mRNA_E-siliculosus-1a_F_contig11123.760.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11123.760.1
Unique NamemRNA_E-siliculosus-1a_F_contig11123.760.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5JGB2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB2_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 2.770e-82
Identity = 130/142 (91.55%), Postives = 137/142 (96.48%), Query Frame = 1
Query:    1 QQTPVLGVYDAGCKPVAHMEKHLPGVLQNRGRPARLGDDGVGGGGSRHSNAAANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
            QQTPVLG+YDAGCK VAHMEKHLPGVLQNRGRP RLGDDGVGGGGS +SNAA+NDTEDGEPAPTPR+FL ALAHLGSNSASTTV+APQVSLPVPPKRDSKVDVYALKAAAQGDRVQ+QVNVYDL HASAETQGPVP+AVNLA
Sbjct:  247 QQTPVLGMYDAGCKAVAHMEKHLPGVLQNRGRPTRLGDDGVGGGGSGYSNAASNDTEDGEPAPTPRIFLQALAHLGSNSASTTVEAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQNQVNVYDLLHASAETQGPVPEAVNLA 388          
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5KCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW5_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 2.750e-72
Identity = 119/127 (93.70%), Postives = 122/127 (96.06%), Query Frame = 1
Query:   46 VAHMEKHLPGVLQNRGRPARLGDDGVGGGGSRHSNAAANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
            VAHMEKHLPGVLQNRGRP RLGDDGVG GGS +SNAA+NDTEDGEPAPTPRVFLPALAHLGSN ASTTV+APQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDL HASAETQGPVPKAVNLA
Sbjct:   17 VAHMEKHLPGVLQNRGRPTRLGDDGVGAGGSGYSNAASNDTEDGEPAPTPRVFLPALAHLGSNGASTTVEAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLLHASAETQGPVPKAVNLA 143          
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5KIT6_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIT6_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.750e-63
Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 1
Query:    1 QQTPVLGVYDAGCKPVAHMEKHLPGVLQNRGRPARLGDDGVGGGGSRHSNAAANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAA 327
            QQTPVLGVYDAGCK VAHMEKHLPGVLQNRGRP RLGDDGVGGGGS +SNAA+NDTEDGEPAPTP VFLPALAHLGSNSASTTV+APQVSLPVPPKRDSKVDVYALKAA
Sbjct:  149 QQTPVLGVYDAGCKAVAHMEKHLPGVLQNRGRPTRLGDDGVGGGGSGYSNAASNDTEDGEPAPTPCVFLPALAHLGSNSASTTVEAPQVSLPVPPKRDSKVDVYALKAA 257          
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5JN33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN33_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 4.890e-52
Identity = 91/99 (91.92%), Postives = 94/99 (94.95%), Query Frame = 1
Query:  130 GGSRHSNAAANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
            GGS HSNAAANDTEDGEPAPTPRVFLPALAHLGSN+ASTTV+APQV LPVPPKRDSKVD+ ALKAAAQGDRVQSQVNVYDL HASAETQGPVPKA NLA
Sbjct:   35 GGSGHSNAAANDTEDGEPAPTPRVFLPALAHLGSNNASTTVEAPQVFLPVPPKRDSKVDLCALKAAAQGDRVQSQVNVYDLLHASAETQGPVPKAANLA 133          
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.030e-44
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1
Query:  154 AANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
            A+ DTEDGEPAPTPRVF PALAHLGS+S+STTV+APQVS+PVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDL HASAETQGPVPKAVNLA
Sbjct:  388 ASIDTEDGEPAPTPRVFFPALAHLGSHSSSTTVEAPQVSVPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLLHASAETQGPVPKAVNLA 478          
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5KXC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC8_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 9.030e-43
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 1
Query:  142 HSNAAANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
            HSNAA+NDTEDGEPA TPRVF PALAHLGSNSAST+V+APQVS+ VPPKR SKVDVYAL AAAQGDR QSQVNVYDL HAS ETQGPVPKAV LA
Sbjct:   32 HSNAASNDTEDGEPASTPRVFSPALAHLGSNSASTSVEAPQVSIHVPPKRYSKVDVYALNAAAQGDRGQSQVNVYDLLHASDETQGPVPKAVYLA 126          
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5KPP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.140e-31
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 1
Query:  193 PRVFLP-ALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
            P   LP A+    +NSASTTV+APQVSLPV PKRDSKVDVYALKAAAQGDRVQ+QVNVYDL HASAET+GPVPKAVNLA
Sbjct:    2 PSRLLPRAIVCRTNNSASTTVEAPQVSLPVTPKRDSKVDVYALKAAAQGDRVQNQVNVYDLLHASAETRGPVPKAVNLA 80          
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: D8LC86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC86_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.680e-22
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 QQTPVLGVYDAGCKPVAHMEKHLPGVLQNRGRPARLGDDGVGGGGS 138
            QQTPVLGVYDAGCK VAHMEKHLPGVLQNRGRP RLGDDGVGGGGS
Sbjct:    9 QQTPVLGVYDAGCKAVAHMEKHLPGVLQNRGRPTRLGDDGVGGGGS 54          
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5JT09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT09_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.640e-17
Identity = 54/87 (62.07%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  190 TPRVFLPALAHLGS-----NSASTTVDAPQVSLPVP---PKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
            TPR+  P   H  S      SA+T    P      P    +RDSKVDVYALKAAAQGDRVQSQ+NVYDL  ASAETQGPVPKAVNLA
Sbjct:    2 TPRMASPHPHHAPSCRRWHTSAATAQVPPSKHRKFPYLYHQRDSKVDVYALKAAAQGDRVQSQLNVYDLLLASAETQGPVPKAVNLA 88          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JGB2_9PHAE2.770e-8291.55CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KCW5_9PHAE2.750e-7293.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIT6_9PHAE1.750e-6393.58CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JN33_9PHAE4.890e-5291.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGH9_9PHAE1.030e-4491.21CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KXC8_9PHAE9.030e-4386.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPP6_9PHAE5.140e-3181.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC86_ECTSI1.680e-2295.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT09_9PHAE1.640e-1762.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11123contigE-siliculosus-1a_F_contig11123:1662..2087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size426
Model size426
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927618.167057-CDS-E-siliculosus-1a_F_contig11123:1661..20871622927618.167057-CDS-E-siliculosus-1a_F_contig11123:1661..2087Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11123 1662..2087 +
1696318612.300644-CDS-E-siliculosus-1a_F_contig11123:1661..20871696318612.300644-CDS-E-siliculosus-1a_F_contig11123:1661..2087Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11123 1662..2087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11123.760.1prot_E-siliculosus-1a_F_contig11123.760.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11123 1662..2087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11123.760.1

>prot_E-siliculosus-1a_F_contig11123.760.1 ID=prot_E-siliculosus-1a_F_contig11123.760.1|Name=mRNA_E-siliculosus-1a_F_contig11123.760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp
QQTPVLGVYDAGCKPVAHMEKHLPGVLQNRGRPARLGDDGVGGGGSRHSN
AAANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSK
VDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA
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mRNA from alignment at E-siliculosus-1a_F_contig11123:1662..2087+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11123.760.1 ID=mRNA_E-siliculosus-1a_F_contig11123.760.1|Name=mRNA_E-siliculosus-1a_F_contig11123.760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=426bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11123:1662..2087+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCAAACGCCGGTTCTTGGGGTGTACGATGCCGGATGCAAGCCGGTGGC GCACATGGAAAAACACCTCCCGGGGGTCCTTCAAAACCGCGGGAGACCCG CTCGGCTTGGCGACGATGGGGTGGGGGGGGGGGGCAGCCGGCACAGCAAC GCTGCCGCAAATGACACCGAGGATGGCGAACCCGCACCCACACCACGCGT CTTCTTGCCGGCGTTGGCGCACCTCGGCAGCAACAGCGCAAGTACCACCG TCGACGCACCGCAAGTTTCGCTACCTGTACCACCTAAGAGAGACAGCAAA GTCGACGTGTATGCCCTCAAGGCTGCTGCCCAGGGCGATCGTGTGCAGAG CCAAGTAAACGTCTACGACCTTCCGCACGCGTCAGCCGAAACACAGGGGC CAGTACCGAAGGCCGTTAACTTGGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11123:1662..2087+

>mRNA_E-siliculosus-1a_F_contig11123.760.1 ID=mRNA_E-siliculosus-1a_F_contig11123.760.1|Name=mRNA_E-siliculosus-1a_F_contig11123.760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11123:1662..2087+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCAAACGCCGGTTCTTGGGGTGTACGATGCCGGATGCAAGCCGGTGGC
GCACATGGAAAAACACCTCCCGGGGGTCCTTCAAAACCGCGGGAGACCCG
CTCGGCTTGGCGACGATGGGGTGGGGGGGGGGGGCAGCCGGCACAGCAAC
GCTGCCGCAAATGACACCGAGGATGGCGAACCCGCACCCACACCACGCGT
CTTCTTGCCGGCGTTGGCGCACCTCGGCAGCAACAGCGCAAGTACCACCG
TCGACGCACCGCAAGTTTCGCTACCTGTACCACCTAAGAGAGACAGCAAA
GTCGACGTGTATGCCCTCAAGGCTGCTGCCCAGGGCGATCGTGTGCAGAG
CCAAGTAAACGTCTACGACCTTCCGCACGCGTCAGCCGAAACACAGGGGC
CAGTACCGAAGGCCGTTAACTTGGCGCAGCAAACGCCGGTTCTTGGGGTG
TACGATGCCGGATGCAAGCCGGTGGCGCACATGGAAAAACACCTCCCGGG
GGTCCTTCAAAACCGCGGGAGACCCGCTCGGCTTGGCGACGATGGGGTGG
GGGGGGGGGGCAGCCGGCACAGCAACGCTGCCGCAAATGACACCGAGGAT
GGCGAACCCGCACCCACACCACGCGTCTTCTTGCCGGCGTTGGCGCACCT
CGGCAGCAACAGCGCAAGTACCACCGTCGACGCACCGCAAGTTTCGCTAC
CTGTACCACCTAAGAGAGACAGCAAAGTCGACGTGTATGCCCTCAAGGCT
GCTGCCCAGGGCGATCGTGTGCAGAGCCAAGTAAACGTCTACGACCTTCC
GCACGCGTCAGCCGAAACACAGGGGCCAGTACCGAAGGCCGTTAACTTGG
CG
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