mRNA_E-siliculosus-1a_F_contig11188.792.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11188.792.1
Unique NamemRNA_E-siliculosus-1a_F_contig11188.792.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11188.792.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.580e-51
Identity = 94/101 (93.07%), Postives = 94/101 (93.07%), Query Frame = 1 
Query:    4 LALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGRWGWSQGIGASADSATEEAVMDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGR 306
            LALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEG  GWSQ IGAS DSATEEAVMDWFVEEVADYEPN LDARKTTPAVQAGRKLG RHLQ LLKAVGR
Sbjct:  801 LALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGR 901
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BLAST of mRNA_E-siliculosus-1a_F_contig11188.792.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 1.220e-50
Identity = 93/101 (92.08%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:    4 LALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGRWGWSQGIGASADSATEEAVMDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGR 306
            LALQLSDGYVDGTLPT DTAEERGTHTTAGMGGVEG  GWSQ IGAS DSATEEAVMDWFVEEVADYEPNKLDARKTT AVQAGRKLG RHLQ LLKAVGR
Sbjct:  616 LALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGR 716
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BLAST of mRNA_E-siliculosus-1a_F_contig11188.792.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 1.060e-49
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:    4 LALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGRWGWSQGIGASADSATEEAVMDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGR 306
            LALQLSDGYVDGTLPTTDTAEERG+H TAGMGGVEG  GWSQ IGAS DSATEEAVMDWFVEEVADYEPN +DARKTT AVQAGRKLGKRHLQ LLKAVGR
Sbjct:  589 LALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGR 689
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11188.792.1 vs. uniprot
Match: A0A6H5JSF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.720e-37
Identity = 70/82 (85.37%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:    4 LALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGRWGWSQGIGASADSATEEAVMDWFVEEVADYEPNKLDARKTTPAVQ 249
            LALQLSDGYVDG LPTTDTAEERGTHTTAG GG      WSQ IGAS D ATEEAVMDWFVEEVADYEPN LDARKTTPAVQ
Sbjct:  121 LALQLSDGYVDGALPTTDTAEERGTHTTAGGGG------WSQDIGASPDPATEEAVMDWFVEEVADYEPNNLDARKTTPAVQ 196
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11188.792.1 vs. uniprot
Match: A0A6H5KC16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.570e-29
Identity = 59/66 (89.39%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:  109 GRWGWSQGIGASADSATEEAVMDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGR 306
            G  GWSQ IGAS DSATEEAVMDWFVEEVADYEPN LD RKTTPAVQAGRKLGKRHLQI+LKAVGR
Sbjct:   41 GGGGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDTRKTTPAVQAGRKLGKRHLQIILKAVGR 106
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BLAST of mRNA_E-siliculosus-1a_F_contig11188.792.1 vs. uniprot
Match: A0A6H5JH23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH23_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.630e-19
Identity = 49/77 (63.64%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:   22 DGYVDGTLPTTDTAEERGTHTTAGMGGVEGRWG-WSQGIGASADSATEEAVMDWFVEEVADYEPNKLDARKTTPAVQ 249
            D Y +  L +   A  RG   TA        WG WSQ IGAS D+ATEEAVMDWFVEEVADYEPN LDARKTTPAVQ
Sbjct:   18 DEYSNTKLRSCARAGYRGLFATA--------WGGWSQDIGASPDAATEEAVMDWFVEEVADYEPNNLDARKTTPAVQ 86
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BLAST of mRNA_E-siliculosus-1a_F_contig11188.792.1 vs. uniprot
Match: A0A6H5KEA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA4_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.630e-15
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    4 LALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGRWGWSQGIGASADSATEEAVMDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVG 303
            LAL++++G   GT+ TTD +             V GR GW+  +GA  D  +EEAVM+WF EEVA++E N   A + TPA QAGR+LGK+HL+ LL AVG
Sbjct:  223 LALRMTEGLAAGTISTTDNS-------------VGGR-GWNLDLGALPDGTSEEAVMEWFTEEVANHEANTT-ASRGTPAEQAGRRLGKQHLKKLLMAVG 307
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BLAST of mRNA_E-siliculosus-1a_F_contig11188.792.1 vs. uniprot
Match: D8LGB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB9_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 6.400e-14
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:    4 LALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGRWGWSQG---IGASADSATEEAVMDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVG 303
            +AL+L+DG  DG + T+  AEE+ T   AG+G       W+ G    G   D  +EEAVM+WF+EEV +YEP+  D R+T     AG +LGKRHL+ +L AVG
Sbjct:  175 VALRLTDGLPDGPIATSHDAEEKRTPNAAGVG-------WAAGGSKFGVLTDGVSEEAVMEWFIEEVTNYEPS--DRRET-----AGSRLGKRHLRKILTAVG 263
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BLAST of mRNA_E-siliculosus-1a_F_contig11188.792.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.940e-12
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  109 GRWGWSQGIGASADSATEEAVMDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVG 303
            G  GWSQG  A  D A +  VM+WF +EVA+ EP    A +TTP  QAGR+LGK+HLQ LL AVG
Sbjct:  928 GGGGWSQGEYALPDGARDRDVMEWFADEVANLEPQDHHATRTTPEEQAGRRLGKKHLQTLLLAVG 992
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11188.792.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.680e-10
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  118 GWSQGIGASADSATEEAVMDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVG 303
            GW QG  A  D A E+ VM+WF +EV+++EP    A + TP  QAG +LGK+HLQ LL AVG
Sbjct:  958 GWRQGEYALPDGAGEKDVMEWFADEVSNFEPQHRHATRMTPEEQAGSRLGKKHLQTLLLAVG 1019
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11188.792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FUA0_ECTSI1.580e-5193.07Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
D7FUA1_ECTSI1.220e-5092.08Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FUA2_ECTSI1.060e-4990.10Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5JSF6_9PHAE1.720e-3785.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC16_9PHAE2.570e-2989.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH23_9PHAE2.630e-1963.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEA4_9PHAE6.630e-1548.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGB9_ECTSI6.400e-1445.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPS8_ECTSI2.940e-1256.92Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JBQ0_9PHAE1.680e-1053.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11188contigE-siliculosus-1a_F_contig11188:800..1814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size306
Model size307
Exons3
Hectar predicted targeting categoryother localisation
Seed eggNOG ortholog2880.D7FUA0
Seed ortholog evalue1.9e-44
Seed ortholog score184.9
Taxonomic scopeEukaryota
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.7.11.1
EggNOG OGs2QQYD@2759,COG4886@1
EggNOG free text desc.protein serine/threonine kinase activity
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
KEGG ModuleM00686
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG koko:K04730,ko:K04733
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11188.792.1prot_E-siliculosus-1a_F_contig11188.792.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11188 800..1814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927624.0129323-CDS-E-siliculosus-1a_F_contig11188:799..8561622927624.0129323-CDS-E-siliculosus-1a_F_contig11188:799..856Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11188 800..856 -
1696318614.996547-CDS-E-siliculosus-1a_F_contig11188:799..8561696318614.996547-CDS-E-siliculosus-1a_F_contig11188:799..856Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11188 800..856 -
1622927624.028-CDS-E-siliculosus-1a_F_contig11188:1017..11571622927624.028-CDS-E-siliculosus-1a_F_contig11188:1017..1157Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11188 1018..1157 -
1696318615.0059984-CDS-E-siliculosus-1a_F_contig11188:1017..11571696318615.0059984-CDS-E-siliculosus-1a_F_contig11188:1017..1157Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11188 1018..1157 -
1622927624.0470858-CDS-E-siliculosus-1a_F_contig11188:1705..18141622927624.0470858-CDS-E-siliculosus-1a_F_contig11188:1705..1814Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11188 1706..1814 -
1696318615.013425-CDS-E-siliculosus-1a_F_contig11188:1705..18141696318615.013425-CDS-E-siliculosus-1a_F_contig11188:1705..1814Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11188 1706..1814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11188.792.1

>prot_E-siliculosus-1a_F_contig11188.792.1 ID=prot_E-siliculosus-1a_F_contig11188.792.1|Name=mRNA_E-siliculosus-1a_F_contig11188.792.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=102bp
MLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGRWGWSQGIGASAD
SATEEAVMDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAV
GR
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mRNA from alignment at E-siliculosus-1a_F_contig11188:800..1814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11188.792.1 ID=mRNA_E-siliculosus-1a_F_contig11188.792.1|Name=mRNA_E-siliculosus-1a_F_contig11188.792.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1015bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11188:800..1814- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTAGCGTTGCAACTCTCGGATGGGTATGTGGACGGCACCCTCCCCAC
TACTGACACGGCTGAAGAACGTGGCACGCACACCACAGCAGGCATGGGTG
GTGTTGAGGGTGAGGATCCACAGCGCAATTGGCTTGTCCCTTGGCAGCCA
ACGCCGCTTTACCGAGTCGGGTTTGTTGGATGGCTGAGCCCGCCATCCTG
CGACAAAGTGGGCATACGCCTCAATTGCTTGTGGGCAATTGTGTTTATGG
AACCGCGTTGGTATTGGTAGAAACGCATTCACCCTTAGTGTCATGGTGTT
CGGCTTACCTTTGTGCGATGGGTACGTGGTTTACGAAACCATCCGCTCCA
CCTTGCCCTGTTGAAGATAGTAGACGATCCACAGCGCTTTTATTCCACCA
CCTTGATTTTCGGTGCAGCCAGCCCCCGTTAGGTGTCCGGCCTTGAATTG
ATCCAGGTGTTTGGCGTATGTGTGGCAGCGAGTGAGGTTATTCTTGGGGT
CTTGTCGCGACACCCGTCGAACCCACCGTGAGCCCGATTACAAGGGCATT
GCCAAGGCCTCACGCACCTGCAACGAGTTTTTATGTGGGATGAGTATTCC
AAGCCAACGTTGAGATCTTGTGCTCGGACGGGGTACGGTGGGTTGTTTGC
ATTTCAGGCAGGTGGGGATGGAGCCAAGGTATTGGCGCCTCGGCAGACTC
TGCGACCGAGGAAGCCGTTATGGACTGGTTTGTCGAAGAAGTTGCAGACT
ACGAGCCGAACAAACTCGATGCAAGGAAAACAACTCCTGCCGTACAGGTA
TACGAAGGCTTATCTGAGCGCTCTATTGCGGTCGAACTCTTTGCGTCTCC
AGTCCTGCGGCTAAAAATGATCACATCGACAGCAGCCATCGTGGACGCCG
TATTTTTGCCAGCTACGAGATCCCCACCGCTCTTTCTTTTCGCCGCCGTC
CTTTCCAGGCTGGGAGGAAGCTTGGGAAAAGGCACCTGCAGATTCTTCTA
AAGGCGGTTGGGCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11188:800..1814-

>mRNA_E-siliculosus-1a_F_contig11188.792.1 ID=mRNA_E-siliculosus-1a_F_contig11188.792.1|Name=mRNA_E-siliculosus-1a_F_contig11188.792.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11188:800..1814- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTAGCGTTGCAACTCTCGGATGGGTATGTGGACGGCACCCTCCCCAC
TACTGACACGGCTGAAGAACGTGGCACGCACACCACAGCAGGCATGGGTG
GTGTTGAGGATGTTAGCGTTGCAACTCTCGGATGGGTATGTGGACGGCAC
CCTCCCCACTACTGACACGGCTGAAGAACGTGGCACGCACACCACAGCAG
GCATGGGTGGTGTTGAGGGCAGGTGGGGATGGAGCCAAGGTATTGGCGCC
TCGGCAGACTCTGCGACCGAGGAAGCCGTTATGGACTGGTTTGTCGAAGA
AGTTGCAGACTACGAGCCGAACAAACTCGATGCAAGGAAAACAACTCCTG
CCGTACAGGCAGGTGGGGATGGAGCCAAGGTATTGGCGCCTCGGCAGACT
CTGCGACCGAGGAAGCCGTTATGGACTGGTTTGTCGAAGAAGTTGCAGAC
TACGAGCCGAACAAACTCGATGCAAGGAAAACAACTCCTGCCGTACAGGC
TGGGAGGAAGCTTGGGAAAAGGCACCTGCAGATTCTTCTAAAGGCGGTTG
GGCGGGCTGGGAGGAAGCTTGGGAAAAGGCACCTGCAGATTCTTCTAAAG
GCGGTTGGGCGG
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