mRNA_E-siliculosus-1a_F_contig11171.787.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11171.787.1
Unique NamemRNA_E-siliculosus-1a_F_contig11171.787.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: G8Q4N3_PSEO1 (Type 3 secretion system secretin n=32 Tax=Pseudomonadaceae TaxID=135621 RepID=G8Q4N3_PSEO1)

HSP 1 Score: 275 bits (704), Expect = 2.350e-83
Identity = 161/337 (47.77%), Postives = 204/337 (60.53%), Query Frame = 1
Query:   13 WSGSCLLALS-----SLPLSAQGAVLPPWEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRS--QGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGE---DVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEELAA 993
            W+   L+AL+        + AQ A+   W++  Y Y A+STPL  VL DFA TF V L +DG        R++ E     L RL ++  FQWF+Y NTLY+SP   + + RLEVS DA PD++QAL +IGLLD RFGWGELP EG+VLVSGPERYV LV +F++ R T  E +EVISFPLRYA A DR + YR  TL IPGVA+IL  LLE   + S     +SP++  Q   T Q   +G         +E+   + +G      V     SG      +RV AD RNNAVLIYD P R  +Y  LI  +DVPR LVE+DAII+DI+R QL ELA+
Sbjct:   27 WAKPSLIALALAGALGAGMPAQAAIPTDWKNTPYAYDAQSTPLAKVLGDFANTFAVQLVIDGTVKGTVDGRMRAESPQAFLDRLGLENRFQWFMYGNTLYVSPLQNQDSTRLEVSADAVPDMKQALTDIGLLDPRFGWGELPDEGVVLVSGPERYVRLVTQFAEARKTPEEKQEVISFPLRYATAADRNVKYRGETLVIPGVASILKGLLESRSAVSGGMQTASPQASFQNMQTQQSTTMG--------NIEQLALNGMGRPNTSRVPSGANSGAGARGKIRVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKLVEIDAIILDIDRTQLAELAS 355          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A0A7JTM1_9PSED (Type 3 secretion system secretin n=10 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A0A7JTM1_9PSED)

HSP 1 Score: 274 bits (701), Expect = 5.620e-83
Identity = 167/331 (50.45%), Postives = 208/331 (62.84%), Query Frame = 1
Query:   22 SCLLAL---SSLPLS--AQGAVLPPWEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGE--DVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEELAA 993
            S LLAL    SL L+  +Q A    W++  Y Y A+ TPL  VL DFA TFGV L +DG        R++ E     L RL ++  FQWF+Y ++LY+SP   + + RLEVS DA PD++QAL +IGLLD RFGWGELP EG+VL++GPERYV LV +F++ R T  E +EVISFPLRYA A DR I YR  TL IPGVA+IL  LLE   S + +   + P+    A++QG  L G  S     LE+   S +G      VQ    SGG    +RV AD RNNAVLIYD P R  +Y  LI  +DVPR LVE+DAII+DI+R QL ELAA
Sbjct:   24 SALLALLLAGSLGLATPSQAAAPTDWKNTPYAYDAQDTPLTKVLDDFANTFGVQLVIDGTLAGTVQGRMRAESPQAFLDRLGLENRFQWFVYGSSLYVSPLKNQRSRRLEVSADAGPDMKQALTDIGLLDPRFGWGELPDEGVVLITGPERYVRLVTQFAKARKTPEEKQEVISFPLRYASAADRNIKYRGETLVIPGVASILRGLLENRGSATGAAPTALPQ----ASMQG--LQGNQSMAMGSLEQLAFSGMGQPNTRRVQPGQSSGGSRGKIRVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKLVEIDAIILDIDRTQLAELAA 348          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: UPI001905D07C (type III secretion system outer membrane ring subunit SctC n=1 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI001905D07C)

HSP 1 Score: 272 bits (696), Expect = 3.460e-82
Identity = 162/325 (49.85%), Postives = 208/325 (64.00%), Query Frame = 1
Query:   28 LLALSSLPLSAQGAVLPPWEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEG-SPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGED--VRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEELAA 993
            L A   L   AQ AV   W++  Y Y A+ TPL  VL DFA TFGV L +DG        RL+ +   + L RL ++  FQWF+Y ++LY+SP   + + RLEVS DA PD++QAL +IGLLD RFGWGELP EG+VL++GPERYV LV +F++ R T  E +EVISF LRYA A DRTI YR  TL IPGVAT+L  LLE  +P+TS     ++P +   A +Q ++ G  S A+   +E+   S +G      VQ     GG    +RV AD RNNAVLIYD P R  +Y  LI  +DVPR LVE+DAII+DI+R+QL ELA+
Sbjct:   37 LAAALGLAAPAQAAVPNDWKNTPYAYDAQDTPLPKVLDDFANTFGVQLVLDGTVKGTVQGRLRAQSPQEFLDRLGLENRFQWFVYGSSLYVSPLQNQRSKRLEVSADAVPDMKQALTDIGLLDTRFGWGELPDEGVVLITGPERYVRLVTQFAKVRKTPEEKQEVISFALRYASAADRTIKYRGETLVIPGVATLLRGLLENRAPNTS-----AAPPALPQAALQ-NIQGHQSMAMG-NIEQLALSGMGRPNTSRVQPGQSGGGSRGRIRVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKLVEIDAIILDIDRSQLAELAS 354          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A0J8IU34_9PSED (Type 3 secretion system secretin n=5 Tax=Pseudomonas TaxID=286 RepID=A0A0J8IU34_9PSED)

HSP 1 Score: 271 bits (692), Expect = 1.390e-81
Identity = 156/335 (46.57%), Postives = 210/335 (62.69%), Query Frame = 1
Query:   25 CLLALSSL--PLSAQGAVLPP-WEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEG-----------SPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGEDVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEEL 987
            CLLAL  L  PL +  A +P  W++ +Y Y+AE  PLR VL DFAQTFG  L ++G        +++      +L RL  +  FQW+LYNNTLYIS   Q+ +ARLEVS +   DL+QAL +IGLLD RFGWGELP +G+VLVSGP+RY+E +++FS +R +  E + V+++PL++A A+DR IDYR   + IPGVA++L  LLE             PS  +   + SP +QG   +   +LG       Q L    +   G AG+    +   S G  +RV AD RNNAV+IYD P+RHA+YR+LI QLDV R LVE+DAII+DI R Q+ EL
Sbjct:   27 CLLALPLLLAPLHSSLAAIPAEWKNTAYAYEAEHKPLRDVLDDFAQTFGTQLQIEGLLEGNVNGKIRANTPQSLLDRLGTEHRFQWYLYNNTLYISTLDQQESARLEVSSETVADLKQALTDIGLLDSRFGWGELPEDGVVLVSGPKRYIEQIKQFSSQRRSPEEKQSVLTYPLKFANAIDRQIDYRGEKMVIPGVASMLRGLLEPRSPSATAQATQGPSAPSGTPVISPLAQGFPRLGNPLLG-------QMLAPPTSQATGDAGMSLTPRARVSPGR-IRVEADVRNNAVMIYDLPERHAMYRDLITQLDVARKLVEIDAIILDIERTQMREL 353          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A1U9PS41_PSEAZ (Type 3 secretion system secretin n=4 Tax=Pseudomonas TaxID=286 RepID=A0A1U9PS41_PSEAZ)

HSP 1 Score: 270 bits (691), Expect = 1.730e-81
Identity = 156/329 (47.42%), Postives = 207/329 (62.92%), Query Frame = 1
Query:   13 WSGSCLLALSSLPLSAQGAVLPP-WEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGED----VRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEE 984
            W G  +L     P     A +PP W++ +Y Y+AE  PLR VL+DFAQTFG  L ++G        +++      +L RL V+  FQW+LYNNTL+IS   Q+ + RLEVS +   DL+QAL +IGLLD RFGWGELP +G+VLVSGP+ Y+E V++FS +R ++ E + V+S+PL++A A DRT+DYR   LTIPGVA+IL  LLE   STST  GLS P +   A +  ++       L   L  Q+    G  G  +   T+ +        +RV AD RNNAVLIYD P+R A+YR LINQLDV R L+E+DAII+DI R QL E
Sbjct:   25 WRGLLILPWLLAPTGNAFAAIPPEWKNTAYAYEAEHKPLRDVLEDFAQTFGTKLQIEGLLEGNVNGKIRANTPQSMLDRLGVEHRFQWYLYNNTLFISTLDQQQSERLEVSSETISDLKQALTDIGLLDSRFGWGELPEDGVVLVSGPKTYIEQVKQFSSKRRSTDEKQSVLSYPLKFANAADRTLDYRGEKLTIPGVASILRSLLEPR-STSTLAGLSQPPAPQPALLTPNL-----PRLTNPLLGQMLGANGNTGQLDASPTMTARAPTSTSRIRVEADVRNNAVLIYDLPERQAMYRELINQLDVARKLIEIDAIILDIERTQLRE 347          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A2N7ZA61_9PSED (Type 3 secretion system secretin n=2 Tax=Pseudomonas TaxID=286 RepID=A0A2N7ZA61_9PSED)

HSP 1 Score: 268 bits (685), Expect = 1.270e-80
Identity = 157/348 (45.11%), Postives = 208/348 (59.77%), Query Frame = 1
Query:   10 MWSGSCLLALSSLPLSAQGAVLPP-WEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQ---VASQIGMAGVDEVQQTLGSGGED-------------------VRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEE 984
            +W   CLL    +PLS+  A +P  W++ +Y Y+AE  PLR VL+DFAQTFG  L ++G        +++      +L RL ++  FQW+LYNNTLYIS   Q+ +ARLEVS +   DL+QAL +IGLLD RFGWGELP +G+VLVSGP+RY+E +++FS +R ++ E + V+S+PL++A A DR +DYR   L I GVA+IL             RGL  PRS           G A SAL QR   Q   +   +   G   + Q LG+ G                     +RV AD RNNAVLIYD P+R A+YR LINQLDV R L+E+DAII+DI+R QL E
Sbjct:   24 LWCSLCLLCSLLIPLSSTLAAVPAEWKNTAYAYEAEHKPLRDVLEDFAQTFGTQLQIEGLLEGNVNGKIRANTPQSLLDRLGIEHRFQWYLYNNTLYISTLDQQDSARLEVSSETISDLKQALTDIGLLDSRFGWGELPEDGVVLVSGPKRYIEQIKQFSSQRRSADEKQSVLSYPLKFANAADRQVDYRGEKLNILGVASIL-------------RGLLEPRS-----------GSALSALSQRPTHQPAFITPNVPRLGNPLLGQMLGANGNTGQVDAGPALPPRAPVSGGRIRVEADVRNNAVLIYDLPERQAMYRELINQLDVARKLIEIDAIILDIDRTQLRE 347          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A3G7WUS6_9PSED (Type 3 secretion system secretin n=6 Tax=Pseudomonas fluorescens group TaxID=136843 RepID=A0A3G7WUS6_9PSED)

HSP 1 Score: 265 bits (678), Expect = 1.410e-79
Identity = 149/338 (44.08%), Postives = 207/338 (61.24%), Query Frame = 1
Query:    4 KSMWSGSCLLALSSLPLSAQGAVLPP-WEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGG----------EDVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEE 984
            ++ W G  LL+   LP+ +  A +P  W++ +Y Y+AE  PLR VL+DFAQTFG  L ++G        +++      +L RL ++  FQW++YNNTL+IS   Q+ +ARLEVS +   DL+QAL +IGLLD RFGWGELP +G+VL+SGP  Y+EL+++FS +R ++ E + V++F L++A A DR +DYR   L IPGVAT+L  LLE     + S  +++P  Q    + G            RL   + SQ    G+ +    L SG             VRV AD RNNAVLIYD P+R A+YR LI QLDV R L+E+DAII+DI R+QL E
Sbjct:   22 RARWRGLLLLSWLVLPMQSALAAIPSEWKNTAYAYEAEHKPLREVLEDFAQTFGTQLQIEGLLDGTVNGKIRSNTPQSLLDRLGIEHRFQWYMYNNTLFISALDQQESARLEVSSETIADLKQALTDIGLLDSRFGWGELPEDGVVLISGPRHYIELIKKFSSQRKSADEKQSVLTFALKFANAADRQVDYRGEKLNIPGVATMLKGLLEPRTPAAASTRINTPSPQLQQAVTGP-----------RLNNPLLSQA--LGISQSPDALSSGATLTSRAPVNNSRVRVEADVRNNAVLIYDLPERQAMYRELITQLDVARKLLEIDAIILDIERDQLRE 346          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: UPI001CECB2B8 (type III secretion system outer membrane ring subunit SctC n=1 Tax=Pseudomonas farris TaxID=2841207 RepID=UPI001CECB2B8)

HSP 1 Score: 264 bits (674), Expect = 2.070e-79
Identity = 153/320 (47.81%), Postives = 199/320 (62.19%), Query Frame = 1
Query:   28 LLALSSLPLSAQGAVLPPWEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGEDVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEEL 987
            +L+  + P  A  AV   W  + Y Y+A  TPL TVL DFA +FGV LDV G        +++   A + L RLA++  FQWFLYN  LYISP   +S  RLEVS DA PDL+QAL +IGLLD RFGWGELP EG+VLVSGP RYVELVR FS+ ++ + + ++++ FPLRYA   DR ++YRD ++TIPGVA IL +LL    S S ++    P+    A IQ   L   S   R ++      +          +T      + RVAAD RNNAVLI+D P++  +Y  LI QLDVPR+LVE+DAII+DI+R QL  L
Sbjct:    1 MLSALAWPSPATAAVPEQWRQSPYAYEATQTPLATVLADFANSFGVSLDVGGVSGVVDA-KIRSANAQEFLDRLALEHQFQWFLYNGKLYISPQNTQSARRLEVSADAVPDLKQALTDIGLLDKRFGWGELPDEGMVLVSGPARYVELVRNFSKEKVKAEDKQQIMMFPLRYATVADRKVNYRDQSITIPGVANILDDLLSSRSSRSVTQ---DPQ----ANIQ--ALKNMSDFSRNKIMSSANERTSGQAETNGSKTSSKTSSNRRVAADVRNNAVLIFDNPEKRPIYEQLIAQLDVPRNLVEIDAIILDIDRTQLWRL 310          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A8B4I1F8_PSEFL (Type 3 secretion system secretin n=6 Tax=Pseudomonas TaxID=286 RepID=A0A8B4I1F8_PSEFL)

HSP 1 Score: 265 bits (676), Expect = 2.350e-79
Identity = 149/327 (45.57%), Postives = 204/327 (62.39%), Query Frame = 1
Query:    7 SMWSGSCLLALSSLPLSAQGAVLPP-WEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGEDVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEE 984
            S W    LL     PL +  A +PP W++ +Y Y+A+  PLR VL+DFAQTFG+ L V+G        +++      +L RL+V+  FQW+LYNNTLYIS   Q+ +ARLEVS +   DL+QAL +IGLLD RFGWGELP +G+VLVSGP RY+E +++FS +R    E + V+S+PL++A A DR +DYR   LTIPG+AT+L  LLE    ++ S     P +Q    +    +   ++ L +++    A+   +A    +          +RV AD RNNAVLIYD P+R A+YR LI QLDV R LVE+DAII+DI R QL E
Sbjct:   13 SHWRSLLLLPWLLAPLESAVAAIPPEWKNTAYAYEAQHKPLREVLEDFAQTFGIQLQVEGLLEGLVNGKIRANTPQSLLDRLSVEHRFQWYLYNNTLYISTLDQQESARLEVSSETLSDLKQALTDIGLLDARFGWGELPEDGVVLVSGPRRYIEQIKQFSSQRRVPDEKQSVLSYPLKFANATDRVVDYRGEKLTIPGIATMLRGLLEPRTPSALSSASQPPGAQPQNALVTPNVPRLNNPLLEQMLGTSANTGELATGASLTPRTSRATSRIRVEADVRNNAVLIYDLPERQAMYRELITQLDVARKLVEIDAIILDIERTQLNE 339          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A7Y8DQV6_PSETO (Type 3 secretion system secretin n=7 Tax=Pseudomonas fluorescens group TaxID=136843 RepID=A0A7Y8DQV6_PSETO)

HSP 1 Score: 264 bits (674), Expect = 5.540e-79
Identity = 151/333 (45.35%), Postives = 201/333 (60.36%), Query Frame = 1
Query:   13 WSGSCLLALSSLPLSAQGAVLPP-WEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGS--------GGEDVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEE 984
            W     L    LP  A  A +P  W++ +Y Y+A+  PLR VL+DFAQTFG+ L V+G        +++      +L RL V+  FQW+LYNNTLYIS   Q+ +ARLEVS +   DL+QAL +IGLLD RFGWGELP +G+VL+SGP+RY+E +++FS +R T  E + V++FPL++A A DR +DYR   LTIPG+A++L  LLE   ++  S    S  +Q   T+    L         RL   +  QI  A     Q   G+        G   +RV AD RNNA+LIYD P+R  +YR LI QLDV R LVE+DAII+DI R QL E
Sbjct:   25 WRSLLALPWLLLPWGATQAAIPSEWKNTAYAYEAQYKPLREVLEDFAQTFGIQLQVEGLLEGVVNGKIRANTPQSMLDRLGVEHRFQWYLYNNTLYISTLDQQESARLEVSPETLSDLKQALTDIGLLDSRFGWGELPEDGVVLISGPKRYIEQIKQFSSQRRTPDEKQNVLTFPLKFANAADRVVDYRGEKLTIPGIASMLRGLLEPRSASEPSSASRSSAAQSQTTLATPNL--------PRLGNPLLDQITGASAASGQLATGATLTPRAPVGTSRIRVEADVRNNAILIYDLPERQTMYRELITQLDVARKLVEIDAIILDIERTQLNE 349          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G8Q4N3_PSEO12.350e-8347.77Type 3 secretion system secretin n=32 Tax=Pseudomo... [more]
A0A0A7JTM1_9PSED5.620e-8350.45Type 3 secretion system secretin n=10 Tax=Pseudomo... [more]
UPI001905D07C3.460e-8249.85type III secretion system outer membrane ring subu... [more]
A0A0J8IU34_9PSED1.390e-8146.57Type 3 secretion system secretin n=5 Tax=Pseudomon... [more]
A0A1U9PS41_PSEAZ1.730e-8147.42Type 3 secretion system secretin n=4 Tax=Pseudomon... [more]
A0A2N7ZA61_9PSED1.270e-8045.11Type 3 secretion system secretin n=2 Tax=Pseudomon... [more]
A0A3G7WUS6_9PSED1.410e-7944.08Type 3 secretion system secretin n=6 Tax=Pseudomon... [more]
UPI001CECB2B82.070e-7947.81type III secretion system outer membrane ring subu... [more]
A0A8B4I1F8_PSEFL2.350e-7945.57Type 3 secretion system secretin n=6 Tax=Pseudomon... [more]
A0A7Y8DQV6_PSETO5.540e-7945.35Type 3 secretion system secretin n=7 Tax=Pseudomon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11171contigE-siliculosus-1a_F_contig11171:1069..2061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size984
Model size993
Exons1
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko00002,ko02044
Best eggNOG OGNA|NA|NA
Best tax levelGammaproteobacteria
COG Functional cat.NU
EggNOG OGs1MV6H@1224,1RPIX@1236,COG1450@1,COG1450@2
EggNOG free text desc.Type III secretion
KEGG ModuleM00332,M00542
KEGG Pathwayko03070,map03070
KEGG TC3.A.6.1,3.A.6.3
KEGG koko:K03219
Preferred namehrcC
Seed eggNOG ortholog1114970.PSF113_5594
Seed ortholog evalue2.4e-72
Seed ortholog score279.3
Taxonomic scopeBacteria
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927623.2805636-UTR-E-siliculosus-1a_F_contig11171:1068..10771622927623.2805636-UTR-E-siliculosus-1a_F_contig11171:1068..1077Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11171 1069..1077 +
1696318614.57417-UTR-E-siliculosus-1a_F_contig11171:1068..10771696318614.57417-UTR-E-siliculosus-1a_F_contig11171:1068..1077Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11171 1069..1077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927623.2925968-CDS-E-siliculosus-1a_F_contig11171:1077..20611622927623.2925968-CDS-E-siliculosus-1a_F_contig11171:1077..2061Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11171 1078..2061 +
1696318614.589396-CDS-E-siliculosus-1a_F_contig11171:1077..20611696318614.589396-CDS-E-siliculosus-1a_F_contig11171:1077..2061Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11171 1078..2061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11171.787.1prot_E-siliculosus-1a_F_contig11171.787.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11171 1078..2061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11171.787.1

>prot_E-siliculosus-1a_F_contig11171.787.1 ID=prot_E-siliculosus-1a_F_contig11171.787.1|Name=mRNA_E-siliculosus-1a_F_contig11171.787.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=328bp
MWSGSCLLALSSLPLSAQGAVLPPWEDASYVYQAESTPLRTVLQDFAQTF
GVILDVDGEVDGVVSGRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPS
YQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPER
YVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVAT
ILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVA
SQIGMAGVDEVQQTLGSGGEDVRVAADARNNAVLIYDEPDRHALYRNLIN
QLDVPRHLVEVDAIIVDINRNQLEELAA
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mRNA from alignment at E-siliculosus-1a_F_contig11171:1069..2061+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11171.787.1 ID=mRNA_E-siliculosus-1a_F_contig11171.787.1|Name=mRNA_E-siliculosus-1a_F_contig11171.787.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=993bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11171:1069..2061+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCAAATCAATGTGGTCTGGTTCGTGTTTGTTAGCCTTATCATCATTACC ACTTAGTGCCCAAGGAGCTGTGTTGCCTCCTTGGGAAGATGCGTCATATG TCTATCAGGCAGAGAGTACGCCTTTGCGAACCGTCTTGCAGGATTTTGCC CAAACGTTTGGTGTGATTCTTGATGTGGATGGTGAAGTCGATGGTGTTGT GTCAGGGCGCCTCCAAGGCGAAGAGGCCAGTGATGTTTTAACCCGTTTGG CTGTTCAATTTGGGTTTCAGTGGTTTCTTTATAATAACACGCTTTACATA AGCCCTTCTTATCAAGAATCTACAGCCCGCTTAGAGGTGTCGCATGATGC TGCGCCAGACCTCCAGCAAGCACTGCGTAATATTGGGCTTTTGGATGACC GGTTTGGGTGGGGGGAGTTGCCGCATGAGGGCATAGTGCTAGTCTCAGGG CCAGAGCGCTATGTCGAGTTGGTGAGAGAGTTTTCCCAGCGGCGTATTAC GTCTGCAGAGCTTCGTGAGGTTATTAGCTTTCCTCTACGCTACGCTCAGG CTGTTGATAGGACAATTGACTATCGCGACACTACATTAACTATTCCTGGC GTTGCCACAATTTTAAGTGAGCTGTTGGAAGGTAGCCCTTCGACGAGTAC AAGCCGAGGGTTGTCCTCTCCGAGAAGTCAGGGTGCCGCCACGATTCAGG GTGATGTGTTGGGAGGCGCGTCTTCCGCGCTACGGCAGCGCCTCGAAGAG CAGGTGGCATCGCAAATTGGTATGGCGGGTGTTGATGAGGTTCAGCAAAC GCTCGGGTCTGGTGGTGAGGATGTGCGAGTAGCTGCAGATGCTCGGAATA ATGCAGTCTTGATCTATGATGAGCCTGATAGACATGCCCTGTACCGTAAT CTAATCAACCAACTTGATGTGCCCAGGCATCTAGTTGAAGTAGACGCTAT TATCGTGGATATCAATCGCAATCAACTGGAAGAACTGGCTGCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11171:1069..2061+

>mRNA_E-siliculosus-1a_F_contig11171.787.1 ID=mRNA_E-siliculosus-1a_F_contig11171.787.1|Name=mRNA_E-siliculosus-1a_F_contig11171.787.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1968bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11171:1069..2061+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGTCTGGTTCGTGTTTGTTAGCCTTATCATCATTACCACTTAGTGC
CCAAGGAGCTGTGTTGCCTCCTTGGGAAGATGCGTCATATGTCTATCAGG
CAGAGAGTACGCCTTTGCGAACCGTCTTGCAGGATTTTGCCCAAACGTTT
GGTGTGATTCTTGATGTGGATGGTGAAGTCGATGGTGTTGTGTCAGGGCG
CCTCCAAGGCGAAGAGGCCAGTGATGTTTTAACCCGTTTGGCTGTTCAAT
TTGGGTTTCAGTGGTTTCTTTATAATAACACGCTTTACATAAGCCCTTCT
TATCAAGAATCTACAGCCCGCTTAGAGGTGTCGCATGATGCTGCGCCAGA
CCTCCAGCAAGCACTGCGTAATATTGGGCTTTTGGATGACCGGTTTGGGT
GGGGGGAGTTGCCGCATGAGGGCATAGTGCTAGTCTCAGGGCCAGAGCGC
TATGTCGAGTTGGTGAGAGAGTTTTCCCAGCGGCGTATTACGTCTGCAGA
GCTTCGTGAGGTTATTAGCTTTCCTCTACGCTACGCTCAGGCTGTTGATA
GGACAATTGACTATCGCGACACTACATTAACTATTCCTGGCGTTGCCACA
ATTTTAAGTGAGCTGTTGGAAGGTAGCCCTTCGACGAGTACAAGCCGAGG
GTTGTCCTCTCCGAGAAGTCAGGGTGCCGCCACGATTCAGGGTGATGTGT
TGGGAGGCGCGTCTTCCGCGCTACGGCAGCGCCTCGAAGAGCAGGTGGCA
TCGCAAATTGGTATGGCGGGTGTTGATGAGGTTCAGCAAACGCTCGGGTC
TGGTGGTGAGGATGTGCGAGTAGCTGCAGATGCTCGGAATAATGCAGTCT
TGATCTATGATGAGCCTGATAGACATGCCCTGTACCGTAATCTAATCAAC
CAACTTGATGTGCCCAGGCATCTAGTTGAAGTAGACGCTATTATCGTGGA
TATCAATCGCAATCAACTGGAAGAACTGGCTGCAATGTGGTCTGGTTCGT
GTTTGTTAGCCTTATCATCATTACCACTTAGTGCCCAAGGAGCTGTGTTG
CCTCCTTGGGAAGATGCGTCATATGTCTATCAGGCAGAGAGTACGCCTTT
GCGAACCGTCTTGCAGGATTTTGCCCAAACGTTTGGTGTGATTCTTGATG
TGGATGGTGAAGTCGATGGTGTTGTGTCAGGGCGCCTCCAAGGCGAAGAG
GCCAGTGATGTTTTAACCCGTTTGGCTGTTCAATTTGGGTTTCAGTGGTT
TCTTTATAATAACACGCTTTACATAAGCCCTTCTTATCAAGAATCTACAG
CCCGCTTAGAGGTGTCGCATGATGCTGCGCCAGACCTCCAGCAAGCACTG
CGTAATATTGGGCTTTTGGATGACCGGTTTGGGTGGGGGGAGTTGCCGCA
TGAGGGCATAGTGCTAGTCTCAGGGCCAGAGCGCTATGTCGAGTTGGTGA
GAGAGTTTTCCCAGCGGCGTATTACGTCTGCAGAGCTTCGTGAGGTTATT
AGCTTTCCTCTACGCTACGCTCAGGCTGTTGATAGGACAATTGACTATCG
CGACACTACATTAACTATTCCTGGCGTTGCCACAATTTTAAGTGAGCTGT
TGGAAGGTAGCCCTTCGACGAGTACAAGCCGAGGGTTGTCCTCTCCGAGA
AGTCAGGGTGCCGCCACGATTCAGGGTGATGTGTTGGGAGGCGCGTCTTC
CGCGCTACGGCAGCGCCTCGAAGAGCAGGTGGCATCGCAAATTGGTATGG
CGGGTGTTGATGAGGTTCAGCAAACGCTCGGGTCTGGTGGTGAGGATGTG
CGAGTAGCTGCAGATGCTCGGAATAATGCAGTCTTGATCTATGATGAGCC
TGATAGACATGCCCTGTACCGTAATCTAATCAACCAACTTGATGTGCCCA
GGCATCTAGTTGAAGTAGACGCTATTATCGTGGATATCAATCGCAATCAA
CTGGAAGAACTGGCTGCA
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