mRNA_E-siliculosus-1a_F_contig11171.787.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: G8Q4N3_PSEO1 (Type 3 secretion system secretin n=32 Tax=Pseudomonadaceae TaxID=135621 RepID=G8Q4N3_PSEO1) HSP 1 Score: 275 bits (704), Expect = 2.350e-83 Identity = 161/337 (47.77%), Postives = 204/337 (60.53%), Query Frame = 1
Query: 13 WSGSCLLALS-----SLPLSAQGAVLPPWEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRS--QGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGE---DVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEELAA 993
W+ L+AL+ + AQ A+ W++ Y Y A+STPL VL DFA TF V L +DG R++ E L RL ++ FQWF+Y NTLY+SP + + RLEVS DA PD++QAL +IGLLD RFGWGELP EG+VLVSGPERYV LV +F++ R T E +EVISFPLRYA A DR + YR TL IPGVA+IL LLE + S +SP++ Q T Q +G +E+ + +G V SG +RV AD RNNAVLIYD P R +Y LI +DVPR LVE+DAII+DI+R QL ELA+
Sbjct: 27 WAKPSLIALALAGALGAGMPAQAAIPTDWKNTPYAYDAQSTPLAKVLGDFANTFAVQLVIDGTVKGTVDGRMRAESPQAFLDRLGLENRFQWFMYGNTLYVSPLQNQDSTRLEVSADAVPDMKQALTDIGLLDPRFGWGELPDEGVVLVSGPERYVRLVTQFAEARKTPEEKQEVISFPLRYATAADRNVKYRGETLVIPGVASILKGLLESRSAVSGGMQTASPQASFQNMQTQQSTTMG--------NIEQLALNGMGRPNTSRVPSGANSGAGARGKIRVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKLVEIDAIILDIDRTQLAELAS 355
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A0A7JTM1_9PSED (Type 3 secretion system secretin n=10 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A0A7JTM1_9PSED) HSP 1 Score: 274 bits (701), Expect = 5.620e-83 Identity = 167/331 (50.45%), Postives = 208/331 (62.84%), Query Frame = 1
Query: 22 SCLLAL---SSLPLS--AQGAVLPPWEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGE--DVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEELAA 993
S LLAL SL L+ +Q A W++ Y Y A+ TPL VL DFA TFGV L +DG R++ E L RL ++ FQWF+Y ++LY+SP + + RLEVS DA PD++QAL +IGLLD RFGWGELP EG+VL++GPERYV LV +F++ R T E +EVISFPLRYA A DR I YR TL IPGVA+IL LLE S + + + P+ A++QG L G S LE+ S +G VQ SGG +RV AD RNNAVLIYD P R +Y LI +DVPR LVE+DAII+DI+R QL ELAA
Sbjct: 24 SALLALLLAGSLGLATPSQAAAPTDWKNTPYAYDAQDTPLTKVLDDFANTFGVQLVIDGTLAGTVQGRMRAESPQAFLDRLGLENRFQWFVYGSSLYVSPLKNQRSRRLEVSADAGPDMKQALTDIGLLDPRFGWGELPDEGVVLITGPERYVRLVTQFAKARKTPEEKQEVISFPLRYASAADRNIKYRGETLVIPGVASILRGLLENRGSATGAAPTALPQ----ASMQG--LQGNQSMAMGSLEQLAFSGMGQPNTRRVQPGQSSGGSRGKIRVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKLVEIDAIILDIDRTQLAELAA 348
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: UPI001905D07C (type III secretion system outer membrane ring subunit SctC n=1 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI001905D07C) HSP 1 Score: 272 bits (696), Expect = 3.460e-82 Identity = 162/325 (49.85%), Postives = 208/325 (64.00%), Query Frame = 1
Query: 28 LLALSSLPLSAQGAVLPPWEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEG-SPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGED--VRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEELAA 993
L A L AQ AV W++ Y Y A+ TPL VL DFA TFGV L +DG RL+ + + L RL ++ FQWF+Y ++LY+SP + + RLEVS DA PD++QAL +IGLLD RFGWGELP EG+VL++GPERYV LV +F++ R T E +EVISF LRYA A DRTI YR TL IPGVAT+L LLE +P+TS ++P + A +Q ++ G S A+ +E+ S +G VQ GG +RV AD RNNAVLIYD P R +Y LI +DVPR LVE+DAII+DI+R+QL ELA+
Sbjct: 37 LAAALGLAAPAQAAVPNDWKNTPYAYDAQDTPLPKVLDDFANTFGVQLVLDGTVKGTVQGRLRAQSPQEFLDRLGLENRFQWFVYGSSLYVSPLQNQRSKRLEVSADAVPDMKQALTDIGLLDTRFGWGELPDEGVVLITGPERYVRLVTQFAKVRKTPEEKQEVISFALRYASAADRTIKYRGETLVIPGVATLLRGLLENRAPNTS-----AAPPALPQAALQ-NIQGHQSMAMG-NIEQLALSGMGRPNTSRVQPGQSGGGSRGRIRVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKLVEIDAIILDIDRSQLAELAS 354
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A0J8IU34_9PSED (Type 3 secretion system secretin n=5 Tax=Pseudomonas TaxID=286 RepID=A0A0J8IU34_9PSED) HSP 1 Score: 271 bits (692), Expect = 1.390e-81 Identity = 156/335 (46.57%), Postives = 210/335 (62.69%), Query Frame = 1
Query: 25 CLLALSSL--PLSAQGAVLPP-WEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEG-----------SPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGEDVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEEL 987
CLLAL L PL + A +P W++ +Y Y+AE PLR VL DFAQTFG L ++G +++ +L RL + FQW+LYNNTLYIS Q+ +ARLEVS + DL+QAL +IGLLD RFGWGELP +G+VLVSGP+RY+E +++FS +R + E + V+++PL++A A+DR IDYR + IPGVA++L LLE PS + + SP +QG + +LG Q L + G AG+ + S G +RV AD RNNAV+IYD P+RHA+YR+LI QLDV R LVE+DAII+DI R Q+ EL
Sbjct: 27 CLLALPLLLAPLHSSLAAIPAEWKNTAYAYEAEHKPLRDVLDDFAQTFGTQLQIEGLLEGNVNGKIRANTPQSLLDRLGTEHRFQWYLYNNTLYISTLDQQESARLEVSSETVADLKQALTDIGLLDSRFGWGELPEDGVVLVSGPKRYIEQIKQFSSQRRSPEEKQSVLTYPLKFANAIDRQIDYRGEKMVIPGVASMLRGLLEPRSPSATAQATQGPSAPSGTPVISPLAQGFPRLGNPLLG-------QMLAPPTSQATGDAGMSLTPRARVSPGR-IRVEADVRNNAVMIYDLPERHAMYRDLITQLDVARKLVEIDAIILDIERTQMREL 353
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A1U9PS41_PSEAZ (Type 3 secretion system secretin n=4 Tax=Pseudomonas TaxID=286 RepID=A0A1U9PS41_PSEAZ) HSP 1 Score: 270 bits (691), Expect = 1.730e-81 Identity = 156/329 (47.42%), Postives = 207/329 (62.92%), Query Frame = 1
Query: 13 WSGSCLLALSSLPLSAQGAVLPP-WEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGED----VRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEE 984
W G +L P A +PP W++ +Y Y+AE PLR VL+DFAQTFG L ++G +++ +L RL V+ FQW+LYNNTL+IS Q+ + RLEVS + DL+QAL +IGLLD RFGWGELP +G+VLVSGP+ Y+E V++FS +R ++ E + V+S+PL++A A DRT+DYR LTIPGVA+IL LLE STST GLS P + A + ++ L L Q+ G G + T+ + +RV AD RNNAVLIYD P+R A+YR LINQLDV R L+E+DAII+DI R QL E
Sbjct: 25 WRGLLILPWLLAPTGNAFAAIPPEWKNTAYAYEAEHKPLRDVLEDFAQTFGTKLQIEGLLEGNVNGKIRANTPQSMLDRLGVEHRFQWYLYNNTLFISTLDQQQSERLEVSSETISDLKQALTDIGLLDSRFGWGELPEDGVVLVSGPKTYIEQVKQFSSKRRSTDEKQSVLSYPLKFANAADRTLDYRGEKLTIPGVASILRSLLEPR-STSTLAGLSQPPAPQPALLTPNL-----PRLTNPLLGQMLGANGNTGQLDASPTMTARAPTSTSRIRVEADVRNNAVLIYDLPERQAMYRELINQLDVARKLIEIDAIILDIERTQLRE 347
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A2N7ZA61_9PSED (Type 3 secretion system secretin n=2 Tax=Pseudomonas TaxID=286 RepID=A0A2N7ZA61_9PSED) HSP 1 Score: 268 bits (685), Expect = 1.270e-80 Identity = 157/348 (45.11%), Postives = 208/348 (59.77%), Query Frame = 1
Query: 10 MWSGSCLLALSSLPLSAQGAVLPP-WEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQ---VASQIGMAGVDEVQQTLGSGGED-------------------VRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEE 984
+W CLL +PLS+ A +P W++ +Y Y+AE PLR VL+DFAQTFG L ++G +++ +L RL ++ FQW+LYNNTLYIS Q+ +ARLEVS + DL+QAL +IGLLD RFGWGELP +G+VLVSGP+RY+E +++FS +R ++ E + V+S+PL++A A DR +DYR L I GVA+IL RGL PRS G A SAL QR Q + + G + Q LG+ G +RV AD RNNAVLIYD P+R A+YR LINQLDV R L+E+DAII+DI+R QL E
Sbjct: 24 LWCSLCLLCSLLIPLSSTLAAVPAEWKNTAYAYEAEHKPLRDVLEDFAQTFGTQLQIEGLLEGNVNGKIRANTPQSLLDRLGIEHRFQWYLYNNTLYISTLDQQDSARLEVSSETISDLKQALTDIGLLDSRFGWGELPEDGVVLVSGPKRYIEQIKQFSSQRRSADEKQSVLSYPLKFANAADRQVDYRGEKLNILGVASIL-------------RGLLEPRS-----------GSALSALSQRPTHQPAFITPNVPRLGNPLLGQMLGANGNTGQVDAGPALPPRAPVSGGRIRVEADVRNNAVLIYDLPERQAMYRELINQLDVARKLIEIDAIILDIDRTQLRE 347
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A3G7WUS6_9PSED (Type 3 secretion system secretin n=6 Tax=Pseudomonas fluorescens group TaxID=136843 RepID=A0A3G7WUS6_9PSED) HSP 1 Score: 265 bits (678), Expect = 1.410e-79 Identity = 149/338 (44.08%), Postives = 207/338 (61.24%), Query Frame = 1
Query: 4 KSMWSGSCLLALSSLPLSAQGAVLPP-WEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGG----------EDVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEE 984
++ W G LL+ LP+ + A +P W++ +Y Y+AE PLR VL+DFAQTFG L ++G +++ +L RL ++ FQW++YNNTL+IS Q+ +ARLEVS + DL+QAL +IGLLD RFGWGELP +G+VL+SGP Y+EL+++FS +R ++ E + V++F L++A A DR +DYR L IPGVAT+L LLE + S +++P Q + G RL + SQ G+ + L SG VRV AD RNNAVLIYD P+R A+YR LI QLDV R L+E+DAII+DI R+QL E
Sbjct: 22 RARWRGLLLLSWLVLPMQSALAAIPSEWKNTAYAYEAEHKPLREVLEDFAQTFGTQLQIEGLLDGTVNGKIRSNTPQSLLDRLGIEHRFQWYMYNNTLFISALDQQESARLEVSSETIADLKQALTDIGLLDSRFGWGELPEDGVVLISGPRHYIELIKKFSSQRKSADEKQSVLTFALKFANAADRQVDYRGEKLNIPGVATMLKGLLEPRTPAAASTRINTPSPQLQQAVTGP-----------RLNNPLLSQA--LGISQSPDALSSGATLTSRAPVNNSRVRVEADVRNNAVLIYDLPERQAMYRELITQLDVARKLLEIDAIILDIERDQLRE 346
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: UPI001CECB2B8 (type III secretion system outer membrane ring subunit SctC n=1 Tax=Pseudomonas farris TaxID=2841207 RepID=UPI001CECB2B8) HSP 1 Score: 264 bits (674), Expect = 2.070e-79 Identity = 153/320 (47.81%), Postives = 199/320 (62.19%), Query Frame = 1
Query: 28 LLALSSLPLSAQGAVLPPWEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGEDVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEEL 987
+L+ + P A AV W + Y Y+A TPL TVL DFA +FGV LDV G +++ A + L RLA++ FQWFLYN LYISP +S RLEVS DA PDL+QAL +IGLLD RFGWGELP EG+VLVSGP RYVELVR FS+ ++ + + ++++ FPLRYA DR ++YRD ++TIPGVA IL +LL S S ++ P+ A IQ L S R ++ + +T + RVAAD RNNAVLI+D P++ +Y LI QLDVPR+LVE+DAII+DI+R QL L
Sbjct: 1 MLSALAWPSPATAAVPEQWRQSPYAYEATQTPLATVLADFANSFGVSLDVGGVSGVVDA-KIRSANAQEFLDRLALEHQFQWFLYNGKLYISPQNTQSARRLEVSADAVPDLKQALTDIGLLDKRFGWGELPDEGMVLVSGPARYVELVRNFSKEKVKAEDKQQIMMFPLRYATVADRKVNYRDQSITIPGVANILDDLLSSRSSRSVTQ---DPQ----ANIQ--ALKNMSDFSRNKIMSSANERTSGQAETNGSKTSSKTSSNRRVAADVRNNAVLIFDNPEKRPIYEQLIAQLDVPRNLVEIDAIILDIDRTQLWRL 310
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A8B4I1F8_PSEFL (Type 3 secretion system secretin n=6 Tax=Pseudomonas TaxID=286 RepID=A0A8B4I1F8_PSEFL) HSP 1 Score: 265 bits (676), Expect = 2.350e-79 Identity = 149/327 (45.57%), Postives = 204/327 (62.39%), Query Frame = 1
Query: 7 SMWSGSCLLALSSLPLSAQGAVLPP-WEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGSGGEDVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEE 984
S W LL PL + A +PP W++ +Y Y+A+ PLR VL+DFAQTFG+ L V+G +++ +L RL+V+ FQW+LYNNTLYIS Q+ +ARLEVS + DL+QAL +IGLLD RFGWGELP +G+VLVSGP RY+E +++FS +R E + V+S+PL++A A DR +DYR LTIPG+AT+L LLE ++ S P +Q + + ++ L +++ A+ +A + +RV AD RNNAVLIYD P+R A+YR LI QLDV R LVE+DAII+DI R QL E
Sbjct: 13 SHWRSLLLLPWLLAPLESAVAAIPPEWKNTAYAYEAQHKPLREVLEDFAQTFGIQLQVEGLLEGLVNGKIRANTPQSLLDRLSVEHRFQWYLYNNTLYISTLDQQESARLEVSSETLSDLKQALTDIGLLDARFGWGELPEDGVVLVSGPRRYIEQIKQFSSQRRVPDEKQSVLSYPLKFANATDRVVDYRGEKLTIPGIATMLRGLLEPRTPSALSSASQPPGAQPQNALVTPNVPRLNNPLLEQMLGTSANTGELATGASLTPRTSRATSRIRVEADVRNNAVLIYDLPERQAMYRELITQLDVARKLVEIDAIILDIERTQLNE 339
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Match: A0A7Y8DQV6_PSETO (Type 3 secretion system secretin n=7 Tax=Pseudomonas fluorescens group TaxID=136843 RepID=A0A7Y8DQV6_PSETO) HSP 1 Score: 264 bits (674), Expect = 5.540e-79 Identity = 151/333 (45.35%), Postives = 201/333 (60.36%), Query Frame = 1
Query: 13 WSGSCLLALSSLPLSAQGAVLPP-WEDASYVYQAESTPLRTVLQDFAQTFGVILDVDGXXXXXXXXRLQGEEASDVLTRLAVQFGFQWFLYNNTLYISPSYQESTARLEVSHDAAPDLQQALRNIGLLDDRFGWGELPHEGIVLVSGPERYVELVREFSQRRITSAELREVISFPLRYAQAVDRTIDYRDTTLTIPGVATILSELLEGSPSTSTSRGLSSPRSQGAATIQGDVLGGASSALRQRLEEQVASQIGMAGVDEVQQTLGS--------GGEDVRVAADARNNAVLIYDEPDRHALYRNLINQLDVPRHLVEVDAIIVDINRNQLEE 984
W L LP A A +P W++ +Y Y+A+ PLR VL+DFAQTFG+ L V+G +++ +L RL V+ FQW+LYNNTLYIS Q+ +ARLEVS + DL+QAL +IGLLD RFGWGELP +G+VL+SGP+RY+E +++FS +R T E + V++FPL++A A DR +DYR LTIPG+A++L LLE ++ S S +Q T+ L RL + QI A Q G+ G +RV AD RNNA+LIYD P+R +YR LI QLDV R LVE+DAII+DI R QL E
Sbjct: 25 WRSLLALPWLLLPWGATQAAIPSEWKNTAYAYEAQYKPLREVLEDFAQTFGIQLQVEGLLEGVVNGKIRANTPQSMLDRLGVEHRFQWYLYNNTLYISTLDQQESARLEVSPETLSDLKQALTDIGLLDSRFGWGELPEDGVVLISGPKRYIEQIKQFSSQRRTPDEKQNVLTFPLKFANAADRVVDYRGEKLTIPGIASMLRGLLEPRSASEPSSASRSSAAQSQTTLATPNL--------PRLGNPLLDQITGASAASGQLATGATLTPRAPVGTSRIRVEADVRNNAILIYDLPERQTMYRELITQLDVARKLVEIDAIILDIERTQLNE 349 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11171.787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11171.787.1 >prot_E-siliculosus-1a_F_contig11171.787.1 ID=prot_E-siliculosus-1a_F_contig11171.787.1|Name=mRNA_E-siliculosus-1a_F_contig11171.787.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=328bp MWSGSCLLALSSLPLSAQGAVLPPWEDASYVYQAESTPLRTVLQDFAQTFback to top mRNA from alignment at E-siliculosus-1a_F_contig11171:1069..2061+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11171.787.1 ID=mRNA_E-siliculosus-1a_F_contig11171.787.1|Name=mRNA_E-siliculosus-1a_F_contig11171.787.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=993bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11171:1069..2061+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11171:1069..2061+ >mRNA_E-siliculosus-1a_F_contig11171.787.1 ID=mRNA_E-siliculosus-1a_F_contig11171.787.1|Name=mRNA_E-siliculosus-1a_F_contig11171.787.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1968bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11171:1069..2061+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |