mRNA_E-siliculosus-1a_F_contig11123.760.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5JGB2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB2_9PHAE) HSP 1 Score: 259 bits (661), Expect = 2.770e-82 Identity = 130/142 (91.55%), Postives = 137/142 (96.48%), Query Frame = 1
Query: 1 QQTPVLGVYDAGCKPVAHMEKHLPGVLQNRGRPARLGDDGVGGGGSRHSNAAANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
QQTPVLG+YDAGCK VAHMEKHLPGVLQNRGRP RLGDDGVGGGGS +SNAA+NDTEDGEPAPTPR+FL ALAHLGSNSASTTV+APQVSLPVPPKRDSKVDVYALKAAAQGDRVQ+QVNVYDL HASAETQGPVP+AVNLA
Sbjct: 247 QQTPVLGMYDAGCKAVAHMEKHLPGVLQNRGRPTRLGDDGVGGGGSGYSNAASNDTEDGEPAPTPRIFLQALAHLGSNSASTTVEAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQNQVNVYDLLHASAETQGPVPEAVNLA 388
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5KCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW5_9PHAE) HSP 1 Score: 233 bits (594), Expect = 2.750e-72 Identity = 119/127 (93.70%), Postives = 122/127 (96.06%), Query Frame = 1
Query: 46 VAHMEKHLPGVLQNRGRPARLGDDGVGGGGSRHSNAAANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
VAHMEKHLPGVLQNRGRP RLGDDGVG GGS +SNAA+NDTEDGEPAPTPRVFLPALAHLGSN ASTTV+APQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDL HASAETQGPVPKAVNLA
Sbjct: 17 VAHMEKHLPGVLQNRGRPTRLGDDGVGAGGSGYSNAASNDTEDGEPAPTPRVFLPALAHLGSNGASTTVEAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLLHASAETQGPVPKAVNLA 143
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5KIT6_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIT6_9PHAE) HSP 1 Score: 203 bits (517), Expect = 1.750e-63 Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 1
Query: 1 QQTPVLGVYDAGCKPVAHMEKHLPGVLQNRGRPARLGDDGVGGGGSRHSNAAANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAA 327
QQTPVLGVYDAGCK VAHMEKHLPGVLQNRGRP RLGDDGVGGGGS +SNAA+NDTEDGEPAPTP VFLPALAHLGSNSASTTV+APQVSLPVPPKRDSKVDVYALKAA
Sbjct: 149 QQTPVLGVYDAGCKAVAHMEKHLPGVLQNRGRPTRLGDDGVGGGGSGYSNAASNDTEDGEPAPTPCVFLPALAHLGSNSASTTVEAPQVSLPVPPKRDSKVDVYALKAA 257
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5JN33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN33_9PHAE) HSP 1 Score: 176 bits (446), Expect = 4.890e-52 Identity = 91/99 (91.92%), Postives = 94/99 (94.95%), Query Frame = 1
Query: 130 GGSRHSNAAANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
GGS HSNAAANDTEDGEPAPTPRVFLPALAHLGSN+ASTTV+APQV LPVPPKRDSKVD+ ALKAAAQGDRVQSQVNVYDL HASAETQGPVPKA NLA
Sbjct: 35 GGSGHSNAAANDTEDGEPAPTPRVFLPALAHLGSNNASTTVEAPQVFLPVPPKRDSKVDLCALKAAAQGDRVQSQVNVYDLLHASAETQGPVPKAANLA 133
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.030e-44 Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1
Query: 154 AANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
A+ DTEDGEPAPTPRVF PALAHLGS+S+STTV+APQVS+PVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDL HASAETQGPVPKAVNLA
Sbjct: 388 ASIDTEDGEPAPTPRVFFPALAHLGSHSSSTTVEAPQVSVPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLLHASAETQGPVPKAVNLA 478
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5KXC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC8_9PHAE) HSP 1 Score: 156 bits (394), Expect = 9.030e-43 Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 1
Query: 142 HSNAAANDTEDGEPAPTPRVFLPALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
HSNAA+NDTEDGEPA TPRVF PALAHLGSNSAST+V+APQVS+ VPPKR SKVDVYAL AAAQGDR QSQVNVYDL HAS ETQGPVPKAV LA
Sbjct: 32 HSNAASNDTEDGEPASTPRVFSPALAHLGSNSASTSVEAPQVSIHVPPKRYSKVDVYALNAAAQGDRGQSQVNVYDLLHASDETQGPVPKAVYLA 126
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5KPP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP6_9PHAE) HSP 1 Score: 117 bits (294), Expect = 5.140e-31 Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 1
Query: 193 PRVFLP-ALAHLGSNSASTTVDAPQVSLPVPPKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
P LP A+ +NSASTTV+APQVSLPV PKRDSKVDVYALKAAAQGDRVQ+QVNVYDL HASAET+GPVPKAVNLA
Sbjct: 2 PSRLLPRAIVCRTNNSASTTVEAPQVSLPVTPKRDSKVDVYALKAAAQGDRVQNQVNVYDLLHASAETRGPVPKAVNLA 80
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: D8LC86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC86_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 1.680e-22 Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 1
Query: 1 QQTPVLGVYDAGCKPVAHMEKHLPGVLQNRGRPARLGDDGVGGGGS 138
QQTPVLGVYDAGCK VAHMEKHLPGVLQNRGRP RLGDDGVGGGGS
Sbjct: 9 QQTPVLGVYDAGCKAVAHMEKHLPGVLQNRGRPTRLGDDGVGGGGS 54
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Match: A0A6H5JT09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT09_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 1.640e-17 Identity = 54/87 (62.07%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 190 TPRVFLPALAHLGS-----NSASTTVDAPQVSLPVP---PKRDSKVDVYALKAAAQGDRVQSQVNVYDLPHASAETQGPVPKAVNLA 426
TPR+ P H S SA+T P P +RDSKVDVYALKAAAQGDRVQSQ+NVYDL ASAETQGPVPKAVNLA
Sbjct: 2 TPRMASPHPHHAPSCRRWHTSAATAQVPPSKHRKFPYLYHQRDSKVDVYALKAAAQGDRVQSQLNVYDLLLASAETQGPVPKAVNLA 88 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11123.760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11123.760.1 >prot_E-siliculosus-1a_F_contig11123.760.1 ID=prot_E-siliculosus-1a_F_contig11123.760.1|Name=mRNA_E-siliculosus-1a_F_contig11123.760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp QQTPVLGVYDAGCKPVAHMEKHLPGVLQNRGRPARLGDDGVGGGGSRHSNback to top mRNA from alignment at E-siliculosus-1a_F_contig11123:1662..2087+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11123.760.1 ID=mRNA_E-siliculosus-1a_F_contig11123.760.1|Name=mRNA_E-siliculosus-1a_F_contig11123.760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=426bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11123:1662..2087+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11123:1662..2087+ >mRNA_E-siliculosus-1a_F_contig11123.760.1 ID=mRNA_E-siliculosus-1a_F_contig11123.760.1|Name=mRNA_E-siliculosus-1a_F_contig11123.760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11123:1662..2087+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |