mRNA_E-siliculosus-1a_F_contig11171.786.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: A0A7X4LLX4_9VIBR (Serine kinase n=2 Tax=Vibrio TaxID=662 RepID=A0A7X4LLX4_9VIBR) HSP 1 Score: 56.6 bits (135), Expect = 5.200e-9 Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 1 MISDTSMQHRLSYRFERAQDGINKAALG-GNGSFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
M S S +HRL +FER Q ++K GN S D+ AFN+A++Q AS+A Q+L+VKH++ K+II+ +
Sbjct: 1 MSSIESTRHRLDMQFERTQKNMDKLVTNLGNASLGDIYAFNAAMRQNATASWAVNQELQVKHNLAKAIINEI 72
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: UPI000F55DC84 (serine kinase n=1 Tax=Pseudomonas chlororaphis TaxID=587753 RepID=UPI000F55DC84) HSP 1 Score: 55.8 bits (133), Expect = 1.050e-8 Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
M S +++ RL FE AQ G++ AAL N S DM AFNSA++Q AS+AA Q++ VKH++ K+I++ +
Sbjct: 1 MFSSDALRRRLDSNFEHAQKGLDAAALDINVFSMDDMHAFNSAIRQSSTASWAANQEIVVKHNLAKAILNEI 72
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: A0A2S5KQR0_9PROT (Serine kinase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2S5KQR0_9PROT) HSP 1 Score: 55.5 bits (132), Expect = 1.480e-8 Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
M S S++HRL +FER+Q ++ A +G S D+ AFNSA++Q AS+A Q+L+VKHS+ K+II+ +
Sbjct: 1 MSSVDSVRHRLDTQFERSQKNMDDIATNLDGASLDDIYAFNSAMRQNATASWAVNQELQVKHSLAKAIINEI 72
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: J2SYQ6_9PSED (HrpF protein n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=J2SYQ6_9PSED) HSP 1 Score: 51.6 bits (122), Expect = 4.890e-7 Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
M S +++HRL FER Q ++K+A+ +G S D AFN+A++Q AS+AA Q++ VKH++ K+II+ +
Sbjct: 1 MFSLEAIRHRLDSNFERTQQQLDKSAVEMDGLSPDDWHAFNTAMRQTSTASWAANQEVVVKHNLAKAIINEI 72
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: UPI001BEA3D84 (type III secretion protein HrpF n=1 Tax=Pseudomonas fluorescens TaxID=294 RepID=UPI001BEA3D84) HSP 1 Score: 50.8 bits (120), Expect = 9.820e-7 Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
MIS +++ RL F+ AQ ++ AA+ S DM +FNSAL+Q+ AS+AA Q++ VKH++TK+I++ +
Sbjct: 1 MISSEALRRRLDNNFQSAQHRVDTAAVELRPFSQDDMHSFNSALRQLSTASWAASQEVVVKHNLTKAILNEI 72
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: UPI001C3CC595 (type III secretion protein HrpF n=1 Tax=Pseudomonas farris TaxID=2841207 RepID=UPI001C3CC595) HSP 1 Score: 50.4 bits (119), Expect = 1.390e-6 Identity = 28/72 (38.89%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
M+S +++ RL F+ AQ G++ AA+ + S D AFNSA++Q AS+AA Q++ VKH++ K+I++ +
Sbjct: 1 MLSSDALRRRLDNNFDHAQKGLDSAAMNMDAFSQDDWHAFNSAMRQSATASWAANQEVLVKHNLAKAILNEI 72
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: UPI001BEC7313 (type III secretion protein HrpF n=3 Tax=Pseudomonadaceae TaxID=135621 RepID=UPI001BEC7313) HSP 1 Score: 50.4 bits (119), Expect = 1.390e-6 Identity = 28/72 (38.89%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
M+S +++ RL + FE++Q+ ++ AAL + S D AFN+A++Q AS+AA Q++ VKH++ K+II+ +
Sbjct: 1 MLSPDALRRRLDHNFEQSQNDLDSAALDLDAFSPQDWHAFNAAIRQSSTASWAANQEIVVKHNLAKAIINEI 72
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: I6LD12_PSEVI (HrpF n=5 Tax=Pseudomonas TaxID=286 RepID=I6LD12_PSEVI) HSP 1 Score: 51.6 bits (122), Expect = 1.890e-6 Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
M+S +++ RL FE AQ ++ AAL + S D AFNSA++Q AS+AA Q++ VKH++ K+II+ +
Sbjct: 66 MLSSDALRRRLDSNFENAQQDLDSAALNMDAFSPEDWHAFNSAIRQSSTASWAANQEIVVKHNLAKAIINEI 137
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: I6LD49_PSEVI (HrpF n=1 Tax=Pseudomonas viridiflava TaxID=33069 RepID=I6LD49_PSEVI) HSP 1 Score: 51.6 bits (122), Expect = 1.890e-6 Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
M+S +++ RL FE AQ ++ AAL + S D AFNSA++Q AS+AA Q++ VKH++ K+II+ +
Sbjct: 66 MLSSDALRRRLDSNFENAQQDLDSAALNMDAFSPEDWHAFNSAIRQSSTASWAANQEIVVKHNLAKAIINEI 137
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Match: A0A077LP88_9PSED (Type III secretion protein HrpF n=2 Tax=Pseudomonas TaxID=286 RepID=A0A077LP88_9PSED) HSP 1 Score: 48.1 bits (113), Expect = 1.130e-5 Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 1 MISDTSMQHRLSYRFERAQDGINKAALGGNG-SFSDMLAFNSALQQMQGASYAAQQQLEVKHSVTKSIIDNM 213
M+S +++ RL FE Q ++ AAL + S D AFNSA++Q AS+AA Q++ VKH++ K+I++ +
Sbjct: 1 MLSSDALRRRLDANFEHTQKDLDTAALNLDAFSPDDWHAFNSAMRQASTASWAANQEIVVKHNLAKAILNEI 72 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11171.786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11171.786.1 >prot_E-siliculosus-1a_F_contig11171.786.1 ID=prot_E-siliculosus-1a_F_contig11171.786.1|Name=mRNA_E-siliculosus-1a_F_contig11171.786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=73bp MISDTSMQHRLSYRFERAQDGINKAALGGNGSFSDMLAFNSALQQMQGASback to top mRNA from alignment at E-siliculosus-1a_F_contig11171:578..796+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11171.786.1 ID=mRNA_E-siliculosus-1a_F_contig11171.786.1|Name=mRNA_E-siliculosus-1a_F_contig11171.786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=219bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11171:578..796+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11171:578..796+ >mRNA_E-siliculosus-1a_F_contig11171.786.1 ID=mRNA_E-siliculosus-1a_F_contig11171.786.1|Name=mRNA_E-siliculosus-1a_F_contig11171.786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11171:578..796+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |