mRNA_E-siliculosus-1a_F_contig1113.764.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1113.764.1 vs. uniprot
Match: A0A6H5JUH3_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH3_9PHAE) HSP 1 Score: 1191 bits (3081), Expect = 0.000e+0 Identity = 737/861 (85.60%), Postives = 753/861 (87.46%), Query Frame = 2 Query: 26 MQAPFDEEGNGAPSNDTDVLQESPAAPGEHAQDGSGGLLEATFEERFEQFYLQLAEGKTGGMVACVDEMQRIVDSTRQRQQQLDPVKHPSAAAQPQASPPSSTSPSAAVYDEMLQDCRRKAGEVTLDRLRKLCQKLSRPNANRDDDGGRMGGDGGTALGEEETVVVSYHAALLGKAEGAANIYGGFLRNRLKQANDAAVKKLSSLRPLYRLSLASGXXXXXXXXXXXXXXXXXXXXXXXXXXXADPHPHITALATILGEGSKLMVRLAESSLGDGVMEPVAELLHKDSKTQAVKILEWFQHDADLPKWQAQVSGRTAGQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX----EGLFDARGMDFVIDEMALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFFGGLATEADHRVPVGGGEGGEGDGEKGSDQQPDDFSTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------VEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLVSLMLDEVARILRSYKDLRDSRLNDVLEALSPPVSSALANAFGSSSYALGPAQYEFRSGDLPGARRVLHAATRAMTGNNSSGESGGXXXXXXXADADGGCRAALLQEPFEELVRRLASRVASGVEMAARAKGHXXXXXXXXXXXXXXGFTEWGALLLRKEVRTLQQGLAALMETDSLNMEFGDLNELVRLLNFERPADALDYRPPPAPRRPGDNGSAGVNGGGGGRIGDGGNASVSSEKVKEVLRLRADFQREAIDALEL 2578 MQAPFD EGNG+PS+DTDVLQE+PAAPG HAQDGSGGLLEATFEERFEQFYLQLAEGKTGGMVACVDEMQRIVDSTRQR+QQLDPVK PSAAA PQ SPSAAVYDEMLQDCRRKAGEVTLDRLRKLCQKLSRP+ANR DDGGRMGGDGGTALGEEETVVVSYHAALLGKAEGAANIYGGFLRNRLKQANDAAVKKLSSLRPLYRLSLASGXXXXXXXXXXXXXXXXXXXXXXXXXX ADPHPHITALAT+LGEGSKLMVRLAESSLGDGVMEPVAELLHKDSKTQAVKILEWFQHDADLPKWQAQVSGRTA +RAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX EGLFDARGMDFVIDEMALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRL EGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSF+GGLATEADHRVPVGGGEGG GDGEKGSDQQP+DFSTAL VEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLV LMLDEVARILRSYK+LRDSRLNDVLEALSPPVSSA+ANAFGSSSYALGPAQYE RSGDLPGARRVLHAATRAMTG++SSG XXXXXXX XXXXXXXXXXXXXXGFTEWGALLLRKEVRTLQQGLAALMETDSL+ EFGDLNELVRLLNFERPADALDYRPPPAPRRPGDNGSAGVNGGGGGRIGDGGNASVSSE+VKEVLRLRA+FQREAIDALEL Sbjct: 1 MQAPFDAEGNGSPSDDTDVLQENPAAPGAHAQDGSGGLLEATFEERFEQFYLQLAEGKTGGMVACVDEMQRIVDSTRQREQQLDPVKPPSAAAPPQGXXXXXXSPSAAVYDEMLQDCRRKAGEVTLDRLRKLCQKLSRPDANRHDDGGRMGGDGGTALGEEETVVVSYHAALLGKAEGAANIYGGFLRNRLKQANDAAVKKLSSLRPLYRLSLASGXXXXXXXXXXXXXXXXXXXXXXXXXX-ADPHPHITALATVLGEGSKLMVRLAESSLGDGVMEPVAELLHKDSKTQAVKILEWFQHDADLPKWQAQVSGRTAVERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLFDARGMDFVIDEMALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLTEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFYGGLATEADHRVPVGGGEGGRGDGEKGSDQQPNDFSTALAKWDCGGWALEEAADEHSGPRGEGSGNGGAAGIWAGEGFGEVEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLVGLMLDEVARILRSYKELRDSRLNDVLEALSPPVSSAIANAFGSSSYALGPAQYELRSGDLPGARRVLHAATRAMTGSDSSGXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFTEWGALLLRKEVRTLQQGLAALMETDSLSTEFGDLNELVRLLNFERPADALDYRPPPAPRRPGDNGSAGVNGGGGGRIGDGGNASVSSERVKEVLRLRAEFQREAIDALEL 855
BLAST of mRNA_E-siliculosus-1a_F_contig1113.764.1 vs. uniprot
Match: D8LT95_ECTSI (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT95_ECTSI) HSP 1 Score: 716 bits (1847), Expect = 2.430e-248 Identity = 452/486 (93.00%), Postives = 458/486 (94.24%), Query Frame = 2 Query: 1121 MALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFFGGLATEADHRVPVGGGEGGEGDGEKGSDQQPDDFSTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLVSLMLDEVARILRSYKDLRDSRLNDVLEALSPPVSSALANAFGSSSYALGPAQYEFRSGDLPGARRVLHAATRAMTGNNSSGESGGXXXXXXXADADGGCRAALLQEPFEELVRRLASRVASGVEMAARAKGHXXXXXXXXXXXXXXGFTEWGALLLRKEVRTLQQGLAALMETDSLNMEFGDLNELVRLLNFERPADALDYRPPPAPRRPGDNGSAGVNGGGGGRIGDGGNASVSSEKVKEVLRLRADFQREAIDALEL 2578 MALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFFGGLATEADHRVPVGGGEG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLV LMLDEVARILRSYKDLRDSRLNDVLEALSPPVSSALANAFGSSSYALGPAQYE RSGDLPGARRVLHAATRAMTG+++SGESGGXXXXXXX ADGGCRAALLQEPFEELVRRLASRVA+GVEMAARAKGH XXXXXXXXXXXXX FTEWGALLLRKEVRTLQQGLAALMETDSLNMEFGDLNELVRLLNFERPADALDYRPPPAPRRP D+GSAGVNGGGGGRIGDG NASVSSE+VKEVLRLRADFQREAIDALEL Sbjct: 1 MALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFFGGLATEADHRVPVGGGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLVGLMLDEVARILRSYKDLRDSRLNDVLEALSPPVSSALANAFGSSSYALGPAQYELRSGDLPGARRVLHAATRAMTGSDNSGESGGXXXXXXXX-ADGGCRAALLQEPFEELVRRLASRVAAGVEMAARAKGHGXXXXXXXXXXXXX-FTEWGALLLRKEVRTLQQGLAALMETDSLNMEFGDLNELVRLLNFERPADALDYRPPPAPRRPRDDGSAGVNGGGGGRIGDGENASVSSERVKEVLRLRADFQREAIDALEL 484
BLAST of mRNA_E-siliculosus-1a_F_contig1113.764.1 vs. uniprot
Match: A0A7S3XW30_HETAK (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW30_HETAK) HSP 1 Score: 159 bits (402), Expect = 1.810e-38 Identity = 125/411 (30.41%), Postives = 184/411 (44.77%), Query Frame = 2 Query: 845 DGVMEPVAELLHKDSKTQAVKILEWFQHDA---DLPKWQAQVSGRTAGQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLFDARGMDFVIDEMALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPE------PSFFGGLATEADHR----------VPVGGGEGGEGDGEKGSDQQP--DDFSTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLVSLMLDEVARILRSYKDLRDSRLNDVLEALSPPVSSALANAFGSSSYALGPAQYEFRSGDLPGARRVLHAAT 2014 D V A LHK +++L+W+ DA W A+ G+ G + D +D V DE++ CQ RYL FV +G D+ E Y +++ + G ++ +ED YC +V A+ ++EPIEVQ G Y S++VEDA FLV KSL R++ST S+QA MAV NR+ E+LDP PSF+ L D R GEGG G G++ P D + AL V+ INS HVA+SS++A++D ++ +L+A +PLV MLD+ RI+ Y+ L D + + A +++A+A A G Y + +YE RS G +R+ A T Sbjct: 43 DWVSSEGALALHKLGADAVLEMLQWYDEDARPGQWADWGARSKGKNTGGKQVGP------------------------------DPAQLDVVADELSYLCQLVTRYLSFVCMTIG--HDEQGELYGKLQQLIGTFISVEDLYCQLNVRRAIELSEPIEVQPGVYCSTLVEDAFFLVKKSLERTLSTCSDQATMAVSNRLAELLDPQQAAAGGEGAPSFYAALRAMGDVRPQEVLAEKRAAAAAQGEGGAGK-VPGAEAPPAPPDLAQALLAAAIEEEESKALR---------------------VDSIAFQINSAHVAISSITAMRDMMSEYLDAESPLVQTMLDDFRRIMEPYQALVDGLVGRLAAAAGDALAAAVAAALGGR-YDIEMEEYERRSSSGEGEKRLAAAVT 398
BLAST of mRNA_E-siliculosus-1a_F_contig1113.764.1 vs. uniprot
Match: A0A836CHF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF9_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.680e-37 Identity = 246/825 (29.82%), Postives = 332/825 (40.24%), Query Frame = 2 Query: 350 VYDEMLQDCRRKA----------GEVTLDRLRKLCQKLSRPNANRDDDGGRMGGDGGTALGEEETVVVSYHAAL-LGKAEGAANIYGGFLRNRLKQANDAAVKKLSSLRPLYRLSLASGXXXXXXXXXXXXXXXXXXXXXXXXXXXADPHPHITALATILGEGSKLMVRLAESSLGDGVMEPVAEL------------------------LHKDSKTQAVKILEWFQHDADLPKWQAQVSGRTAGQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLFDARGMDFVIDEMALACQYCHRYLDFVADDL--------------------------GLPEDQSSE--FYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFFGGLATEADHRVPVGGGEGGEGDGEKGSDQQPDDFSTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLVSLMLDEVARIL----------------------RSYKDLRDSRLNDVL-EALSPPVSSALANAFGSSSYALGPAQYEFRSGDLPGARRVLHAATRAMTGNNSSGESGGXXXXXXXADADGGCRAALLQEPFEELVRRLASRVASGVEMAARAKGHXXXXXXXXXXXXXXGFTEWGALLLRKEVRTLQQGLAALMETDSLNMEFGDLNELVRLLNFERPADALDYRPPPAPRRPGDNGSAGVNGGGGGRIGDGGNASVSSEKVKEVLRLRADFQREAID 2566 VY EML CR K GE ++ LR+ C+ +E + + H A+ LG+ + AANI+GG+LR+R K D A+K+LS+ R LYRLS D HPH+TA+A +LG + + RL + L LH ++ A L WF+ DA L +W + Q A XXXXXXXXXXXXXXX XXXX D + MDF+IDE+A ACQ RYLDF A + G E + E ++V+ + GAYVQLEDAYCL SV +A+RIAEPIEV G +VSS +S +++ E+A+ +EAD +P XXXXXXXXXX XXXXXXXXXX +V NS H A S +A++ A+ L PLV ++++VA R+Y+ LRD L +L EA PP++ L A A Y+ D G + A A ++ + G CRA L F L + A+R+ + VE A XXX TEWGALLL++EVR LQQ L AL+E +L +F L ++V+LL ERPADA ++G A++ ++ + VLRLR DF AI+ Sbjct: 10 VYAEMLDACRAKVPPPTAELTTGGEAAVEALRQQCKAAREAMVQXXX---XXXXXXXXXXXXDEMLDATCHLAVCLGREKQAANIFGGYLRSRAKGVADRALKRLSAQRALYRLSQVR------------------CIQACTEADAEDAHPHVTAVAAVLGTAAAQLARLRGAGLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLHGEACAAATSALTWFEADAGLARWLERA------QTAVQANMQXXXXXXXXXXXXXXXRSPAXXXXXPPLDPKTMDFLIDELAFACQLGQRYLDFAAQEGVSCCEGGPNPSARASPPRAARSPRKGGDEEGEGGEGGLLSRVQALVGAYVQLEDAYCLLSVHKALRIAEPIEVTAGVFVSSARPPSSHDRASDFSAALARALEEAVEV-----------------------SEADAALPX-----------------------XXXXXXXXXXXXEYDRLVAGVLRPRGXXXXXXXXXXRARDLVVMANSAHFAAHSAAAVRAAIAGRLREGAPLVVALMEQVAAAQVCXXXXXXXXXXXXXXXXXXXQRAYEQLRDEHLACLLREAAYPPLAEVLRRG------ACARACYDI---DADGYEAAVAAGAPAAAALATAADEG---------PLGAACRAGLDSGVFALLAQAAAARLCADVEAAVLGXXXXXXV------------TEWGALLLQREVRVLQQRLGALVEGGTLTAQFSRLQQVVQLLTLERPADAPLLH----------------------KVG----ATLPTDVARAVLRLRQDFDPAAIE 705
BLAST of mRNA_E-siliculosus-1a_F_contig1113.764.1 vs. uniprot
Match: W7TYV3_9STRA (Conserved oligomeric Golgi complex subunit 4 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYV3_9STRA) HSP 1 Score: 156 bits (395), Expect = 1.380e-35 Identity = 170/729 (23.32%), Postives = 278/729 (38.13%), Query Frame = 2 Query: 350 VYDEMLQDCRRKAGEVTLDRLRKLCQKLSRPNANRDDDGGRMGGDGGTALGEEETVVVSY--HAALLGKAEGAANIYGGFLRNRLKQANDAAVKKLSSLRPLYRLSLASGXXXXXXXXXXXXXXXXXXXXXXXXXXXADPHPHITALATILGEGSKLMVRLA--------ESS-------------------LGDGVMEPVAELLHKDSKTQAVKILEWFQHDADLPKWQAQVSGRTAGQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLFDARGMDFVIDEMALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFFGGLATEADHR----VPVGGGEGGEGDGEKGSDQQPDDFSTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAMVGINSVHVALSSVSAIQDAL-------------NRFLEASNPLVSLMLDEVARILRSYKDLRDSRLNDVLEA-LSPPVSSALANAFGSSSYALGPAQYEFRSGDLPGARRVLHAATRAMTGNNSSGESGGXXXXXXXADADGGCRAALLQEPFEELVRRLASRVASGVEMAARAKGHXXXXXXXXXXXXXXGFTEWGALLLRKEVRTLQQGLAALMETD-SLNMEFGDLNELVRLLNFERPAD 2392 V EML+DC RK G+V L+ LRK +A+ + ++ L + AANIYGGFL+ RL ++ + A++ L S+R L RL + S D PH+T L+ +LGE S+++ L ESS L + + L+ ++ QA+K+L+W+ D + +WQ + + + +DF +DE+ L +RYL FVA P ++ + + QV+ + G YV +E AYC +V +A+ +P EVQ+G VS++VED ++++S+ R+ T S+QAI+AV +R TE+L P + PSF L + R V GGG D FS AL E + INS+ A++++ +QD L + +V + E R+L+ Y + L+D +S + L+ G ++Y + YE + G + C+A + V R+A ++ + A K FTEWG + LR++VR LQ+ L L++ +L +F ++++V LLN + PAD Sbjct: 122 VQQEMLEDCERKTGDVVLNLLRKAT----------------------SAIAPDPAAAPAWFLECVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNSQADDSEGVGQ----------------DSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSARGTEDLV---------------------------------VQELDFALDELQLVLGLSNRYLAFVA----APREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSV-PSFAAALQALVEDRSLTGVEAGGGA-------------MDQFSRALQQQLDEEEGNVTH-----------------------EAMIYAINSMDCAVAAMKKMQDMLLELGVRGSCEGESQQRARGGPHMVEAVAQEFGRVLKQYGGYLEVLLDDFASRYVSSGILDYLSQVVGRTNYTIDATTYE-----------------KEAAGRGDPFVTQFLDYMFVKDKVLRDCKAGMTGSALLGFVERVAMSLSPALIQALEEKE----------------FTEWGGMKLRQQVRLLQEQLMELVDGHGTLLPQFARVDQMVTLLNLDSPAD 705
BLAST of mRNA_E-siliculosus-1a_F_contig1113.764.1 vs. uniprot
Match: W7TI94_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TI94_9STRA) HSP 1 Score: 140 bits (352), Expect = 9.930e-31 Identity = 114/424 (26.89%), Postives = 181/424 (42.69%), Query Frame = 2 Query: 350 VYDEMLQDCRRKAGEVTLDRLRKLCQKLSRPNANRDDDGGRMGGDGGTALGEEETVVVSY--HAALLGKAEGAANIYGGFLRNRLKQANDAAVKKLSSLRPLYRLSLASGXXXXXXXXXXXXXXXXXXXXXXXXXXXADPHPHITALATILGEGSKLMVRLA--------ESS-------------------LGDGVMEPVAELLHKDSKTQAVKILEWFQHDADLPKWQAQVSGRTAGQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLFDARGMDFVIDEMALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFFGGLATEADHR----VPVGGG 1522 V EML+DC RK G+V L+ LRK +A+ + ++ L + AANIYGGFL+ RL ++ + A++ L S+R L RL + S D PH+T L+ +LGE S+++ L ESS L + + L+ ++ QA+K+L+W+ D + +WQ + + + +DF +DE+ L +RYL FVA P ++ + + QV+ + G YV +E AYC +V +A+ +P EVQ+G VS++VED ++++S+ R+ T S+QAI+AV +R TE+L P + PSF L + R V GGG Sbjct: 122 VQQEMLEDCERKTGDVVLNLLRKAT----------------------SAIAPDPAAAPAWFLECVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNSQADDSEGVGQ----------------DSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSARGTEDLV---------------------------------VQELDFALDELQLVLGLSNRYLAFVA----APREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSV-PSFAAALQALVEDRSLTGVEAGGG 469
BLAST of mRNA_E-siliculosus-1a_F_contig1113.764.1 vs. uniprot
Match: A0A2D4BSK3_PYTIN (UMP-CMP kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSK3_PYTIN) HSP 1 Score: 81.3 bits (199), Expect = 7.180e-12 Identity = 147/643 (22.86%), Postives = 237/643 (36.86%), Query Frame = 2 Query: 770 HITALATILGEGSKLMVRLAESSLGDGVMEPVAELLHKDSKTQAVKILEWFQHDADLPKWQAQVSGRTAGQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLFDARGMDFVIDEMALACQYCHRYLDFV-ADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDP-------HAPEPSFFGG-LATEADHRVPVGGGEGGEGDGEKGSDQQPD-DFSTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLVSLMLDEVARILRSYKD---------LRDSRLNDVLEALSPPVSSALANAFGSSSYALGPAQYEFRSGDLPGARR-VLHAATRAMTGNNSSGESGGXXXXXXXADADGGCRAALLQEPFEELVRRLASRVASGVEMA-ARAKGHXXXXXXXXXXXXXXGFTEWGALLLRKEVRTLQQGLAALMETDSLNMEFGDLNELVRLLNFERPADALDYRPPPAPRRPGDNGSAGVNGGGGGRIGDGGNASVSSEKVKEVLRLRADFQREAID-ALEL*HDNVARRANAELRGHYR 2632 ++ AL+ +L + LM +A+ + V++ V LH S A++++ + DA + W+ R A +A E + +D +DE+A + Y FV A L S F + + + G Y+ LE Y +SV +A IAE E++ G YVSSMVED SF++HK++ R+ + + ++V + + + L+ + P +F L E D V G D GS D FS L X ++ INS ++ V+ ++ + +A+ P + +L+ + + LR +D +++ + L P V +A + L PAQY D G + LH + N AAL PFEELV L S + +E A R++ F + GAL L +E+ Q +A L SL F L + LLN +P D +DY D A + +++ LRLR DF A+ A++ D +A + NA H R Sbjct: 349 YVEALSEVLTGATDLMNAVADVTTDATVLQRVLSPLHDTSAAVALELVALYAEDARMAAWE-----RRAIDQARRLPDDPDATAV-----------------EADESLQMIDLFLDELAFVLRLLSSYSAFVRALCSALDCGGRSAFARKAQELNGVYLLLERFYVFQSVHKATEIAEVQELERGVYVSSMVEDVSFVLHKAVFRASQSMNYHTALSVVSAIVDALESTYLDAIVNLPXRAFVVPVLDLENDVSSSVDGSNSLSDDSXDGSATATDVSFSDLLLQAVDEDLTRSAQDXAKL---------------------ILAINSAFLSGEFVATLEAKIQELADATFPDDAPLLECLPKPLRELRDTFRGIVAHEIQEVLTRGIRRTLEPRVHRVVAERL---QFTLTPAQY-----DACGVQSSALHRLLESDVXRNPLLRR---------------YEAALCAAPFEELVVSLVSDLTQWLESALVRSR---------------KPFNDLGALQLERELSATLQRVAELAPNASLRGTFTRLFHVALLLNLLQPEDVVDYA-------------------------DTLTADLRVSEIEAFLRLRVDFDPSAVARAMQRLQDALAGKENATDADHDR 885
BLAST of mRNA_E-siliculosus-1a_F_contig1113.764.1 vs. uniprot
Match: A0A6A3UDT7_9STRA (Conserved oligomeric Golgi complex subunit 4 n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UDT7_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 7.620e-12 Identity = 152/699 (21.75%), Postives = 261/699 (37.34%), Query Frame = 2 Query: 344 AAVYDEMLQDCRRKAGEVTLDRLRKLCQKLSRPNANRDDDGGRMGGDGGTALGEEETVVVSYHAALLGKAEGAANIYGGFLRNRLKQANDAAVKKLSSLRPLYRLSLASGXXXXXXXXXXXXXXXXXXXXXXXXXXXADPHPHITALATILGEGSKLMVRLAESSLGDGVMEPVAELLHKDSKTQAVKILEWFQHDADLPKWQAQVSGRTAGQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLFDARGMDFVIDEMALACQYCHRYLDFVA---DDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDP-HAPEPSFFGGLATEADHRVPVGGGEGGEGDGEKGSDQQPDDFSTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLVSLMLDEVARILRSYKDLRDSRL-NDVLEALSPPVSSALANAFGSS-----SYALGPAQYEFRSGDLPGARR--VLHAATRAMTGNNSSGESGGXXXXXXXADADGGCRAALLQEPFEELVRRLASRVASGVEMAARAKGHXXXXXXXXXXXXXXGFTEWGALLLRKEVRTLQQGLAALMETDSLNMEFGDLNELVRLLNFERPADALDY 2404 AAV DEML+ C KA + L KL Q + GT + + + A LG A AA +GG L + A+++++ + +++ D ++ AL+ +L + +M +A+ + V++ V E +H A++++E + DA + W+ + + + QR E + +D +DE+A + Y F+A D LG E + F +V+ + G YV LE Y +SV +A IAEP E+++G YVSS+VED SF+++K+ R+ + +++ + + L+ + P E V G G+ D+ S L XXXXX ++ INS ++ V A+Q+ ++ + A P + +L+ + + + S + N+V E LS + L Y L A+Y D+ G++ +L + + N AL PFE+LV + + SGVE A A + GAL L +EV + ++ L+ SL F L ++V +LN +P+ LDY Sbjct: 44 AAVRDEMLRSCEAKAQSLQEPSLAKLQQACA-----------------GTDVDVDAALSAFARCAALGVARAAAPRFGGCLSRIFAKQARASLERVRGSKQAAKVN---------------------------EHGYIDRAFYVEALSELLTGATDIMNAVADVTADAQVLQQVLEPIHASCAEMALQMVEMYAGDARMVAWERRANAQA--QR-------------------DPRQTLEGEDVEADESLQMIDLFLDELAFIIRVLVSYTAFLATVCDGLGQGEGGAG-FQVKVQELTGVYVVLERFYVFQSVHKATAIAEPQELEEGVYVSSVVEDVSFVLNKAFFRASQCMNYHTALSIVIALVDALESQYLPAILALPSRPCEIPLSVANAASAGSSGN---------DNGSARLDGXXXXXNEVSFSDMLLQAVDDDLQRTLQEEARL-----IMTINSAFMSGEFVRALQEKIDDYSRAGFPSDAPILECLPTPIHDMTEAFHSIVSNEVQEVLSRSLRKRLLEVIQRQMEEQLKYVLTSAEY-----DVLGSQGSPLLRLVEQEVLKNRELQRY----------------ERALCSTPFEDLVEAVTQDLTSGVERALLATRKHC--------------NDLGALQLEREVTDMLARVSTLVPQKSLRAAFTRLFQVVFILNLMQPSHVLDY 627
BLAST of mRNA_E-siliculosus-1a_F_contig1113.764.1 vs. uniprot
Match: A0A7S2NVR4_9STRA (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVR4_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.560e-11 Identity = 42/124 (33.87%), Postives = 68/124 (54.84%), Query Frame = 2 Query: 1082 LFDARGMDFVIDEMALACQYCHRYLDFVADDLGLPEDQSSE-----FYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTE 1438 L D G+D V++E+A CQ RY F+ L S+ + ++ G Y LED S++ A+ IA P+E+ DG +V S+VEDA F+ +++ R+ ST + QA++ + NR+ E Sbjct: 341 LIDVTGLDVVLEELAFLCQVSARYCQFIDSTLEFMSASSTSSSDRPLWLLLQEHSGQYATLEDCLSKSSLDRAIDIAAPVEIMDGVFVPSVVEDAFFVSRRAVERASSTFNSQALITLANRIAE 464
BLAST of mRNA_E-siliculosus-1a_F_contig1113.764.1 vs. uniprot
Match: A0A662WN92_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WN92_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 2.650e-10 Identity = 120/556 (21.58%), Postives = 208/556 (37.41%), Query Frame = 2 Query: 770 HITALATILGEGSKLMVRLAESSLGDGVMEPVAELLHKDSKTQAVKILEWFQHDADLPKWQAQVSGRTAGQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLFDARGMDFVIDEMALACQYCHRYLDF---VADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQ--AIMAVCNRVTEILDPHAPEPSFFGGLATEADHRVPVGGGEGGEGDGEKGSDQQPDDFSTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLVSLMLDEVARILRSYKD-LRDSRLNDVLEALSPPVSSALANAFGSS-----SYALGPAQYEFRSGDLPGARRVLHAATRAMTGNNSSGESGGXXXXXXXADADGGCRAALLQEPFEELVRRLASRVASGVEMAARAKGHXXXXXXXXXXXXXXGFTEWGALLLRKEVRTLQQGLAALMETDSLNMEFGDLNELVRLLNFERPADALDY 2404 ++ AL+ +L + +M +A+ + V+ PV +H + ++I+ + DA + W+ + + + QR + E + MD +DE+A + Y F V D L +D+S F +V+ G Y+ LE Y +SV +A IAEP E+QDG +VSS+VED SF+++K+ R+ S+ AI+A+ +R ++ + + S G R+ D + ++Q FS L ++ INS ++ V ++D + F S P +L+ + + + R N+V E LS + L Y L +QY+ +R+L + + N AL PFE+L+ + + S +E A A + GAL L +EV + ++ L+ SL F L ++V +LN +P LDY Sbjct: 142 YVEALSELLTGATDIMNAVADVTADPEVLRPVLGPIHASCASITLEIVHMYAGDARMTAWERRANAQA--QRGSTEDV------------------------EADESLQMMDLFLDELAFIIRVLVSYTAFLTTVCDGLET-QDESGGFQIKVQEFSGVYLVLERFYVFQSVHKAAAIAEPQELQDGVFVSSIVEDVSFVLNKAFFRASQWCSQYLPAILALPSRPC-VIPLSSIDASTSNGKDGMGSSRL----------DDDPEAEQIEVSFSDMLLQAVDEDLEQSLQEEARL---------------------IMTINSAFMSGEFVRTLEDKIASFSSTSFPTDVPILECLPTPIHDMSEAFRSIVANEVQEVLSRTLRKRLPQVIQRQMAEQFQYVLTASQYDVFGSQGSPLQRLLE---QEVMKNRELRRY----------------ERALCNAPFEDLIEAVVQDLTSWLESALLASRKPC--------------NDLGALQLEREVTDMLARVSTLVPQKSLRAAFTRLFQIVLILNLLQPTHVLDY 605 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1113.764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1113.764.1 >prot_E-siliculosus-1a_F_contig1113.764.1 ID=prot_E-siliculosus-1a_F_contig1113.764.1|Name=mRNA_E-siliculosus-1a_F_contig1113.764.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=852bp MQAPFDEEGNGAPSNDTDVLQESPAAPGEHAQDGSGGLLEATFEERFEQFback to top mRNA from alignment at E-siliculosus-1a_F_contig1113:14160..23070+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1113.764.1 ID=mRNA_E-siliculosus-1a_F_contig1113.764.1|Name=mRNA_E-siliculosus-1a_F_contig1113.764.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8911bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1113:14160..23070+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1113:14160..23070+ >mRNA_E-siliculosus-1a_F_contig1113.764.1 ID=mRNA_E-siliculosus-1a_F_contig1113.764.1|Name=mRNA_E-siliculosus-1a_F_contig1113.764.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5112bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1113:14160..23070+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |