQAICMAD CAACMAGATRDGSCDAT+PDCAGVADYYCCLAGDV GCSDNVLLLDLINCEIELDSCTLTDLCGDVHGGXXXXXXXXXXXXXX KN NGTDNHE+STETPWLKPG PGAGADDDAQNIDRGFGEFFTWSPTSXXXXXXX HEEQHRGR GRGDGGN+CLEQQ CLADSDCAACMAGATRDGSCD TVPDCAGVADYYCCELG TEGCSDNALLLDFINCGVALESCTLTDLCGD
Sbjct: 11 DTSAERGGGDVDDEGMVTEGPEAA-DDDGDDIDRGVGELFSWSPTSSXXXXXXXSHGGRGGGXXXXXXXXXXXX-----DGGGAMCLTQQAICMADLDCAACMAGATRDGSCDATLPDCAGVADYYCCLAGDVRGCSDNVLLLDLINCEIELDSCTLTDLCGDVHGGXXXXXXXXXXXXXXXXXXXXXXKNGNGTDNHEHSTETPWLKPGEPGAGADDDAQNIDRGFGEFFTWSPTSXXXXXXXXXHEEQHRGRGRVGGGGRDDDS------GRGDGGNVCLEQQAICLADSDCAACMAGATRDGSCDTTVPDCAGVADYYCCELGGTEGCSDNALLLDFINCGVALESCTLTDLCGD 356 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig112.803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig112.803.1 >prot_E-siliculosus-1a_F_contig112.803.1 ID=prot_E-siliculosus-1a_F_contig112.803.1|Name=mRNA_E-siliculosus-1a_F_contig112.803.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1053bp MSTIATTKTLFAVYFVGTAVANVEHTIASRAAATDGTNPLEGFDPFHHLLback to top mRNA from alignment at E-siliculosus-1a_F_contig112:73796..84542- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig112.803.1 ID=mRNA_E-siliculosus-1a_F_contig112.803.1|Name=mRNA_E-siliculosus-1a_F_contig112.803.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10747bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig112:73796..84542- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig112:73796..84542- >mRNA_E-siliculosus-1a_F_contig112.803.1 ID=mRNA_E-siliculosus-1a_F_contig112.803.1|Name=mRNA_E-siliculosus-1a_F_contig112.803.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig112:73796..84542- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |