mRNA_E-siliculosus-1a_F_contig11143.770.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11143.770.1
Unique NamemRNA_E-siliculosus-1a_F_contig11143.770.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11143.770.1 vs. uniprot
Match: UPI001F0D46A7 (XdhC family protein n=1 Tax=Halomonas neptunia TaxID=115551 RepID=UPI001F0D46A7)

HSP 1 Score: 454 bits (1167), Expect = 4.920e-156
Identity = 226/265 (85.28%), Postives = 246/265 (92.83%), Query Frame = 1 
Query:    1 CIEEDFIARLHSGEFGEPVERVSYGGEDGSANVHLPCGGSLEVLVERLEPTTENLTHLEVIHATLLGRQPLTRCIKLDGSGKRFTPPNSSEPAVTFNMASVNIRIGPALRLIIAGISSISSPCALFAHSLGFEVIVCDPRSEARKNFSVPGVEMQAVLPSVFISSGGCHANTAIVALTHDPRIDDLAMMEAVRTDAFYIGVMGSHQTSQQRAERLLRSGDLTQQQVERIVMPIGLSLGSKTPAEIALAVMADIMRIYRGKARNEL 795
            C+EEDFI RL  GEF EP++RV YGGE+G+AN+ LPCGGSLEVLVERL P TENLTHLEV+HATLLGRQPLTRCIKLDGSGKRF P N ++PAV+F+ ASVNIRIGPALRLIIAG+SSISSPCALFA SLGFEVIVCDPR EARKNF+VPGVEMQAVLPSVFI+SGGCHANTA+VALTHDPRIDDLAM+EAVRTDAFYIGVMGS QTSQQRAERLLRSG LT+ QV RI MPIGL+LGSKTPAEIALAVMADI+R+YRGKARNEL
Sbjct:   58 CVEEDFIERLQKGEFDEPLQRVRYGGENGAANIRLPCGGSLEVLVERLAPNTENLTHLEVMHATLLGRQPLTRCIKLDGSGKRFNPSNITDPAVSFDTASVNIRIGPALRLIIAGVSSISSPCALFAQSLGFEVIVCDPREEARKNFNVPGVEMQAVLPSVFIASGGCHANTAVVALTHDPRIDDLAMIEAVRTDAFYIGVMGSKQTSQQRAERLLRSGGLTETQVARIAMPIGLNLGSKTPAEIALAVMADIVRLYRGKARNEL 322
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BLAST of mRNA_E-siliculosus-1a_F_contig11143.770.1 vs. uniprot
Match: A0A3T1DZR2_9GAMM (Uncharacterized protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=A0A3T1DZR2_9GAMM)

HSP 1 Score: 440 bits (1131), Expect = 8.680e-151
Identity = 220/265 (83.02%), Postives = 240/265 (90.57%), Query Frame = 1 
Query:    1 CIEEDFIARLHSGEFGEPVERVSYGGEDGSANVHLPCGGSLEVLVERLEPTTENLTHLEVIHATLLGRQPLTRCIKLDGSGKRFTPPNSSEPAVTFNMASVNIRIGPALRLIIAGISSISSPCALFAHSLGFEVIVCDPRSEARKNFSVPGVEMQAVLPSVFISSGGCHANTAIVALTHDPRIDDLAMMEAVRTDAFYIGVMGSHQTSQQRAERLLRSGDLTQQQVERIVMPIGLSLGSKTPAEIALAVMADIMRIYRGKARNEL 795
            C+EEDFIARL  GEF EPV+RV YGG+  SAN+ LPCGGSLEVLVERL P TENLTHLEV+HATLLGRQPLTRCIKLDGSGKRF P  ++ P VTF+ AS NIRIGPALRLIIAGISSI+SPCALFA SLGFEVIVCDPR +ARKNF+VP VE+QAVLPSVFISSGGCHANTA+VALTHDPRIDDLAM+EAVRTDAFYIGVMGSHQTSQQRAERL RSG LT+ Q+ RIVMPIGL+LGSKTPAEIALAVMADI+R+YRGK R+ L
Sbjct:   44 CVEEDFIARLQKGEFNEPVQRVRYGGDADSANIRLPCGGSLEVLVERLAPNTENLTHLEVMHATLLGRQPLTRCIKLDGSGKRFNPSKNTAPTVTFDTASANIRIGPALRLIIAGISSITSPCALFAQSLGFEVIVCDPREDARKNFNVPDVEIQAVLPSVFISSGGCHANTAVVALTHDPRIDDLAMIEAVRTDAFYIGVMGSHQTSQQRAERLQRSGGLTETQLARIVMPIGLNLGSKTPAEIALAVMADIVRLYRGKERHAL 308
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BLAST of mRNA_E-siliculosus-1a_F_contig11143.770.1 vs. uniprot
Match: A0A1U9RDI1_9GAMM (XshC-Cox1 family protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A1U9RDI1_9GAMM)

HSP 1 Score: 434 bits (1115), Expect = 3.820e-148
Identity = 214/265 (80.75%), Postives = 239/265 (90.19%), Query Frame = 1 
Query:    1 CIEEDFIARLHSGEFGEPVERVSYGGEDGSANVHLPCGGSLEVLVERLEPTTENLTHLEVIHATLLGRQPLTRCIKLDGSGKRFTPPNSSEPAVTFNMASVNIRIGPALRLIIAGISSISSPCALFAHSLGFEVIVCDPRSEARKNFSVPGVEMQAVLPSVFISSGGCHANTAIVALTHDPRIDDLAMMEAVRTDAFYIGVMGSHQTSQQRAERLLRSGDLTQQQVERIVMPIGLSLGSKTPAEIALAVMADIMRIYRGKARNEL 795
            C+EEDFIARL +GEF EPV+RV YGGED S ++ LPCGGSLEVLVERL P TENL HLEV+HATLLGRQPLTRCI+LDGSGK F P N++EP VTF+ A VNIRIGPALRLIIAG+SSISSPCALFA SLGFEVIVCDPR E RKNF++PGVE+QAVLPSVFI+SG CHANTA+VALTHDPRIDDLAM+EAVRT+AFYIGVMGS QTSQQRA+RLLRSG LT+ QV RI MP+GL+LGSKTPAEIALAVMADI+R+YRGK R+ L
Sbjct:   58 CVEEDFIARLQNGEFEEPVQRVRYGGEDSSTDIRLPCGGSLEVLVERLAPNTENLIHLEVMHATLLGRQPLTRCIRLDGSGKHFNPSNNTEPTVTFDTARVNIRIGPALRLIIAGVSSISSPCALFAQSLGFEVIVCDPRDEIRKNFNIPGVEVQAVLPSVFIASGACHANTAVVALTHDPRIDDLAMIEAVRTEAFYIGVMGSQQTSQQRAKRLLRSGGLTETQVARIAMPVGLNLGSKTPAEIALAVMADIVRLYRGKERHAL 322
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BLAST of mRNA_E-siliculosus-1a_F_contig11143.770.1 vs. uniprot
Match: A0A1A9R114_9GAMM (XshC-Cox1 family protein n=12 Tax=root TaxID=1 RepID=A0A1A9R114_9GAMM)

HSP 1 Score: 433 bits (1114), Expect = 5.420e-148
Identity = 219/265 (82.64%), Postives = 239/265 (90.19%), Query Frame = 1 
Query:    1 CIEEDFIARLHSGEFGEPVERVSYGGEDGSANVHLPCGGSLEVLVERLEPTTENLTHLEVIHATLLGRQPLTRCIKLDGSGKRFTPPNSSEPAVTFNMASVNIRIGPALRLIIAGISSISSPCALFAHSLGFEVIVCDPRSEARKNFSVPGVEMQAVLPSVFISSGGCHANTAIVALTHDPRIDDLAMMEAVRTDAFYIGVMGSHQTSQQRAERLLRSGDLTQQQVERIVMPIGLSLGSKTPAEIALAVMADIMRIYRGKARNEL 795
            C+EEDFIARL  GEF EPV+RV YGGE  S N+ LPCGGSL+VLVERL P TENLTHLEV+HATLLGRQPLTR IKLDGSGKRF P N+S PAVTF+  SVNIRIGPALRLIIAGISSISSPCALFA SLGFEVIVCDPR  ARKNF+V GVE+QAVLPSVFI+SGGCHANTA+VALTHDPRIDDLAM+EAVRT+AFYIGVMGS QTSQQRAERLLRSG LT++QV +I MPIGL+LGSKTPAEIALAVMADI+R+YRGK R+ L
Sbjct:   58 CVEEDFIARLQKGEFDEPVKRVRYGGEGDSTNIRLPCGGSLDVLVERLAPNTENLTHLEVMHATLLGRQPLTRYIKLDGSGKRFNPANNSTPAVTFDTNSVNIRIGPALRLIIAGISSISSPCALFAQSLGFEVIVCDPRDAARKNFAVTGVEVQAVLPSVFIASGGCHANTAVVALTHDPRIDDLAMIEAVRTEAFYIGVMGSQQTSQQRAERLLRSGGLTERQVAKIAMPIGLNLGSKTPAEIALAVMADIVRLYRGKQRHAL 322
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BLAST of mRNA_E-siliculosus-1a_F_contig11143.770.1 vs. uniprot
Match: A0A455UER8_9GAMM (Uncharacterized protein n=2 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A455UER8_9GAMM)

HSP 1 Score: 433 bits (1114), Expect = 5.420e-148
Identity = 214/265 (80.75%), Postives = 241/265 (90.94%), Query Frame = 1 
Query:    1 CIEEDFIARLHSGEFGEPVERVSYGGEDGSANVHLPCGGSLEVLVERLEPTTENLTHLEVIHATLLGRQPLTRCIKLDGSGKRFTPPNSSEPAVTFNMASVNIRIGPALRLIIAGISSISSPCALFAHSLGFEVIVCDPRSEARKNFSVPGVEMQAVLPSVFISSGGCHANTAIVALTHDPRIDDLAMMEAVRTDAFYIGVMGSHQTSQQRAERLLRSGDLTQQQVERIVMPIGLSLGSKTPAEIALAVMADIMRIYRGKARNEL 795
            C+EEDFIARLHSGEF +PV+++ YG +  +A++ LPCGGS+EVLVE+L PTTENLTHLEV+HATLLGRQ LTRC+KLDGSGKRF P   +EPAVTF+  SVNIRIGPALRLIIAGISSISSPCALFA SLGFEVIVCDPR E RKNF VPGVE+QAVLPSVFI+SGGCHANTA+VALTHDPRIDDLAM+EAVRT+AFYIGVMGSHQTSQQR ERLLRSG LT+ QV +IVMPIGL+LGSKTPAEIALAV+ADI+R+ RGKAR+ L
Sbjct:   58 CVEEDFIARLHSGEFDKPVQQIRYGDDSSAASLRLPCGGSMEVLVEQLSPTTENLTHLEVVHATLLGRQSLTRCVKLDGSGKRFNPATLTEPAVTFDATSVNIRIGPALRLIIAGISSISSPCALFAQSLGFEVIVCDPRDEVRKNFDVPGVEVQAVLPSVFIASGGCHANTAVVALTHDPRIDDLAMIEAVRTEAFYIGVMGSHQTSQQRKERLLRSGGLTETQVAKIVMPIGLNLGSKTPAEIALAVLADIIRLCRGKARDAL 322
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BLAST of mRNA_E-siliculosus-1a_F_contig11143.770.1 vs. uniprot
Match: A0A2G2KNE4_HALSX (XshC-Cox1 family protein n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A2G2KNE4_HALSX)

HSP 1 Score: 431 bits (1108), Expect = 4.400e-147
Identity = 215/265 (81.13%), Postives = 237/265 (89.43%), Query Frame = 1 
Query:    1 CIEEDFIARLHSGEFGEPVERVSYGGEDGSANVHLPCGGSLEVLVERLEPTTENLTHLEVIHATLLGRQPLTRCIKLDGSGKRFTPPNSSEPAVTFNMASVNIRIGPALRLIIAGISSISSPCALFAHSLGFEVIVCDPRSEARKNFSVPGVEMQAVLPSVFISSGGCHANTAIVALTHDPRIDDLAMMEAVRTDAFYIGVMGSHQTSQQRAERLLRSGDLTQQQVERIVMPIGLSLGSKTPAEIALAVMADIMRIYRGKARNEL 795
            C+EEDFIARL  GEF EPV+RV YG + GSAN+ LPCGGSLE+LVERL P TE LTHLEV+HATLLGRQPLTRCI LDGSGKRF P   +EP VTF+ ASVNIRIGPALRLIIAGISS+S+PCALFA +LGFEVIVCDPR EAR+NF+V GVEMQAVLPSVFI+SGGCHANTA+VALTHDPRIDDLAM+EAVRT AFYIGVMGSHQTSQQRAERL RSG LT+ Q+ RIVMPIGL+LGSK PAEIALAVMADI+R+YRGK R+ L
Sbjct:   58 CVEEDFIARLQKGEFNEPVQRVRYGDDTGSANIRLPCGGSLEILVERLVPNTEKLTHLEVMHATLLGRQPLTRCIALDGSGKRFNPSKHTEPTVTFDTASVNIRIGPALRLIIAGISSVSAPCALFAQTLGFEVIVCDPRDEARQNFAVAGVEMQAVLPSVFIASGGCHANTAVVALTHDPRIDDLAMIEAVRTXAFYIGVMGSHQTSQQRAERLQRSGGLTETQLARIVMPIGLNLGSKXPAEIALAVMADIVRLYRGKERHAL 322
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BLAST of mRNA_E-siliculosus-1a_F_contig11143.770.1 vs. uniprot
Match: A0A455UYN3_9GAMM (XdhC_C domain-containing protein n=1 Tax=Halomonas axialensis TaxID=115555 RepID=A0A455UYN3_9GAMM)

HSP 1 Score: 402 bits (1034), Expect = 4.590e-137
Identity = 202/244 (82.79%), Postives = 224/244 (91.80%), Query Frame = 1 
Query:   64 VSYGGEDGSANVHLPCGGSLEVLVERLEPTTENLTHLEVIHATLLGRQPLTRCIKLDGSGKRFTPPNSSEPAVTFNMASVNIRIGPALRLIIAGISSISSPCALFAHSLGFEVIVCDPRSEARKNFSVPGVEMQAVLPSVFISSGGCHANTAIVALTHDPRIDDLAMMEAVRTDAFYIGVMGSHQTSQQRAERLLRSGDLTQQQVERIVMPIGLSLGSKTPAEIALAVMADIMRIYRGKARNEL 795
            + YGG+  SAN+ LPCGGSLE+LVERL P TENLTHLEV+HATLLGRQPLTRCIKLDGSGKRF P N++E  VTF+ ASVNIRIGPALRLIIAGIS+IS+PCALFA SLGFEVIVCDPR EAR+NF+V GVE+QAVLPSVFI+SGGCHANTA+VALTHDPRIDDLAM+EAVRTDAFYIGVMGS QTSQQRAERLLRSG LT+ Q+ RIVMPIGL+LGSKTPAEIALAVMADI+R+YRGK R+ L
Sbjct:    1 MRYGGDANSANIRLPCGGSLEILVERLAPNTENLTHLEVMHATLLGRQPLTRCIKLDGSGKRFNPSNNTESTVTFDTASVNIRIGPALRLIIAGISAISAPCALFAQSLGFEVIVCDPRDEARQNFAVAGVEVQAVLPSVFITSGGCHANTAVVALTHDPRIDDLAMIEAVRTDAFYIGVMGSQQTSQQRAERLLRSGGLTETQLARIVMPIGLNLGSKTPAEIALAVMADIVRLYRGKERHAL 244
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BLAST of mRNA_E-siliculosus-1a_F_contig11143.770.1 vs. uniprot
Match: G4F598_9GAMM (Uncharacterized protein n=3 Tax=Halomonas TaxID=2745 RepID=G4F598_9GAMM)

HSP 1 Score: 397 bits (1020), Expect = 1.450e-133
Identity = 197/260 (75.77%), Postives = 222/260 (85.38%), Query Frame = 1 
Query:    1 CIEEDFIARLHSGEFGEPVERVSYGGEDGSANVHLPCGGSLEVLVERLEPTTENLTHLEVIHATLLGRQPLTRCIKLDGSGKRFTPPNSSEPAVTFNMASVNIRIGPALRLIIAGISSISSPCALFAHSLGFEVIVCDPRSEARKNFSVPGVEMQAVLPSVFISSGGCHANTAIVALTHDPRIDDLAMMEAVRTDAFYIGVMGSHQTSQQRAERLLRSGDLTQQQVERIVMPIGLSLGSKTPAEIALAVMADIMRIYRGK 780
            C+EEDFIARL  GEF +P +R+ YGG D S  V LPCGGSLEVLVE+L P+ +NL HLEV+HATLLGRQPLTRCI L    KRF P   SEPAVTF+ +SVN+RIGPALRLIIAGISS++SPCALFA SLGFEVIVCDP  +ARKNF VP VE+QA+LPSVFI+SGGCHANTA+VAL+HDPRIDDLAM+EAVRT+AFYIGVMGS  TSQQRAERLLRS  L   Q+ RI MPIGL+LGSKTP+EIALAVMADI+R YRGK
Sbjct:   58 CVEEDFIARLQRGEFDQPAQRIMYGGVDSSTTVRLPCGGSLEVLVEQLTPSADNLVHLEVMHATLLGRQPLTRCISLSDGRKRFNPSTLSEPAVTFDASSVNVRIGPALRLIIAGISSVTSPCALFAQSLGFEVIVCDPNDDARKNFKVPSVEVQAILPSVFIASGGCHANTAVVALSHDPRIDDLAMIEAVRTEAFYIGVMGSQPTSQQRAERLLRSSGLKDTQLARITMPIGLNLGSKTPSEIALAVMADIVRHYRGK 317
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BLAST of mRNA_E-siliculosus-1a_F_contig11143.770.1 vs. uniprot
Match: UPI00201F8C35 (XdhC family protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201F8C35)

HSP 1 Score: 370 bits (949), Expect = 5.350e-123
Identity = 183/265 (69.06%), Postives = 219/265 (82.64%), Query Frame = 1 
Query:    1 CIEEDFIARLHSGEFGEPVERVSYGGEDGSANVHLPCGGSLEVLVERLEPTTENLTHLEVIHATLLGRQPLTRCIKLDGSGKRFTPPNSSEPAVTFNMASVNIRIGPALRLIIAGISSISSPCALFAHSLGFEVIVCDPRSEARKNFSVPGVEMQAVLPSVFISSGGCHANTAIVALTHDPRIDDLAMMEAVRTDAFYIGVMGSHQTSQQRAERLLRSGDLTQQQVERIVMPIGLSLGSKTPAEIALAVMADIMRIYRGKARNEL 795
            C+EEDF+ RLH+GEF +PV+ + YGG +G++ V LPCGG L+VLVE L+P    LTHLEVIHATLLGR PL R IKLDGSG+   P ++  PAVT +  +V IRIGPALRL+IAGIS+I++PCALFA SLGFEVIVCDPR + R+ F+ PGVE+QAV P+ FI+SGGCHA TA+VALTHDPR+DDL MMEAVRTDAFYIGVMGS   S +RAERL RSG L++ Q++RI MPIGL+LGSKTPAEIALAVMADI+R +RGK R EL
Sbjct:   58 CVEEDFLTRLHNGEFSDPVQVIHYGGGEGASQVQLPCGGRLDVLVEYLKPNESTLTHLEVIHATLLGRHPLIRRIKLDGSGRNLLPADAPGPAVTRDAHTVAIRIGPALRLVIAGISAIATPCALFATSLGFEVIVCDPRDDIRRRFAAPGVEVQAVHPATFIASGGCHAGTAVVALTHDPRLDDLVMMEAVRTDAFYIGVMGSTANSHKRAERLQRSGGLSEAQLQRITMPIGLALGSKTPAEIALAVMADIVRTHRGKHRQEL 322
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11143.770.1 vs. uniprot
Match: A0A243SZZ8_9GAMM (XshC-Cox1 family protein n=7 Tax=Halomonas TaxID=2745 RepID=A0A243SZZ8_9GAMM)

HSP 1 Score: 357 bits (915), Expect = 8.200e-118
Identity = 181/268 (67.54%), Postives = 211/268 (78.73%), Query Frame = 1 
Query:    1 CIEEDFIARLHSGEFGEPVERVSYGG---EDGSANVHLPCGGSLEVLVERLEPTTENLTHLEVIHATLLGRQPLTRCIKLDGSGKRFTPPNSSEPAVTFNMASVNIRIGPALRLIIAGISSISSPCALFAHSLGFEVIVCDPRSEARKNFSVPGVEMQAVLPSVFISSGGCHANTAIVALTHDPRIDDLAMMEAVRTDAFYIGVMGSHQTSQQRAERLLRSGDLTQQQVERIVMPIGLSLGSKTPAEIALAVMADIMRIYRGKARNEL 795
            C+EEDF+ RLH GEF  PV+RV YGG   E G++ V LPCGGSLEVLVERLEP    LTHLEV+HATLLGR+ L R + LDG    F    +  PA+      + +R+GPALRLIIAGIS +S  CA FA +LGFEVIVCDPR +AR+ F+VPGVE+QAV+PS FI+SG CHA TA+VALTHDPRIDDLAM+EAVRTDAFYIGVMGS QTS+QR  RL RSG L  +Q+ RI MPIGL LGSKTPAEIALAVMADI+R++RGKAR+ L
Sbjct:   58 CVEEDFLERLHQGEFAGPVQRVRYGGQGSEPGASRVRLPCGGSLEVLVERLEPDAATLTHLEVVHATLLGRRALIRRVPLDGRRAHFVLAEAPGPAILREEGVIGVRLGPALRLIIAGISPVSQACASFASTLGFEVIVCDPREKARREFAVPGVEVQAVMPSTFIASGACHAATAVVALTHDPRIDDLAMIEAVRTDAFYIGVMGSRQTSRQREARLRRSGGLGSEQIARITMPIGLGLGSKTPAEIALAVMADIVRVHRGKARDAL 325
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11143.770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F0D46A74.920e-15685.28XdhC family protein n=1 Tax=Halomonas neptunia Tax... [more]
A0A3T1DZR2_9GAMM8.680e-15183.02Uncharacterized protein n=1 Tax=Halomonas olivaria... [more]
A0A1U9RDI1_9GAMM3.820e-14880.75XshC-Cox1 family protein n=2 Tax=Halomonas TaxID=2... [more]
A0A1A9R114_9GAMM5.420e-14882.64XshC-Cox1 family protein n=12 Tax=root TaxID=1 Rep... [more]
A0A455UER8_9GAMM5.420e-14880.75Uncharacterized protein n=2 Tax=Halomonas sulfidae... [more]
A0A2G2KNE4_HALSX4.400e-14781.13XshC-Cox1 family protein n=1 Tax=Halomonas sp. Tax... [more]
A0A455UYN3_9GAMM4.590e-13782.79XdhC_C domain-containing protein n=1 Tax=Halomonas... [more]
G4F598_9GAMM1.450e-13375.77Uncharacterized protein n=3 Tax=Halomonas TaxID=27... [more]
UPI00201F8C355.350e-12369.06XdhC family protein n=1 Tax=Halomonas olivaria Tax... [more]
A0A243SZZ8_9GAMM8.200e-11867.54XshC-Cox1 family protein n=7 Tax=Halomonas TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11143contigE-siliculosus-1a_F_contig11143:3..1380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size798
Model size1378
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000
Best eggNOG OGNA|NA|NA
Best tax levelGammaproteobacteria
COG Functional cat.O
EggNOG OGs1MXKU@1224,1RQRT@1236,COG1975@1,COG1975@2
EggNOG free text desc.Xanthine and CO dehydrogenases maturation factor XdhC CoxF family
KEGG koko:K07402
Preferred nameyagQ
Seed eggNOG ortholog1415755.JQLV01000001_gene3412
Seed ortholog evalue3.6e-119
Seed ortholog score434.5
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927620.1646523-CDS-E-siliculosus-1a_F_contig11143:2..8001622927620.1646523-CDS-E-siliculosus-1a_F_contig11143:2..800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11143 3..800 +
1696318613.2527697-CDS-E-siliculosus-1a_F_contig11143:2..8001696318613.2527697-CDS-E-siliculosus-1a_F_contig11143:2..800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11143 3..800 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927620.1879642-UTR-E-siliculosus-1a_F_contig11143:800..13801622927620.1879642-UTR-E-siliculosus-1a_F_contig11143:800..1380Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11143 801..1380 +
1696318613.2679634-UTR-E-siliculosus-1a_F_contig11143:800..13801696318613.2679634-UTR-E-siliculosus-1a_F_contig11143:800..1380Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11143 801..1380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11143.770.1prot_E-siliculosus-1a_F_contig11143.770.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11143 3..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11143.770.1

>prot_E-siliculosus-1a_F_contig11143.770.1 ID=prot_E-siliculosus-1a_F_contig11143.770.1|Name=mRNA_E-siliculosus-1a_F_contig11143.770.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=266bp
CIEEDFIARLHSGEFGEPVERVSYGGEDGSANVHLPCGGSLEVLVERLEP
TTENLTHLEVIHATLLGRQPLTRCIKLDGSGKRFTPPNSSEPAVTFNMAS
VNIRIGPALRLIIAGISSISSPCALFAHSLGFEVIVCDPRSEARKNFSVP
GVEMQAVLPSVFISSGGCHANTAIVALTHDPRIDDLAMMEAVRTDAFYIG
VMGSHQTSQQRAERLLRSGDLTQQQVERIVMPIGLSLGSKTPAEIALAVM
ADIMRIYRGKARNEL*
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mRNA from alignment at E-siliculosus-1a_F_contig11143:3..1380+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11143.770.1 ID=mRNA_E-siliculosus-1a_F_contig11143.770.1|Name=mRNA_E-siliculosus-1a_F_contig11143.770.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1378bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11143:3..1380+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTATCGAAGAAGACTTTATCGCACGGCTCCACAGCGGTGAGTTCGGCGA
ACCAGTGGAACGGGTAAGTTATGGCGGCGAAGATGGCTCAGCGAATGTTC
ATTTACCCTGCGGCGGCAGCCTTGAGGTGTTGGTTGAGCGGCTTGAGCCA
ACCACCGAGAACCTCACTCACCTAGAAGTGATACATGCCACGCTACTTGG
TCGCCAACCGCTAACCCGCTGTATCAAATTGGATGGCAGCGGCAAACGTT
TTACCCCCCCGAATAGCTCCGAGCCCGCCGTTACTTTCAATATGGCTAGT
GTCAATATCCGCATTGGGCCAGCGCTACGGTTGATTATCGCGGGGATCTC
TTCGATTTCTTCGCCCTGTGCTCTGTTTGCTCACTCACTAGGCTTTGAGG
TGATCGTTTGCGATCCTAGAAGCGAGGCCCGGAAGAACTTCAGCGTGCCT
GGCGTAGAAATGCAGGCAGTGTTGCCTTCGGTGTTTATCTCATCCGGCGG
TTGTCATGCCAATACCGCCATTGTTGCTTTGACCCATGATCCGCGTATTG
ACGATTTAGCCATGATGGAAGCTGTCCGCACTGACGCCTTTTACATTGGG
GTCATGGGTTCTCATCAGACGTCGCAACAACGTGCCGAGCGGCTATTGCG
TTCTGGTGATCTAACGCAACAACAAGTGGAGCGCATTGTCATGCCTATTG
GCCTTAGCCTAGGCAGCAAAACACCCGCAGAGATTGCGCTAGCGGTCATG
GCCGACATTATGCGCATCTATCGAGGCAAAGCGCGCAATGAGCTGTAGCG
ACATTATTGTATTAGTCATGGCAGCAGGCCAGTCGAGGCGCTTTGGTAGC
GATAAAAGAGTGGCTAAACTGGCAAATGGAAGACCATTACTTGCTACCAC
TTTAAAGACGATAGAAAAAAGCTTTACCCATAGTCGTGTTGTGCTTAAAC
CTGATGAAAGCGCCCTCTCGGTTGGGTTACCCCCATCAACACCTTCTATG
ATTAGCCACCGCAGTGCGCTAGGCCTTGGGTACAGTATTAGCGATGCATT
CGCACAACTATGCAGAGACGAAAGCACAACGAAATATCGTGCTGCTGCTA
TATGGCTTGCTGACCTTCCGTGGGTAACTCAAAGGTCATGCAAAACGTTA
ATTGACCTTGCTGCGCCGGATAATATCGTACAGCCCCTCTGTGGAGAGTA
CCCAGGTCATCCTGTCATTTTTGGTAGGAATTTTTGGAGCCATCTTGCAG
AGTTAGAGGAATTTGGCGGGGCATCATCTATCATCCGGCAGCATAAAAAC
AGTGTTGTCACTGTTTTGTTAAACGACCCTGGGATACACACTGACATCGA
CTACCCCAACGATCTATTTAAATTGCCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11143:3..1380+

>mRNA_E-siliculosus-1a_F_contig11143.770.1 ID=mRNA_E-siliculosus-1a_F_contig11143.770.1|Name=mRNA_E-siliculosus-1a_F_contig11143.770.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1596bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11143:3..1380+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTATCGAAGAAGACTTTATCGCACGGCTCCACAGCGGTGAGTTCGGCGA
ACCAGTGGAACGGGTAAGTTATGGCGGCGAAGATGGCTCAGCGAATGTTC
ATTTACCCTGCGGCGGCAGCCTTGAGGTGTTGGTTGAGCGGCTTGAGCCA
ACCACCGAGAACCTCACTCACCTAGAAGTGATACATGCCACGCTACTTGG
TCGCCAACCGCTAACCCGCTGTATCAAATTGGATGGCAGCGGCAAACGTT
TTACCCCCCCGAATAGCTCCGAGCCCGCCGTTACTTTCAATATGGCTAGT
GTCAATATCCGCATTGGGCCAGCGCTACGGTTGATTATCGCGGGGATCTC
TTCGATTTCTTCGCCCTGTGCTCTGTTTGCTCACTCACTAGGCTTTGAGG
TGATCGTTTGCGATCCTAGAAGCGAGGCCCGGAAGAACTTCAGCGTGCCT
GGCGTAGAAATGCAGGCAGTGTTGCCTTCGGTGTTTATCTCATCCGGCGG
TTGTCATGCCAATACCGCCATTGTTGCTTTGACCCATGATCCGCGTATTG
ACGATTTAGCCATGATGGAAGCTGTCCGCACTGACGCCTTTTACATTGGG
GTCATGGGTTCTCATCAGACGTCGCAACAACGTGCCGAGCGGCTATTGCG
TTCTGGTGATCTAACGCAACAACAAGTGGAGCGCATTGTCATGCCTATTG
GCCTTAGCCTAGGCAGCAAAACACCCGCAGAGATTGCGCTAGCGGTCATG
GCCGACATTATGCGCATCTATCGAGGCAAAGCGCGCAATGAGCTGTAGTG
TATCGAAGAAGACTTTATCGCACGGCTCCACAGCGGTGAGTTCGGCGAAC
CAGTGGAACGGGTAAGTTATGGCGGCGAAGATGGCTCAGCGAATGTTCAT
TTACCCTGCGGCGGCAGCCTTGAGGTGTTGGTTGAGCGGCTTGAGCCAAC
CACCGAGAACCTCACTCACCTAGAAGTGATACATGCCACGCTACTTGGTC
GCCAACCGCTAACCCGCTGTATCAAATTGGATGGCAGCGGCAAACGTTTT
ACCCCCCCGAATAGCTCCGAGCCCGCCGTTACTTTCAATATGGCTAGTGT
CAATATCCGCATTGGGCCAGCGCTACGGTTGATTATCGCGGGGATCTCTT
CGATTTCTTCGCCCTGTGCTCTGTTTGCTCACTCACTAGGCTTTGAGGTG
ATCGTTTGCGATCCTAGAAGCGAGGCCCGGAAGAACTTCAGCGTGCCTGG
CGTAGAAATGCAGGCAGTGTTGCCTTCGGTGTTTATCTCATCCGGCGGTT
GTCATGCCAATACCGCCATTGTTGCTTTGACCCATGATCCGCGTATTGAC
GATTTAGCCATGATGGAAGCTGTCCGCACTGACGCCTTTTACATTGGGGT
CATGGGTTCTCATCAGACGTCGCAACAACGTGCCGAGCGGCTATTGCGTT
CTGGTGATCTAACGCAACAACAAGTGGAGCGCATTGTCATGCCTATTGGC
CTTAGCCTAGGCAGCAAAACACCCGCAGAGATTGCGCTAGCGGTCATGGC
CGACATTATGCGCATCTATCGAGGCAAAGCGCGCAATGAGCTGTAG
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