mRNA_E-siliculosus-1a_F_contig11171.786.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11171.786.1
Unique NamemRNA_E-siliculosus-1a_F_contig11171.786.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: A0A7X4LLX4_9VIBR (Serine kinase n=2 Tax=Vibrio TaxID=662 RepID=A0A7X4LLX4_9VIBR)

HSP 1 Score: 56.6 bits (135), Expect = 5.200e-9
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 MISDTSMQHRLSYRFERAQDGINKAALG-GNGSFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
            M S  S +HRL  +FER Q  ++K     GN S  D+ AFN+A++Q   AS+A  Q+L+VKH++ K+II+ +
Sbjct:    1 MSSIESTRHRLDMQFERTQKNMDKLVTNLGNASLGDIYAFNAAMRQNATASWAVNQELQVKHNLAKAIINEI 72          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: UPI000F55DC84 (serine kinase n=1 Tax=Pseudomonas chlororaphis TaxID=587753 RepID=UPI000F55DC84)

HSP 1 Score: 55.8 bits (133), Expect = 1.050e-8
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
            M S  +++ RL   FE AQ G++ AAL  N  S  DM AFNSA++Q   AS+AA Q++ VKH++ K+I++ +
Sbjct:    1 MFSSDALRRRLDSNFEHAQKGLDAAALDINVFSMDDMHAFNSAIRQSSTASWAANQEIVVKHNLAKAILNEI 72          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: A0A2S5KQR0_9PROT (Serine kinase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2S5KQR0_9PROT)

HSP 1 Score: 55.5 bits (132), Expect = 1.480e-8
Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
            M S  S++HRL  +FER+Q  ++  A   +G S  D+ AFNSA++Q   AS+A  Q+L+VKHS+ K+II+ +
Sbjct:    1 MSSVDSVRHRLDTQFERSQKNMDDIATNLDGASLDDIYAFNSAMRQNATASWAVNQELQVKHSLAKAIINEI 72          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: J2SYQ6_9PSED (HrpF protein n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=J2SYQ6_9PSED)

HSP 1 Score: 51.6 bits (122), Expect = 4.890e-7
Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
            M S  +++HRL   FER Q  ++K+A+  +G S  D  AFN+A++Q   AS+AA Q++ VKH++ K+II+ +
Sbjct:    1 MFSLEAIRHRLDSNFERTQQQLDKSAVEMDGLSPDDWHAFNTAMRQTSTASWAANQEVVVKHNLAKAIINEI 72          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: UPI001BEA3D84 (type III secretion protein HrpF n=1 Tax=Pseudomonas fluorescens TaxID=294 RepID=UPI001BEA3D84)

HSP 1 Score: 50.8 bits (120), Expect = 9.820e-7
Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
            MIS  +++ RL   F+ AQ  ++ AA+     S  DM +FNSAL+Q+  AS+AA Q++ VKH++TK+I++ +
Sbjct:    1 MISSEALRRRLDNNFQSAQHRVDTAAVELRPFSQDDMHSFNSALRQLSTASWAASQEVVVKHNLTKAILNEI 72          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: UPI001C3CC595 (type III secretion protein HrpF n=1 Tax=Pseudomonas farris TaxID=2841207 RepID=UPI001C3CC595)

HSP 1 Score: 50.4 bits (119), Expect = 1.390e-6
Identity = 28/72 (38.89%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
            M+S  +++ RL   F+ AQ G++ AA+  +  S  D  AFNSA++Q   AS+AA Q++ VKH++ K+I++ +
Sbjct:    1 MLSSDALRRRLDNNFDHAQKGLDSAAMNMDAFSQDDWHAFNSAMRQSATASWAANQEVLVKHNLAKAILNEI 72          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: UPI001BEC7313 (type III secretion protein HrpF n=3 Tax=Pseudomonadaceae TaxID=135621 RepID=UPI001BEC7313)

HSP 1 Score: 50.4 bits (119), Expect = 1.390e-6
Identity = 28/72 (38.89%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
            M+S  +++ RL + FE++Q+ ++ AAL  +  S  D  AFN+A++Q   AS+AA Q++ VKH++ K+II+ +
Sbjct:    1 MLSPDALRRRLDHNFEQSQNDLDSAALDLDAFSPQDWHAFNAAIRQSSTASWAANQEIVVKHNLAKAIINEI 72          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: I6LD12_PSEVI (HrpF n=5 Tax=Pseudomonas TaxID=286 RepID=I6LD12_PSEVI)

HSP 1 Score: 51.6 bits (122), Expect = 1.890e-6
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
            M+S  +++ RL   FE AQ  ++ AAL  +  S  D  AFNSA++Q   AS+AA Q++ VKH++ K+II+ +
Sbjct:   66 MLSSDALRRRLDSNFENAQQDLDSAALNMDAFSPEDWHAFNSAIRQSSTASWAANQEIVVKHNLAKAIINEI 137          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: I6LD49_PSEVI (HrpF n=1 Tax=Pseudomonas viridiflava TaxID=33069 RepID=I6LD49_PSEVI)

HSP 1 Score: 51.6 bits (122), Expect = 1.890e-6
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
            M+S  +++ RL   FE AQ  ++ AAL  +  S  D  AFNSA++Q   AS+AA Q++ VKH++ K+II+ +
Sbjct:   66 MLSSDALRRRLDSNFENAQQDLDSAALNMDAFSPEDWHAFNSAIRQSSTASWAANQEIVVKHNLAKAIINEI 137          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: A0A077LP88_9PSED (Type III secretion protein HrpF n=2 Tax=Pseudomonas TaxID=286 RepID=A0A077LP88_9PSED)

HSP 1 Score: 48.1 bits (113), Expect = 1.130e-5
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
            M+S  +++ RL   FE  Q  ++ AAL  +  S  D  AFNSA++Q   AS+AA Q++ VKH++ K+I++ +
Sbjct:    1 MLSSDALRRRLDANFEHTQKDLDTAALNLDAFSPDDWHAFNSAMRQASTASWAANQEIVVKHNLAKAILNEI 72          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7X4LLX4_9VIBR5.200e-943.06Serine kinase n=2 Tax=Vibrio TaxID=662 RepID=A0A7X... [more]
UPI000F55DC841.050e-844.44serine kinase n=1 Tax=Pseudomonas chlororaphis Tax... [more]
A0A2S5KQR0_9PROT1.480e-844.44Serine kinase n=2 Tax=Proteobacteria TaxID=1224 Re... [more]
J2SYQ6_9PSED4.890e-741.67HrpF protein n=2 Tax=unclassified Pseudomonas TaxI... [more]
UPI001BEA3D849.820e-741.67type III secretion protein HrpF n=1 Tax=Pseudomona... [more]
UPI001C3CC5951.390e-638.89type III secretion protein HrpF n=1 Tax=Pseudomona... [more]
UPI001BEC73131.390e-638.89type III secretion protein HrpF n=3 Tax=Pseudomona... [more]
I6LD12_PSEVI1.890e-641.67HrpF n=5 Tax=Pseudomonas TaxID=286 RepID=I6LD12_PS... [more]
I6LD49_PSEVI1.890e-641.67HrpF n=1 Tax=Pseudomonas viridiflava TaxID=33069 R... [more]
A0A077LP88_9PSED1.130e-538.89Type III secretion protein HrpF n=2 Tax=Pseudomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11171contigE-siliculosus-1a_F_contig11171:578..796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size219
Model size219
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927623.2329795-CDS-E-siliculosus-1a_F_contig11171:577..7961622927623.2329795-CDS-E-siliculosus-1a_F_contig11171:577..796Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11171 578..796 +
1696318614.5637822-CDS-E-siliculosus-1a_F_contig11171:577..7961696318614.5637822-CDS-E-siliculosus-1a_F_contig11171:577..796Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11171 578..796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11171.786.1prot_E-siliculosus-1a_F_contig11171.786.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11171 578..796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11171.786.1

>prot_E-siliculosus-1a_F_contig11171.786.1 ID=prot_E-siliculosus-1a_F_contig11171.786.1|Name=mRNA_E-siliculosus-1a_F_contig11171.786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=73bp
MISDTSMQHRLSYRFERAQDGINKAALGGNGSFSDMLAFNSALQQMQGAS
YAAQQQLEVKHSVTKSIIDNMP*
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mRNA from alignment at E-siliculosus-1a_F_contig11171:578..796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11171.786.1 ID=mRNA_E-siliculosus-1a_F_contig11171.786.1|Name=mRNA_E-siliculosus-1a_F_contig11171.786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=219bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11171:578..796+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATTTCGGACACATCAATGCAGCATCGCCTGAGTTACCGTTTTGAGCG TGCTCAGGATGGTATCAACAAGGCGGCCTTGGGAGGGAATGGTTCTTTCT CAGATATGCTAGCTTTCAATTCAGCTTTGCAGCAGATGCAGGGGGCGAGT TATGCAGCACAGCAGCAACTGGAAGTGAAACACAGTGTTACAAAGTCGAT TATCGATAATATGCCCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11171:578..796+

>mRNA_E-siliculosus-1a_F_contig11171.786.1 ID=mRNA_E-siliculosus-1a_F_contig11171.786.1|Name=mRNA_E-siliculosus-1a_F_contig11171.786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11171:578..796+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATTTCGGACACATCAATGCAGCATCGCCTGAGTTACCGTTTTGAGCG
TGCTCAGGATGGTATCAACAAGGCGGCCTTGGGAGGGAATGGTTCTTTCT
CAGATATGCTAGCTTTCAATTCAGCTTTGCAGCAGATGCAGGGGGCGAGT
TATGCAGCACAGCAGCAACTGGAAGTGAAACACAGTGTTACAAAGTCGAT
TATCGATAATATGCCCTGAATGATTTCGGACACATCAATGCAGCATCGCC
TGAGTTACCGTTTTGAGCGTGCTCAGGATGGTATCAACAAGGCGGCCTTG
GGAGGGAATGGTTCTTTCTCAGATATGCTAGCTTTCAATTCAGCTTTGCA
GCAGATGCAGGGGGCGAGTTATGCAGCACAGCAGCAACTGGAAGTGAAAC
ACAGTGTTACAAAGTCGATTATCGATAATATGCCCTGA
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