mRNA_E-siliculosus-1a_F_contig1119.795.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1119.795.1
Unique NamemRNA_E-siliculosus-1a_F_contig1119.795.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1119.795.1 vs. uniprot
Match: A0A6H5KT74_9PHAE (PaO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT74_9PHAE)

HSP 1 Score: 483 bits (1242), Expect = 3.300e-170
Identity = 263/295 (89.15%), Postives = 268/295 (90.85%), Query Frame = 1
Query:   49 GGGNKENASPTQFDIIQEGPDAPSSTGFSSIVKSRGFGSSKEMTSTRYRMHAPGVIRVRSEGKKEGEPLFGAALHCIPLGKGRSRLLFKTYAMNFPPMVGFIYGLKPKFLRHLNSCKILEQDMNLICAQEDHVARTGKTLSESFLPIKSSDVLVVELRKWLDHVGHGMPFFEGWKKSKEAADLNDHEDCRRPSHRAFESRYHRHVLICAETRRALATVKRVKKGGLALSALLAAXXXXXXXXXXXXXXXXXXXP--GVGGLVAALGSLCSLGLAAAANALEARFYTNFERHPSLG 927
            G   K  A PT   II+EGPDAPSSTGFS IVKSRGFGS K+MTSTRYRM APGVIRVRSEGKKEGEPLFGAALHCIPLGKGRSRLLFKTYAMNFPPMVGFIYGLKPKFLRHLNSCKILEQDM LICAQEDHVARTGKTLSESFLPIKSSDV+VVELRKWLD VGHGMPFFEGW+KSKEAADLNDHEDCRRPSHRAFESRYHRHVLICAETRRALATVK+VKKGGLALSALLAA       XXXXXXXXXXXX   GVG LVAALGSLC LGLA AANALEARFYTNFERHPSLG
Sbjct:    7 GATKKTPAPPTSMKIIEEGPDAPSSTGFSCIVKSRGFGSRKKMTSTRYRMQAPGVIRVRSEGKKEGEPLFGAALHCIPLGKGRSRLLFKTYAMNFPPMVGFIYGLKPKFLRHLNSCKILEQDMKLICAQEDHVARTGKTLSESFLPIKSSDVMVVELRKWLDRVGHGMPFFEGWQKSKEAADLNDHEDCRRPSHRAFESRYHRHVLICAETRRALATVKQVKKGGLALSALLAAASVLLSRXXXXXXXXXXXXAPRGVGSLVAALGSLCLLGLATAANALEARFYTNFERHPSLG 301          
BLAST of mRNA_E-siliculosus-1a_F_contig1119.795.1 vs. uniprot
Match: A0A7S1ZT10_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZT10_9STRA)

HSP 1 Score: 199 bits (506), Expect = 9.000e-56
Identity = 118/261 (45.21%), Postives = 160/261 (61.30%), Query Frame = 1
Query:    1 SLLDPAHIPVSHDKTEGGGNKENASPTQFDIIQE--GPDAPSSTGFSSIVKSRGFGSSKEMTSTRYRMHAPGVIRVRSEGKKEGEPL-FGAALHCIPLGKGRSRLLFKTYAMNFPPMVGFIYGLKPKFLRHLNSCKILEQDMNLICAQEDHVARTGKTLSESFLPIKSSDVLVVELRKWLDHVGHGMPFFEGWKKSKEAADLNDHEDCRRPS--------HRA---FESRYHRHVLICAETRRALATVKRVKKGGLALSAL 741
            +L+DPAHIP+SHD T GGG +ENA   +  + +   GPD    TG       R  G   +    +Y+  APG+IR +   +    PL FGAALHC+PL  GRSRLLF+ Y    PP+   +  +KPKFL +LNSCKILEQD  LI  QEDH  R+ ++L + ++ + SSDV V   R+WLD VGHGMP+F+G   +  ++++NDH     PS        HRA    E+RYHRHV+ C  TR+ALA ++ +KKG LAL+ +
Sbjct:  270 NLIDPAHIPISHDATPGGGKRENAQAYEMIVDRNSIGPDG--FTGRYRTASQREKGD--DFIEVQYQ--APGIIRQKGMPRGNDSPLRFGAALHCMPLTLGRSRLLFRAYFTGLPPLAKLLITMKPKFLGNLNSCKILEQDAGLITTQEDHFKRSKRSLRDDYILLSSSDVFVKSYRQWLDKVGHGMPWFQGL--ATRSSNVNDHLAEIPPSPPGLDPIHHRAGNYVETRYHRHVMHCPTTRKALARIQTLKKGMLALTVV 522          
BLAST of mRNA_E-siliculosus-1a_F_contig1119.795.1 vs. uniprot
Match: A0A8J6CDC8_DIALT (Rieske domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDC8_DIALT)

HSP 1 Score: 189 bits (479), Expect = 3.270e-52
Identity = 135/326 (41.41%), Postives = 171/326 (52.45%), Query Frame = 1
Query:    1 SLLDPAHIPVSHDKTEGGGNKENASPTQFDIIQEGPDAPSSTGFSSIVKSRGFGSSKEMTS-TRYRMHAPGVIRVRSEGKKEGEPLFGAALHCIPLGKGRSRLLFKTYAMNFPPMVGFIYGLKPKFLRHLNSCKILEQDMNLICAQEDHVART--GKTLSESFLPIKSSDVLVVELRKWLDHVGH----GMPFFEGWKK-SKEAADLNDHEDCRR-------PSHRAF-ESRYHRHVLICAETRRALATVKRVKKGGLAL--SALLAAXXXXXXXXXXXXXXXXXXXPGVGGLVAALGSLCSLGLAAAANALEARFYTNFERHPSL 924
            +LLDPAHIPVSHD+T GGG +ENA P + ++     D     G     ++   G+++        R  APGVI  R+ G   G   FGAALHC+PLG  RSRLLF+TY    P     +  LKP +LRHLNSCKILEQD  LI +QED +A +  G +    +LP++S+DV VV  RKWLD VG     GMP+  GW   + +A         R        P+HRA  E RY RHV  C  TR ALA V+ +K+   AL  +A LAA                   P  G L AA+G+  +LG A     LE  F+  FER   L
Sbjct:  225 NLLDPAHIPVSHDRTPGGGKRENAQPLEMEVYDGSVDRTGFRGRYRNTRASSGGATRAPPGWIDVRFAAPGVIYQRNAG---GPIRFGAALHCMPLGASRSRLLFRTYFKGLPRAARLLLALKPLWLRHLNSCKILEQDAGLIASQEDALAASAHGASTGSQYLPLRSADVFVVAHRKWLDLVGASGAGGMPWAVGWDAPAADALHAASPLAARATLAPSLAPAHRAIAEDRYSRHVRHCRATRDALARVRALKRALFALGGAAALAAAALN---------------PAGGSLRAAVGAALALGCALGLRRLERLFFRPFERREQL 532          
BLAST of mRNA_E-siliculosus-1a_F_contig1119.795.1 vs. uniprot
Match: A0A836C985_9STRA (Rieske domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C985_9STRA)

HSP 1 Score: 189 bits (480), Expect = 4.700e-52
Identity = 110/247 (44.53%), Postives = 148/247 (59.92%), Query Frame = 1
Query:    1 SLLDPAHIPVSHDKTEGGGNKENASPTQFDIIQEGPDAPSSTGFSSIVKSRGFGSSKEMTSTRYRMHAPGVIRVRSE--GKKEGEP--LFGAALHCIPL------------------GKGRSRLLFKTYAMNFPPMVGFIYGLKPKFLRHLNSCKILEQDMNLICAQE----------------------------DHVARTGKTLSESFLPIKSSDVLVVELRKWLDHVGHGMPFFEGWKKSKEAA 591
            +L+DPAHIP+SH  TEGGGN++NA P  FDI +   D+  + GF + + +     SK  T+ ++   AP VIR+R+E  GKKEG+P  +FGAALHC+                    G+GRSR+LF TYA   PP+V  I+G+KP +LRHLNSCK+LEQD+ LIC+QE                            DH ARTG+TLS+++LPI +SD LVV+ R+WLD VG GMP+ EG+  +   A
Sbjct:  235 NLIDPAHIPISHHNTEGGGNRDNAKPLNFDIDK---DSFGAAGFKAKITNL---FSKGTTAIQF--DAPCVIRLRTETPGKKEGQPGLVFGAALHCVAXXXXXXXXXXXXXXXXXXXGQGRSRILFMTYARRMPPLVKLIFGIKPLWLRHLNSCKVLEQDLGLICSQEXXXXXXXXXEFKRXXXXXXXXXXXXXXXDHFARTGETLSQAYLPIATSDALVVQYRRWLDAVGSGMPYHEGFLSNANVA 473          
BLAST of mRNA_E-siliculosus-1a_F_contig1119.795.1 vs. uniprot
Match: A0A7S2XLJ2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLJ2_9STRA)

HSP 1 Score: 185 bits (469), Expect = 3.210e-50
Identity = 110/259 (42.47%), Postives = 148/259 (57.14%), Query Frame = 1
Query:    1 SLLDPAHIPVSHDKTEGGGNKENASPTQFDIIQEGPDAPSSTGFSSIVKSRGFGSSKEMTSTRYRMHAPGVIRVRSEGKKEGEPLFGAALHCIPLGKGRSRLLFKTYAMNFPPMVGFIYGLKPKFLRHLNSCKILEQDMNLICAQEDHVART-GKTLSESFLPIKSSDVLVVELRKWLDHVGHGMPFFEGWKKS--------------KEAADLNDHEDCRRPSHRAFESRYHRHVLICAETRRALATVKRVKKGGLAL 732
            +L+DPAH+P+SHD+T GGG +ENA P +  + ++  + P   GF+   ++ G   ++  T    +  APG+IR   +  K G+  FGAALHC+PL  G+SRLLF+ Y    P     +   KPK+LR+LNSCK+LEQD+ LI  QEDH AR  G+ L + FL + SSD  V   R+WLD VGHGMP+F+G   +              KE A   D    R  +    E+RYHRHV  C  TR AL  V R+K   L L
Sbjct:  285 NLIDPAHVPISHDRTPGGGKRENAQPYEMILDKDSVNNPQ--GFTGRFRNAGP-DAQNATWFELQYEAPGIIR---QSAKNGKFQFGAALHCMPLSLGKSRLLFRAYFTGLPWFARIMIESKPKWLRNLNSCKVLEQDVGLIATQEDHFARNKGRMLKDDFLLLASSDKFVGAYRQWLDRVGHGMPWFQGLASTSSTQGNNPLHHLNGKELAPGLDGAHHRASNEAVMETRYHRHVQKCPSTRNALKHVIRIKTTCLTL 537          
BLAST of mRNA_E-siliculosus-1a_F_contig1119.795.1 vs. uniprot
Match: A0A7S1VJZ6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJZ6_9STRA)

HSP 1 Score: 177 bits (448), Expect = 5.170e-48
Identity = 109/261 (41.76%), Postives = 150/261 (57.47%), Query Frame = 1
Query:    1 SLLDPAHIPVSHDKTEGGGNKENASPTQFDIIQEGPDAPSSTGFSSIVKSRGFGSSKEMTSTRYRMHAPGVIRVRSEGKKEGEPL-FGAALHCIPLGKGRSRLLFKTYAMNFPPMVGFIYGLKPKFLRHLNSCKILEQDMNLICAQEDHVARTGKTLSESFLPIKSSDVLVVELRKWLDHVGHGMPFFEGWKKSKEAADLNDHEDCRRPS-----HRA-----FESRYHRHVLICAETRRALATVKRVKKGGLALSALLAA 750
            +L DPAH+ +SHD T GGG +E A      I Q   D+ SS GF+       F  ++ +  +     APG++R + EGK     + F AALHC+PLG GRSRLLF+ +    P +  F+  LKP + RHLNSCK+LEQD+ LI  QED+ AR+ + L E +L ++SSD  V   R+WLD VGHGMP+++G       A  +   +   P      HRA      E+RYHRHV+ C  TR AL  ++  K+   A +A+LAA
Sbjct:  184 NLADPAHVDISHDSTPGGGKRERAKAYDMKIDQ---DSISSDGFTGK-----FRQNENLPYSDLVFEAPGIVRNKFEGKIGSSTVRFEAALHCMPLGLGRSRLLFRVFNKGLPKLALFLLNLKPLWSRHLNSCKVLEQDVGLITTQEDYFARSKRELKEDYLLLQSSDTYVGAYRQWLDKVGHGMPWYQGLLSHNGGAIRSVPSNTLPPGLEPGYHRASNEDVVETRYHRHVMNCPTTRNALRRIQLGKRISTA-AAILAA 435          
BLAST of mRNA_E-siliculosus-1a_F_contig1119.795.1 vs. uniprot
Match: A0A7S2P399_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2P399_9DINO)

HSP 1 Score: 169 bits (429), Expect = 1.390e-47
Identity = 90/193 (46.63%), Postives = 125/193 (64.77%), Query Frame = 1
Query:    1 SLLDPAHIPVSHDKTEGGGNKENASPTQFDIIQEGPDAPSSTGFSSIVKSRGFGSSKEMTSTRYRMHAPGVIRVRSEGKKEGEPLFGAALHCIPLGKGRSRLLFKTYAMNFPPMVGFIYGLK---PKFLRHLNSCKILEQDMNLICAQEDHVARTGKTLSESFLPIKSSDVLVVELRKWLDHVGHGMPFFEGW 570
            +LLDPAHIPVSHD T GGG + NA P + ++++           ++ VK    G + E   T   + APG++R RS     G+ LFGAALHC+PLG+GRSRLLF+ Y    P  + +++ L+   P ++RHL+SC ILEQD+ LI +QED V RT +   + +LP+K++D L+V  R WLD VGHGMP+F GW
Sbjct:   82 NLLDPAHIPVSHDGTPGGGKRANAQPLEMEVLETTSQGVRGRFRNTRVK----GGAGEEPWTDIALEAPGIVRWRSA---RGKILFGAALHCMPLGRGRSRLLFRIYT-RLPRPLRWLFKLRTSRPAWMRHLSSCVILEQDVGLITSQEDRVLRTRRAPRDDWLPLKTADTLLVAYRSWLDRVGHGMPYFLGW 266          
BLAST of mRNA_E-siliculosus-1a_F_contig1119.795.1 vs. uniprot
Match: A0A7S1TYS4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYS4_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.610e-43
Identity = 102/264 (38.64%), Postives = 148/264 (56.06%), Query Frame = 1
Query:    1 SLLDPAHIPVSHDKTEGGGNKENASPTQFDIIQEGPDAPSSTGFSSIVKSRGFGSSKEMTS-----------TRYRMHAPGVIRVRSEGKKEGEPLFGAALHCIPLGKGRSRLLFKTYAMNFPPMVGFIYGL--------KPKFLRHLNSCKILEQDMNLICAQEDHVA-RTGKTLSESFLPIKSSDVLVVELRKWLDHVGHGMPFFEGWKKSKEAADLNDHEDCRRPSHRAFESRYHRHVLICAETRRALATVKRVKKGGLAL 732
            +L DPAHIPVSHD+T GGG +ENA P + +++   P    S   ++  K++   S K+ T            T  ++ APG++R R E    G   FG+ALHC+P    RSRLLF+TY      + G ++          KP +LRHLNSCKILEQD+ LI +QED +A + G+  ++  L +KSSD +++ +R+WLD VG  +P ++GW    + +          P  R  ESRY RHV +   TR AL  +K +++  LAL
Sbjct:  208 NLSDPAHIPVSHDRTPGGGKRENAQPLEMEVLDITPTGVESRFRNTRPKAKT--SKKQETEDEAKDENTNAWTEIKIDAPGIVRYRFE--LPGGAAFGSALHCVPSSPYRSRLLFRTYFKGGGGVKGLLFKALFKSKTWYKPMWLRHLNSCKILEQDLGLITSQEDIMASKPGQIWADEALTLKSSDAVLIAVRQWLDGVGPALPHYQGWNSRADPSLPAP------PPDRYMESRYTRHVKVQRSTRNALRRIKWLRQASLAL 461          
BLAST of mRNA_E-siliculosus-1a_F_contig1119.795.1 vs. uniprot
Match: A0A813H4Z8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H4Z8_POLGL)

HSP 1 Score: 156 bits (395), Expect = 2.040e-40
Identity = 126/339 (37.17%), Postives = 165/339 (48.67%), Query Frame = 1
Query:    1 SLLDPAHIPVSHDKTEGGGNKENASPTQFDIIQEGPDAPSS--TGFSSIVKSRGFGSS--KEMTSTRYRMHAPGVIRVRSEGKKEGEPLFGAALHCIPLGKGRSRLLFKTYAMNFPPMVGFIYGLKPKFLRHLNSCKILEQDMNLICAQEDHVARTGKTLSES---------------------FLPIKSSDVLVVELRKWLDHVGHGMPFFEGWKKSKEAADLNDHEDCRRPS---------HRAFES-RYHRHVLICAETRRALATVKRVKKGGLALSALLAAXXXXXXXXXXXXXXXXXXXPGVGGLVAALGSLCSLGLAAAANALEARFYTNFER 912
            +L+DPAHIP+SHD T GGG +ENA   +  +     DA S   +GF+   ++   G+   K    T     APG++R RS+    G  +FG ALHC+PL  GRSRLLF+ Y    P +   +Y LKP++LR+LNSCK+LEQD+ LIC QEDH++    + +E                      +L + S D  V   R W D    GMP+  GW  S  AAD+         +         HRA  + R+ RH   C  TR AL  VKR     LAL+A  A    XXXXXXX                AALG++     +     LEA FYT F R
Sbjct:  166 NLIDPAHIPISHDATPGGGKRENAQALEMQV-----DASSVGVSGFTGRYRATRLGAKTGKPDPWTETAFEAPGIVRYRSQ---RGNIVFGGALHCVPLAPGRSRLLFRVYFSGLPWIAMLVYSLKPQWLRNLNSCKVLEQDVGLICTQEDHLSGADGSSAEGGSSKGVGXXXXXXXXGGLAGQYLTLASQDTFVKAYRVWQDRFRVGMPWAVGW--SSPAADVAAASPLAASASLGPGLDGAHRALRANRFERHGQHCRATRNALQGVKR-----LALAAQAAGMVAXXXXXXXKAARP-----------AALGAVFCFAASFGLRKLEAEFYTGFRR 478          
BLAST of mRNA_E-siliculosus-1a_F_contig1119.795.1 vs. uniprot
Match: A0A813LLZ5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LLZ5_POLGL)

HSP 1 Score: 155 bits (393), Expect = 9.190e-39
Identity = 137/339 (40.41%), Postives = 176/339 (51.92%), Query Frame = 1
Query:    1 SLLDPAHIPVSHDKTEGGGNKENASPTQFDIIQEGPDAPSS--TGFSSIVKSRGFGSS--KEMTSTRYRMHAPGVIRVRSEGKKEGEPLFGAALHCIPLGKGRSRLLFKTYAMNFPPMVGFIYGLKPKFLRHLNSCKILEQDMNLICAQEDHVARTGKTLSES---------------------FLPIKSSDVLVVELRKWLDHVGHGMPFFEGWKKSKEAADLNDHEDCRRPS---------HRAFES-RYHRHVLICAETRRALATVKRVKKGGLALSALLAAXXXXXXXXXXXXXXXXXXXPGVGGLVAALGSLCSLGLAAAANALEARFYTNFER 912
            +L+DPAHIP+SHD T GGG +ENA   +  +     DA S   +GF+   ++   G+   K    T     APG++R RS+    G  +FG ALHC+PL  GRSRLLF+ Y    P +  F+Y LKP++LR+LNSCK+LEQD+ LIC QEDH++    + +E                      +L + S D  V   R W D    GMP+  GW  S  AAD+         +         HRA  + R+ RH   C  TR AL  VKR     LAL+A  A XXXXXXXXXXXXXXXXXXX         LG++     +     LEA FYT F R
Sbjct:  779 NLIDPAHIPISHDATPGGGKRENAQALEMQV-----DASSVGVSGFTGRYRATRLGAKTGKPDPWTETAFEAPGIVRYRSQ---RGNIVFGGALHCVPLAPGRSRLLFRVYFSGLPWIAMFVYSLKPQWLRNLNSCKVLEQDVGLICTQEDHLSGADGSSAEGGSSKGVGXXXXXXXXGGLAGQYLTLASQDTFVKAYRVWQDRFRVGMPWAVGW--SSPAADVAAASPLAASASLGPGLDGAHRALRANRFERHGQHCRATRNALQGVKR-----LALAAQAAGXXXXXXXXXXXXXXXXXXXX--------LGAVFCFAASFGLRKLEAEFYTGFRR 1094          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1119.795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT74_9PHAE3.300e-17089.15PaO domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1ZT10_9STRA9.000e-5645.21Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A8J6CDC8_DIALT3.270e-5241.41Rieske domain-containing protein n=1 Tax=Diacronem... [more]
A0A836C985_9STRA4.700e-5244.53Rieske domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S2XLJ2_9STRA3.210e-5042.47Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1VJZ6_9STRA5.170e-4841.76Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2P399_9DINO1.390e-4746.63Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S1TYS4_9STRA1.610e-4338.64Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A813H4Z8_POLGL2.040e-4037.17Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813LLZ5_POLGL9.190e-3940.41Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1119contigE-siliculosus-1a_F_contig1119:33600..37269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size930
Model size930
Exons5
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.P
EggNOG OGs2QT2X@2759,COG4638@1
EggNOG free text desc.chlorophyllide a oxygenase [overall] activity
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0015031,GO:0015833,GO:0031967,GO:0031975,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072596,GO:0072598
Seed eggNOG ortholog227086.JGI_V11_40956
Seed ortholog evalue7.8e-33
Seed ortholog score147.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1119.795.1prot_E-siliculosus-1a_F_contig1119.795.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1119 33600..37269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927624.7781541-CDS-E-siliculosus-1a_F_contig1119:33599..339471622927624.7781541-CDS-E-siliculosus-1a_F_contig1119:33599..33947Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1119 33600..33947 -
1696318615.4753282-CDS-E-siliculosus-1a_F_contig1119:33599..339471696318615.4753282-CDS-E-siliculosus-1a_F_contig1119:33599..33947Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1119 33600..33947 -
1622927624.7922218-CDS-E-siliculosus-1a_F_contig1119:34718..349011622927624.7922218-CDS-E-siliculosus-1a_F_contig1119:34718..34901Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1119 34719..34901 -
1696318615.4998465-CDS-E-siliculosus-1a_F_contig1119:34718..349011696318615.4998465-CDS-E-siliculosus-1a_F_contig1119:34718..34901Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1119 34719..34901 -
1622927624.807104-CDS-E-siliculosus-1a_F_contig1119:35624..357081622927624.807104-CDS-E-siliculosus-1a_F_contig1119:35624..35708Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1119 35625..35708 -
1696318615.5114322-CDS-E-siliculosus-1a_F_contig1119:35624..357081696318615.5114322-CDS-E-siliculosus-1a_F_contig1119:35624..35708Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1119 35625..35708 -
1622927624.8187778-CDS-E-siliculosus-1a_F_contig1119:36106..363311622927624.8187778-CDS-E-siliculosus-1a_F_contig1119:36106..36331Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1119 36107..36331 -
1696318615.5328176-CDS-E-siliculosus-1a_F_contig1119:36106..363311696318615.5328176-CDS-E-siliculosus-1a_F_contig1119:36106..36331Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1119 36107..36331 -
1622927624.832798-CDS-E-siliculosus-1a_F_contig1119:37179..372691622927624.832798-CDS-E-siliculosus-1a_F_contig1119:37179..37269Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1119 37180..37269 -
1696318615.5430496-CDS-E-siliculosus-1a_F_contig1119:37179..372691696318615.5430496-CDS-E-siliculosus-1a_F_contig1119:37179..37269Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1119 37180..37269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1119.795.1

>prot_E-siliculosus-1a_F_contig1119.795.1 ID=prot_E-siliculosus-1a_F_contig1119.795.1|Name=mRNA_E-siliculosus-1a_F_contig1119.795.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=310bp
SLLDPAHIPVSHDKTEGGGNKENASPTQFDIIQEGPDAPSSTGFSSIVKS
RGFGSSKEMTSTRYRMHAPGVIRVRSEGKKEGEPLFGAALHCIPLGKGRS
RLLFKTYAMNFPPMVGFIYGLKPKFLRHLNSCKILEQDMNLICAQEDHVA
RTGKTLSESFLPIKSSDVLVVELRKWLDHVGHGMPFFEGWKKSKEAADLN
DHEDCRRPSHRAFESRYHRHVLICAETRRALATVKRVKKGGLALSALLAA
ASVLLSRAGAARAAAAAAPPGVGGLVAALGSLCSLGLAAAANALEARFYT
NFERHPSLG*
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mRNA from alignment at E-siliculosus-1a_F_contig1119:33600..37269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1119.795.1 ID=mRNA_E-siliculosus-1a_F_contig1119.795.1|Name=mRNA_E-siliculosus-1a_F_contig1119.795.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3670bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1119:33600..37269- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCTTGCTGGACCCGGCCCACATCCCGGTTAGCCACGACAAGACCGAGGG CGGCGGCAACAAAGAAAACGCCAGCCCCACCCAATTCGATGTGAGCATGC ATTGCATGGTTGGAAACAAGAATGTTTCTCCGCTTTCTCGGGTGCAGTAG TGGTGCAAATGACACTGCTGTGTGCTTGCGAGCCAGGAAATCCTGATGCG CGTTGATAAACGCAGTGCGCAGCTGATGCGCACCGTGTTCGCATCCATCC TGTACGTAGGTAGGTAGGTAGGTAGGAGCGGGGCCTCGGCTTACTAGCTA CTTCCAGAGGTTGGAAGCGCGGGGGGCGCGCCAACCGCGCGGTGCACGAC CGTTTCTTTTCCCCGTTCGATTGCTGGAAAAGTTGGACATTTTTGTGTCT GTCCTGGTATTGTCACCGGTCGGTCGTGGGGTCTACGATGTCGATGGAGC CCCCCATTTTCTCTGTTGCTACCGCTCCTTGTCTGTCGCTACCGCTCCTA GGTAGTCGTGTTAGCTACCGCTCCTTGGATAGGTAGTCGTGTTACAGAAC CGCGTCACAAGTTTTTTTTTGAAGCCCGATTACAGCGCTGTACTCCCATT CTTCGAAGGAGCGTTGAGGAGAACGAGGTGCCGGCCTTACCGAAATCCCG AAAATATAGGGAGAGACGTGCTCTCTTCGTTGGCTCGTGAAGTACCACAG GTCGACGGGCCACAGGGCGACGGGCGGCCCGGGGTGGGGGTGGGGGAGGG TAGGAATCTTCTTTCGCAACCGTGCTCGGGTCGGAAGCACGTTCAGTAAT ACACCGCTCTCACCAGAGGTTTGGGGGCGTTTAGATAGGTGTCTACCGTT CATCGCGAAAAAAGCTGGACTTTCGAAAACCTTCTTTGCACCGCCAAAAG AAAAAGCGTTTTCTTGTGTGGTTCCTCCGGTGGGACAGATAATTCAGGAG GGCCCCGACGCGCCGAGCTCCACCGGGTTTTCGTCGATCGTGAAGTCGAG GGGCTTCGGCAGCAGCAAGGAGATGACGTCGACGCGCTACCGCATGCACG CGCCGGGGGTTATCCGCGTACGCTCCGAGGGCAAGAAGGAGGGCGAGCCT CTCTTCGGTGCCGCTCTGCACTGCATCCCGCTAGGGAAGGGTCGATCGCG CCTCCTGTTCAAGGTATGTACTCATCGTTGGCGTGCCCAACGACGGGGGT AGTTCGGTCTGCAGGGTTCTGTTTGAAACCTACTGAAAGGTTTTGGTTCT TCAATAAGCGATATGGTTAATTGAACAGCCAATGCGTGGATCGGGGCAAA CACGGCTGAGAATGCAGCGATTGCTATAGCTTTTGCTTGGCTACTTGTTG GTGCCCAGAATCGATGTTGGTCGCCATCGCGTGTGCCAGGCACATGGCGC CGCCGCCCGTTGTTCCCGTGTTCTTCACCAACATCCATCATGGCTCGCCC TGCGTTGTCTCCAACAGCCAGCGTTTCACCGGCCGTCTTGGCTGCCCCCT CGCCCGCTTGTCCTTGTGCGCCCCTCCCTACATTTCTTGCGTCGCTTCGT TTTCTCGCCAGACGTACGCGATGAACTTCCCTCCGATGGTGGGCTTTATT TACGGCCTCAAGCCCAAGTTTTTGCGGCACCTCAACTCGTGCAAGGTGCG TGCAACCCCCCCCCCCCCCCCCCCCCCCAGCCACGCGGGCGCCCCGCGCC CTGCCCCCCCCCCCCCCCCCCCCCACACCCCCCCGCCCTCTCCCCCCCCC CCCCCCCCNNNNNNNNNCCCCTGAGGGTGGGCTTTTTTTCGGGCCCGCGC CCCTAGTTTTTTTGCCACCCCACCTCGTGCAAGGTGCGTGCCCCCCCCCC CCCCCCCCCTGACCGAGGGATAGGTGACGGACGTGTTCTAGGCCTCTCCA GGCACTCGTTTCAAAGCGCTAACGTGTTTCATCTCCCCCAAGTAGCTAAC ACCGGACAGAGAAAGCTACCGAGATCGATTCTCGAGGAGCAGGTACGATC CCAATAAACACAAGGCACTTGTGGAACTGGCGTGAACCCGCCGCCTTACC GCCCCCCTCCCCCGCGTCTGTCGTGGCGCGACTCCTCCTTCTTGCGGAGC ACATCTCCGAAATCTCCGAAAGCCACCCCAACACGCGACCGTCTTGGTTC ATTTCCAAGTGCGTTCTACCGACGACCCTGTATCTGCGGCGCCCGTATCC GCTAGCATAAAACCCCACGGCTTGTCAATCCATTGCGGTTGCTCATTTCC GTTTTCGTTGTGCCGGCGGCTTGTTGCTCCCCTCCGACACGTGGGGTCCC CAAACCGCTGGTGCGTTCTCTCCCCGCCCCCTGTTGCTCTGCTCTGACGG CGTGATGATGGATGGCAGATCTTGGAGCAAGACATGAACCTGATTTGCGC CCAGGAGGACCACGTGGCCAGGACCGGCAAGACACTATCGGAGTCGTTTC TGCCCATCAAGAGCTCGGACGTGCTGGTGGTGGAGCTGAGGAAGTGGCTC GACCACGTCGGCCACGGTATGCCTTTCTTCGAGGGCTGGAAGAAGAGCAA GGTACGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATTGTTAGCAT CGACCGCGCTAACCGGCTGGCCAATGAAAAGACGCCAGTCTCAGGGCGGT TGAAAGCAAGTGTGTGCGTGTGTGTGTGTGTGTGTTGGTGTGTGTCTGCG CGACCAAGTGGGCGAACATCTCTCCTTTATCATTAGTATCGACCGCGCTA ACCGGCTGACCAACCCATGAAAGATGTCGGTCTCAGTGCGGTTGAAAAAG CAAAATTCTTCGGAAGGCCACGATCTGTGTGTGTGTGTGTGTCGTGCTTT ATCGTTGGCGTTGACCGCGCGAACGGGTTGACTAACCAATGAAAATACGC CAGCCTCAGTGCGGCTGAAAACAGAGAATGCTTTTTTTGCCATGATCTGG GACGTAGTTGGCTGATGTGTGGTTCACGGCTTAGCACCGGCCGTGCTAAC AGGCGGACCAAGCAAAAGATATGAGTGTCCGCGGGTACAAGCATCAAGGT CGCAATTAGGGGGCCAAAGTTGCAAGATGGGCGTGTGCGTGTGTGCGTGC GATTGATTATTTGGTCGGCAACGACTACGCTAACCGCCTGACCAATGGCA AGACTTCAACCGTATGCACAGCTGGCCAATCGGGCGTCTGTGTTCATGCT GGCCCCCTTATCTCAGCGCCTTGCTTGCGTGTGCCTTCCCGCCGTAACCC CTACCCCCCGCCGAACGCACCCTTCTTCGCTTCGCTTGCGCACCGGCGTG CTTGGGTTCTCGCGTCCCTCAGGAAGCGGCCGACCTTAACGACCACGAGG ACTGCCGCCGCCCCAGCCACCGCGCTTTCGAGAGCCGGTACCACCGGCAC GTCCTAATCTGCGCCGAGACGCGCAGAGCCCTGGCCACCGTGAAGCGGGT CAAGAAAGGAGGCCTCGCCCTCTCGGCCCTGCTGGCGGCCGCCTCGGTGC TGCTGTCGAGAGCGGGCGCTGCGCGTGCTGCCGCCGCCGCCGCACCACCC GGAGTGGGCGGCCTCGTCGCCGCGTTAGGGTCGCTGTGTTCGCTGGGGTT AGCCGCGGCCGCGAATGCTCTCGAGGCGCGGTTTTACACCAATTTTGAGA GGCACCCTTCCCTGGGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1119:33600..37269-

>mRNA_E-siliculosus-1a_F_contig1119.795.1 ID=mRNA_E-siliculosus-1a_F_contig1119.795.1|Name=mRNA_E-siliculosus-1a_F_contig1119.795.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1860bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1119:33600..37269- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCTTGCTGGACCCGGCCCACATCCCGGTTAGCCACGACAAGACCGAGGG
CGGCGGCAACAAAGAAAACGCCAGCCCCACCCAATTCGATAGCTTGCTGG
ACCCGGCCCACATCCCGGTTAGCCACGACAAGACCGAGGGCGGCGGCAAC
AAAGAAAACGCCAGCCCCACCCAATTCGATATAATTCAGGAGGGCCCCGA
CGCGCCGAGCTCCACCGGGTTTTCGTCGATCGTGAAGTCGAGGGGCTTCG
GCAGCAGCAAGGAGATGACGTCGACGCGCTACCGCATGCACGCGCCGGGG
GTTATCCGCGTACGCTCCGAGGGCAAGAAGGAGGGCGAGCCTCTCTTCGG
TGCCGCTCTGCACTGCATCCCGCTAGGGAAGGGTCGATCGCGCCTCCTGT
TCAAGATAATTCAGGAGGGCCCCGACGCGCCGAGCTCCACCGGGTTTTCG
TCGATCGTGAAGTCGAGGGGCTTCGGCAGCAGCAAGGAGATGACGTCGAC
GCGCTACCGCATGCACGCGCCGGGGGTTATCCGCGTACGCTCCGAGGGCA
AGAAGGAGGGCGAGCCTCTCTTCGGTGCCGCTCTGCACTGCATCCCGCTA
GGGAAGGGTCGATCGCGCCTCCTGTTCAAGACGTACGCGATGAACTTCCC
TCCGATGGTGGGCTTTATTTACGGCCTCAAGCCCAAGTTTTTGCGGCACC
TCAACTCGTGCAAGACGTACGCGATGAACTTCCCTCCGATGGTGGGCTTT
ATTTACGGCCTCAAGCCCAAGTTTTTGCGGCACCTCAACTCGTGCAAGAT
CTTGGAGCAAGACATGAACCTGATTTGCGCCCAGGAGGACCACGTGGCCA
GGACCGGCAAGACACTATCGGAGTCGTTTCTGCCCATCAAGAGCTCGGAC
GTGCTGGTGGTGGAGCTGAGGAAGTGGCTCGACCACGTCGGCCACGGTAT
GCCTTTCTTCGAGGGCTGGAAGAAGAGCAAGATCTTGGAGCAAGACATGA
ACCTGATTTGCGCCCAGGAGGACCACGTGGCCAGGACCGGCAAGACACTA
TCGGAGTCGTTTCTGCCCATCAAGAGCTCGGACGTGCTGGTGGTGGAGCT
GAGGAAGTGGCTCGACCACGTCGGCCACGGTATGCCTTTCTTCGAGGGCT
GGAAGAAGAGCAAGGAAGCGGCCGACCTTAACGACCACGAGGACTGCCGC
CGCCCCAGCCACCGCGCTTTCGAGAGCCGGTACCACCGGCACGTCCTAAT
CTGCGCCGAGACGCGCAGAGCCCTGGCCACCGTGAAGCGGGTCAAGAAAG
GAGGCCTCGCCCTCTCGGCCCTGCTGGCGGCCGCCTCGGTGCTGCTGTCG
AGAGCGGGCGCTGCGCGTGCTGCCGCCGCCGCCGCACCACCCGGAGTGGG
CGGCCTCGTCGCCGCGTTAGGGTCGCTGTGTTCGCTGGGGTTAGCCGCGG
CCGCGAATGCTCTCGAGGCGCGGTTTTACACCAATTTTGAGAGGCACCCT
TCCCTGGGGTGAGAAGCGGCCGACCTTAACGACCACGAGGACTGCCGCCG
CCCCAGCCACCGCGCTTTCGAGAGCCGGTACCACCGGCACGTCCTAATCT
GCGCCGAGACGCGCAGAGCCCTGGCCACCGTGAAGCGGGTCAAGAAAGGA
GGCCTCGCCCTCTCGGCCCTGCTGGCGGCCGCCTCGGTGCTGCTGTCGAG
AGCGGGCGCTGCGCGTGCTGCCGCCGCCGCCGCACCACCCGGAGTGGGCG
GCCTCGTCGCCGCGTTAGGGTCGCTGTGTTCGCTGGGGTTAGCCGCGGCC
GCGAATGCTCTCGAGGCGCGGTTTTACACCAATTTTGAGAGGCACCCTTC
CCTGGGGTGA
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