mRNA_E-siliculosus-1a_F_contig112.802.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig112.802.1
Unique NamemRNA_E-siliculosus-1a_F_contig112.802.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig112.802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig112contigE-siliculosus-1a_F_contig112:68546..71163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size105
Model size107
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927624.8722441-CDS-E-siliculosus-1a_F_contig112:68545..685851622927624.8722441-CDS-E-siliculosus-1a_F_contig112:68545..68585Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig112 68546..68585 -
1696318615.5530534-CDS-E-siliculosus-1a_F_contig112:68545..685851696318615.5530534-CDS-E-siliculosus-1a_F_contig112:68545..68585Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig112 68546..68585 -
1622927624.8842742-CDS-E-siliculosus-1a_F_contig112:71098..711631622927624.8842742-CDS-E-siliculosus-1a_F_contig112:71098..71163Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig112 71099..71163 -
1696318615.5621986-CDS-E-siliculosus-1a_F_contig112:71098..711631696318615.5621986-CDS-E-siliculosus-1a_F_contig112:71098..71163Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig112 71099..71163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig112.802.1prot_E-siliculosus-1a_F_contig112.802.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig112 68546..71163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig112.802.1

>prot_E-siliculosus-1a_F_contig112.802.1 ID=prot_E-siliculosus-1a_F_contig112.802.1|Name=mRNA_E-siliculosus-1a_F_contig112.802.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=35bp
MTVTTRRVSQASLDNFGDNSCWCQASYGRNTTRGV
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mRNA from alignment at E-siliculosus-1a_F_contig112:68546..71163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig112.802.1 ID=mRNA_E-siliculosus-1a_F_contig112.802.1|Name=mRNA_E-siliculosus-1a_F_contig112.802.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2618bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig112:68546..71163- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACAGTCACGACGAGGAGGGTATCTCAGGCCTCATTGGATAATTTTGG
AGACAACAGTTGCTGGTGAGTTGAAGGAGTTTGGATGGCATGACTCGCAT
ACACGACAACACCAGTACAGCAGTAGTGCAAACGCATGCAGTGCAGTAAA
TGTCCTACAAGCTGCTGTTGTACGCTCTAACTCACCAGCCCCAAGAGGTT
AAGCGTCAGTATATTGCTAAACCCTGGCACAGAACAAATCTCCCTTTCTG
TGCCCTCCTTCGAGATTTCTGGTGGTCTGGCGAGTCTGCCTCTGTGGTAC
TTCGAAGCAAAAAAAAAAGAAAAATACCATTTGTCGTCGAGGATATTCCG
CCGGTGAATCGAGTGGACGAAGACTTCTCGCTTCATCGGCACAGAACAGG
AGGGGACGGCACGGCATTGTACTATTGCCCGTTACGGGGCGGGGACCAGC
CCCTTTGGCCGTCAAAGCGATCCAAAAGGTTCATGACGGAAGGCAGAAGC
GCGGGTACCGACGGTCCAGACAATGTCGGGCCACTATCGACGAGCAGAGA
CGAAATCACCGGACCGCAGTGAGGCGTGAGAGCAAGCGGCGTTGTAGTTG
CTCTTGTGGTGGAGTTGATGTCGTGTCATGCGACGTTTTCCTGATTCCGT
ACCATACAATCTTGGTAAACCCAGTGAGAGTGCGGAAGATTAGCGCTGCC
CCCATGCGGTTATGGAGGTAATCACGAACCTGGGGTGAAGCCTCGGGAGT
TCGGGTTGCACTTCTTTGGCGAATTAGAGGAGCAATGGTTTCAGCACTAG
GCGGAGACATCGCAGAGGAGAAACGCAAGTCGGACGCATAAAAAGCCGTT
CTAAGAATAACGTGGAGGACTTGTGATGGAAGTCGCGGGACTTACGGACG
GTCGCATAATAGCAACGAGTCAGCAGCAGGAACGGGCCAAATGGGGAACA
AATAGTCGAGTCCTATGGTACAAGTAGTCGGACAGAAAATGACCTCGGAT
GTGATAGAATGGCCTTTACCATTCGGAGGCTTGGTCAGTTTCGGGACTCC
TACGTTTGCAGCCGCAATCCCCCGGCTGGTACTAGTGTGGGGAGCGAGAG
CAGTTGGCAAGGCTTAACGTCGCGCCTCGCGGTCAAGGTGGCTGGCGAGA
CAATGCGCGTTCCGTGTGCCTCTCTCCCTAAGGTGTGGCCTAGAAACTGA
AGAAACAGAATGAAGCAATTCGAAAGAAAACAAATACATGGTCAATGTTG
CGTGGGGCTGCGTCGGTGGAGACAACACGATTTGTTGGAGTCGTGTGATT
GTCAACAGCTGGTCTACTGCTAGATCGCAGTGCCACGTCGTTAGACATGC
ACGAGAGATCATGCACACTCGTACACCATACAACGGGATCCACAGCCAAC
TCGCCAAGAAAGCGGTCTTGTTTCGTATGCTGACCAAACCCCGCGTGACA
ATCAGCACCACGAACAGCAGCATCAACGGAGCCGTCACGATCTCGACCTC
CACACCTGCCGCCCTTCTCAGGGGTTTCACCCTACTCTTAATAATAAGGT
GCCAGGGGGGTCTCAGGCCCTGCTGGCTCAGGGATCTCCCTGACCACGCA
CCCAACAATGGACGCCGTACGGCGAACCTGCTGTACTCAATCATAAATCG
CTTCAGCCATTTAGGTGATCTCTACGACAGCAGGTCGGGTGTTGGCAAGG
AGCTGTGGCCCATAACGGGTACCCTTGGTGCGGAGATGGTGACAGCCTTC
GGGTACCCCTAGTAGAAGCTCGCAGCGACTGTGTGGCGCCATCTGATCGG
CCGACGACCGCCTCCACCCGACCCCGACCATCTTTCGACTAGGTGCACCC
GAATCGTGGGTACTCAGCCCGTCGGCGGGGCGTTAATACGTTCCTACCAG
CCAACGGCCGGCCAAGAACGGCGTCAACGGTATGCGCCTGTCACACTCCT
TCCGCTGCCCTGTATGCTCGCACTTGAGACTTGATGCCTGCGGTGTACCC
CGCACAAACATGTCGTTCGAATCCTGCCGATTTTCGTACTGGCGATAAAT
GAGCTGCGACCTCGGCGTACAATACGCGGCTTTTACGAGGTCGGTTTTCA
TCGCTCATGCAGTTTGGCAAAACCACACTTTTCTCCAGAGCTCCAAGTAT
CTTTCCAGACTGTCCATATAGTATACCCGGTCTCGGTGAGGGAGCGAGTC
TGTGTGCTATTCCGAGATGTTGTAACGAAATCAAACAGTTAGACTAGAGA
CTGTACAGAAAAAAACAATGGTGCACTAAGGGACCTTGAGTGAATCCAAC
CGATAGCGAATATATTGTGCCTCTTCCCCCATGGCCCATAGCCTGAGTCA
GCGACATTCGAGCGTACATTGTTGCCGAAAGAGCTGACAGTCGTGATGCA
CTTACTCACACCAGTGTGCAGTGCACCCCGGAAGTCAATATTATACGAGA
GGTGTTCCAAACTATTTATAGAGCGTTCCTGCCGTCCGACACACCAACAA
ACCACCCCCCTTCACACCCAACACCTTTCTCACTACTCACGTATCCCGTC
GCCTCCGTGCATCGATGCATCGAGAAAGGTGTCAAGCAAGTTATGGACGA
AACACTACCAGAGGGGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig112:68546..71163-

>mRNA_E-siliculosus-1a_F_contig112.802.1 ID=mRNA_E-siliculosus-1a_F_contig112.802.1|Name=mRNA_E-siliculosus-1a_F_contig112.802.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=210bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig112:68546..71163- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACAGTCACGACGAGGAGGGTATCTCAGGCCTCATTGGATAATTTTGG
AGACAACAGTTGCTGATGACAGTCACGACGAGGAGGGTATCTCAGGCCTC
ATTGGATAATTTTGGAGACAACAGTTGCTGGTGTCAAGCAAGTTATGGAC
GAAACACTACCAGAGGGGTGGTGTCAAGCAAGTTATGGACGAAACACTAC
CAGAGGGGTG
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