mRNA_E-siliculosus-1a_F_contig1117.782.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1117.782.1
Unique NamemRNA_E-siliculosus-1a_F_contig1117.782.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1117.782.1 vs. uniprot
Match: D7FRL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL7_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.890e-19
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:  310 STWYTIFFAFKACGMRRVTRPWSPGGGREHHASHRRLRFAQAFG 441
            +TW TIFFAFKACGMRRVTRPW+PGGGREHHASHRRLRF +  G
Sbjct:    2 ATWCTIFFAFKACGMRRVTRPWTPGGGREHHASHRRLRFLKPLG 45
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1117.782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRL7_ECTSI1.890e-1984.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1117contigE-siliculosus-1a_F_contig1117:13908..14364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size186
Model size457
Exons1
Ec32 orthologEc-12_002570.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927622.6618512-CDS-E-siliculosus-1a_F_contig1117:13907..140931622927622.6618512-CDS-E-siliculosus-1a_F_contig1117:13907..14093Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 13908..14093 +
1696318614.255793-CDS-E-siliculosus-1a_F_contig1117:13907..140931696318614.255793-CDS-E-siliculosus-1a_F_contig1117:13907..14093Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 13908..14093 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927622.6803868-UTR-E-siliculosus-1a_F_contig1117:14093..143641622927622.6803868-UTR-E-siliculosus-1a_F_contig1117:14093..14364Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1117 14094..14364 +
1696318614.2682574-UTR-E-siliculosus-1a_F_contig1117:14093..143641696318614.2682574-UTR-E-siliculosus-1a_F_contig1117:14093..14364Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1117 14094..14364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1117.782.1prot_E-siliculosus-1a_F_contig1117.782.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1117 13908..14093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1117.782.1

>prot_E-siliculosus-1a_F_contig1117.782.1 ID=prot_E-siliculosus-1a_F_contig1117.782.1|Name=mRNA_E-siliculosus-1a_F_contig1117.782.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=62bp
MTIHRKEKTKRTRTAGYDTAEIPALCRNMCFWGAGVRVGGGSGQCRLALP
AYIILVCRLGP*
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mRNA from alignment at E-siliculosus-1a_F_contig1117:13908..14364+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1117.782.1 ID=mRNA_E-siliculosus-1a_F_contig1117.782.1|Name=mRNA_E-siliculosus-1a_F_contig1117.782.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=457bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1117:13908..14364+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGATACATAGAAAAGAGAAAACCAAGAGAACACGTACAGCGGGGTA
TGATACCGCTGAAATTCCCGCCTTATGCCGTAACATGTGCTTTTGGGGAG
CGGGGGTGCGTGTGGGAGGGGGATCAGGTCAGTGCAGATTAGCGCTGCCT
GCATATATCATACTGGTATGTCGTTTGGGGCCGTAAAACAGGTCAGGTGT
TGGGTGCTGCAGGGAGAGGGAGAGGGGCGCGCGAAGATGTTTCATTGATG
GGATCTGATCAGGCGGGCGCTCGCCTTGAGCATGACGTAGAGAACAAGGT
TCGCGAGGCTCGACATGGTATACTATCTTTTTCGCTTTCAAGGCTTGTGG
AATGCGAAGGGTGACGAGGCCGTGGTCTCCCGGGGGTGGGCGCGAGCACC
ACGCCAGTCACCGCCGCCTTCGCTTCGCTCAAGCCTTTGGGATACATATT
CCGTCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1117:13908..14364+

>mRNA_E-siliculosus-1a_F_contig1117.782.1 ID=mRNA_E-siliculosus-1a_F_contig1117.782.1|Name=mRNA_E-siliculosus-1a_F_contig1117.782.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=372bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1117:13908..14364+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGATACATAGAAAAGAGAAAACCAAGAGAACACGTACAGCGGGGTA
TGATACCGCTGAAATTCCCGCCTTATGCCGTAACATGTGCTTTTGGGGAG
CGGGGGTGCGTGTGGGAGGGGGATCAGGTCAGTGCAGATTAGCGCTGCCT
GCATATATCATACTGGTATGTCGTTTGGGGCCGTAAATGACGATACATAG
AAAAGAGAAAACCAAGAGAACACGTACAGCGGGGTATGATACCGCTGAAA
TTCCCGCCTTATGCCGTAACATGTGCTTTTGGGGAGCGGGGGTGCGTGTG
GGAGGGGGATCAGGTCAGTGCAGATTAGCGCTGCCTGCATATATCATACT
GGTATGTCGTTTGGGGCCGTAA
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