mRNA_E-siliculosus-1a_F_contig11151.775.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11151.775.1 vs. uniprot
Match: D8LFI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI6_ECTSI) HSP 1 Score: 446 bits (1147), Expect = 1.410e-140 Identity = 252/263 (95.82%), Postives = 254/263 (96.58%), Query Frame = 3
Query: 3 VLADVMTALCANLRPAPFHYGTIALRLLGKLGGRNRRFLSEPMLLPPSTGTSWHTRDCFKLEMEWSISPDDNLGPPGDSRRRFTLPMDLIFGKVCALLNKLSGKVQVAPAVKNAASKNASXXXXXXXXXXXXXXXXXXXX-SGEGVDGSE-RKSVIRDTLQESLSRHKRLAFRLVVSCMAPVLAGGASLPAITEEEIVAAEKKCRMEEGGADMLGRPPESFREAVLPEHLRYKAQF*YKARMMSKGIAALIVSASDPDLKETA 785
VLADVMTALCANLRPAPFHYGTIALRLLGKLGGRNRRFLSEPMLLPPSTGTSWHTRDCFKLEMEWS SPDDNLGPPGDSRRRFTLPMDLIFGKVCALLNKLSGKVQVAPA KNAAS XXXXXXXXXXXXXXXXXXXX SGEGVDGSE RKSVIRDTLQESLSRHKRLAFRLV+SCMAPVLAGGASLPAITEEEIVAAEKKCRMEEGGADMLGRPPESFREAVLPEHLRYKAQF YKARMMSKGIAAL+VSASDPDLKETA
Sbjct: 1001 VLADVMTALCANLRPAPFHYGTIALRLLGKLGGRNRRFLSEPMLLPPSTGTSWHTRDCFKLEMEWSFSPDDNLGPPGDSRRRFTLPMDLIFGKVCALLNKLSGKVQVAPAAKNAASXXXXXXXXXXXXXXXXXXXXXXXXXSGEGVDGSEQRKSVIRDTLQESLSRHKRLAFRLVLSCMAPVLAGGASLPAITEEEIVAAEKKCRMEEGGADMLGRPPESFREAVLPEHLRYKAQFEYKARMMSKGIAALLVSASDPDLKETA 1263
BLAST of mRNA_E-siliculosus-1a_F_contig11151.775.1 vs. uniprot
Match: A0A6H5KAF7_9PHAE (FAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF7_9PHAE) HSP 1 Score: 320 bits (821), Expect = 8.820e-97 Identity = 170/199 (85.43%), Postives = 172/199 (86.43%), Query Frame = 3
Query: 189 MEWSISPDDNLGPPGDSRRRFTLPMDLIFGKVCALLNKLSGKVQVAPAVKNAASKNASXXXXXXXXXXXXXXXXXXXXSGEGVDGSERKSVIRDTLQESLSRHKRLAFRLVVSCMAPVLAGGASLPAITEEEIVAAEKKCRMEEGGADMLGRPPESFREAVLPEHLRYKAQF*YKARMMSKGIAALIVSASDPDLKETA 785
MEWS SPDDNLGPPGDSRRRFTLPMDLIFGKVCALLNKLSGKVQVAPAVKNAASKNAS + EGVDGSERKSVIRDTLQESLSRHKRLAFRLV+SCMAPVLAGG SLPAITEEEIVAAEKKCRMEEGGADML RPPESFREAVLP HLRYKAQF YKARMMSKGIAALIVSASDPDLKE A
Sbjct: 1 MEWSFSPDDNLGPPGDSRRRFTLPMDLIFGKVCALLNKLSGKVQVAPAVKNAASKNASSAGAQKKSVGTAGAA-----TDEGVDGSERKSVIRDTLQESLSRHKRLAFRLVLSCMAPVLAGGVSLPAITEEEIVAAEKKCRMEEGGADMLDRPPESFREAVLPAHLRYKAQFEYKARMMSKGIAALIVSASDPDLKEAA 194
BLAST of mRNA_E-siliculosus-1a_F_contig11151.775.1 vs. uniprot
Match: A0A835YLJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ6_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.500e-11 Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 3
Query: 12 DVMTALCANLRPAPFHYGTIALRLLGKLGGRNRRFLSEPMLLPPSTGTSWHTRDCFKL 185
D+M ALC+NLRP P+ +GTIALRL+GKLGGRNR FL E M LP + T W+ C ++
Sbjct: 284 DIMAALCSNLRPPPYPFGTIALRLVGKLGGRNRHFLPEAMALPMAP-TPWNADVCLQV 340
BLAST of mRNA_E-siliculosus-1a_F_contig11151.775.1 vs. uniprot
Match: A0A1E7FFP1_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFP1_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 4.580e-11 Identity = 45/122 (36.89%), Postives = 62/122 (50.82%), Query Frame = 3
Query: 3 VLADVMTALCANLRPAPFHYGTIALRLLGKLGGRNRRFLSEPMLLPPSTGTSWHTRDCFKLEMEWSISP---DDNL-GPPGDSRRRFTLPMDLIFGKVCALLNKLSGKVQVAPAVKNAASKN 356
V +M AL +LRPAP+ YG + LRLLGKLGG+NRR L EPM + S +R+ LE WS + +N+ GD ++ + L + LL + S K + P K KN
Sbjct: 940 VFVSLMKALSMHLRPAPYPYGLLTLRLLGKLGGKNRRVLREPMDIADPKSFSESSRESIGLEFAWSANARNESENMDASEGDCIQQSMFEIHLPIQRCLELLKRTSHKNEDKPESKGGILKN 1061
BLAST of mRNA_E-siliculosus-1a_F_contig11151.775.1 vs. uniprot
Match: A0A7R9Z3Y3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z3Y3_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 7.010e-11 Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 3
Query: 3 VLADVMTALCANLRPAPFHYGTIALRLLGKLGGRNRRFLSEPMLLPPSTGTSWHTRDCFKLEMEWSISPDDNLGPPGD 236
VL D+M++L +L+PAP+ YG + LRLLGKLGGRNR+FLSE + L R + WS SPD GD
Sbjct: 70 VLRDLMSSLVLHLKPAPYPYGLLTLRLLGKLGGRNRKFLSEALELDALREEDACGRTEMSVRCSWSKSPDTFFKAGGD 147
BLAST of mRNA_E-siliculosus-1a_F_contig11151.775.1 vs. uniprot
Match: B7FPY1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FPY1_PHATC) HSP 1 Score: 69.7 bits (169), Expect = 9.020e-10 Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 3
Query: 3 VLADVMTALCANLRPAPFHYGTIALRLLGKLGGRNRRFLSEPMLLPPSTGTSWHTRDCFKLEMEWSISPDDNLGPPGDSRRRFTLPMD 266
+L+ +M +L +LRPAP+ YG + LRLLGKLGG+NR FL EP+ L T TS + +++ W + D+N P + LP+D
Sbjct: 952 LLSAIMRSLSRHLRPAPYPYGLLTLRLLGKLGGKNRHFLREPLHL---TNTSNFNTEAVEVDCSWIVG-DENSVKPLKTTTTIALPLD 1035
BLAST of mRNA_E-siliculosus-1a_F_contig11151.775.1 vs. uniprot
Match: A0A1Z5K5L7_FISSO (Transformation/transcription domain-associated protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5L7_FISSO) HSP 1 Score: 67.8 bits (164), Expect = 3.980e-9 Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3
Query: 3 VLADVMTALCANLRPAPFHYGTIALRLLGKLGGRNRRFLSEPMLLPPSTGTSWHTRDCFKLEMEWS 200
+L+ +M AL +LRPAP+ YG + LRLLGKLGG+NR FL EPM LPP G CF + W+
Sbjct: 890 ILSCLMVALSRHLRPAPYPYGLLTLRLLGKLGGKNREFLREPMSLPP--GPEMSDNYCF-VRCRWN 952
BLAST of mRNA_E-siliculosus-1a_F_contig11151.775.1 vs. uniprot
Match: A0A7S2EPR7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EPR7_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 2.390e-8 Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 3
Query: 3 VLADVMTALCANLRPAPFHYGTIALRLLGKLGGRNRRFLSEPMLLPPSTGTSWHTRDCFKLEMEWSISPDDNLGPPGDSR 242
+L ++M +L +L PAP+ YG + LRLLGKLGGRNRRFL E M + + +E W SPD + G +++
Sbjct: 95 ILTELMVSLTNHLHPAPYPYGLLTLRLLGKLGGRNRRFLQEAMDIQVCNEDGYDV-PVLCIECAWMKSPDVDYGDDDETK 173
BLAST of mRNA_E-siliculosus-1a_F_contig11151.775.1 vs. uniprot
Match: A0A2I0AZC0_9ASPA (Serine/threonine-protein kinase ATR n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AZC0_9ASPA) HSP 1 Score: 65.1 bits (157), Expect = 3.160e-8 Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 3
Query: 3 VLADVMTALCANLRPAPFHYGTIALRLLGKLGGRNRRFLSEPMLL 137
V++DV+ AL ++LRP P+ +GT AL+LLGKLGGRNRRFL EP+LL
Sbjct: 347 VISDVILALWSHLRPLPYPWGTKALQLLGKLGGRNRRFLKEPLLL 391
BLAST of mRNA_E-siliculosus-1a_F_contig11151.775.1 vs. uniprot
Match: A0A6A3AUN7_HIBSY (Uncharacterized protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AUN7_HIBSY) HSP 1 Score: 65.1 bits (157), Expect = 3.170e-8 Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 3
Query: 3 VLADVMTALCANLRPAPFHYGTIALRLLGKLGGRNRRFLSEPMLLPPSTGTSWHTRDCFKLEMEWSISPDDNLG 224
V+++V+ AL ++LRPAP+ +G AL+LLGKLGGRNRRFL EP+ L + C L + I DD +G
Sbjct: 717 VMSEVILALWSHLRPAPYPWGGKALQLLGKLGGRNRRFLKEPLAL------EFPLDKCINLAVAAVIHKDDGMG 784 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11151.775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11151.775.1 >prot_E-siliculosus-1a_F_contig11151.775.1 ID=prot_E-siliculosus-1a_F_contig11151.775.1|Name=mRNA_E-siliculosus-1a_F_contig11151.775.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=230bp MTALCANLRPAPFHYGTIALRLLGKLGGRNRRFLSEPMLLPPSTGTSWHTback to top mRNA from alignment at E-siliculosus-1a_F_contig11151:190..1946- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11151.775.1 ID=mRNA_E-siliculosus-1a_F_contig11151.775.1|Name=mRNA_E-siliculosus-1a_F_contig11151.775.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1757bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11151:190..1946- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11151:190..1946- >mRNA_E-siliculosus-1a_F_contig11151.775.1 ID=mRNA_E-siliculosus-1a_F_contig11151.775.1|Name=mRNA_E-siliculosus-1a_F_contig11151.775.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1380bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11151:190..1946- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |