mRNA_E-siliculosus-1a_F_contig1112.758.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1112.758.1
Unique NamemRNA_E-siliculosus-1a_F_contig1112.758.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1112.758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1112contigE-siliculosus-1a_F_contig1112:32456..32870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size303
Model size415
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1112.758.1prot_E-siliculosus-1a_F_contig1112.758.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1112 32551..32853 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927617.7838926-UTR-E-siliculosus-1a_F_contig1112:32455..325501622927617.7838926-UTR-E-siliculosus-1a_F_contig1112:32455..32550Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1112 32456..32550 +
1696318612.15975-UTR-E-siliculosus-1a_F_contig1112:32455..325501696318612.15975-UTR-E-siliculosus-1a_F_contig1112:32455..32550Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1112 32456..32550 +
1622927617.8099585-UTR-E-siliculosus-1a_F_contig1112:32853..328701622927617.8099585-UTR-E-siliculosus-1a_F_contig1112:32853..32870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1112 32854..32870 +
1696318612.175565-UTR-E-siliculosus-1a_F_contig1112:32853..328701696318612.175565-UTR-E-siliculosus-1a_F_contig1112:32853..32870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1112 32854..32870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927617.798574-CDS-E-siliculosus-1a_F_contig1112:32550..328531622927617.798574-CDS-E-siliculosus-1a_F_contig1112:32550..32853Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1112 32551..32853 +
1696318612.1676602-CDS-E-siliculosus-1a_F_contig1112:32550..328531696318612.1676602-CDS-E-siliculosus-1a_F_contig1112:32550..32853Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1112 32551..32853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1112.758.1

>prot_E-siliculosus-1a_F_contig1112.758.1 ID=prot_E-siliculosus-1a_F_contig1112.758.1|Name=mRNA_E-siliculosus-1a_F_contig1112.758.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=101bp
MSIIEERRWRYRVLTLRTSYVSPTNHVFKSSQQPGAFFERGGLAVFHRSC
FRSDFICRCHEGKTCLWHGNREEWTCDVSNFWSYPPSSQALLSITSRPCV
*
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mRNA from alignment at E-siliculosus-1a_F_contig1112:32456..32870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1112.758.1 ID=mRNA_E-siliculosus-1a_F_contig1112.758.1|Name=mRNA_E-siliculosus-1a_F_contig1112.758.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=415bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1112:32456..32870+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGAGTCGCTGCTGCTGTCATTTCTTTTCCACAAGCCACAGCCGACTCCG
GAGATATGTTATAATCTGTGCGTTGCTTTTCTCCGCACTGTCGTGATGTC
TATCATAGAGGAAAGACGCTGGCGCTATCGTGTTTTGACTCTACGTACCT
CGTACGTAAGCCCAACAAACCACGTCTTTAAATCAAGCCAACAGCCTGGT
GCCTTTTTTGAGAGAGGTGGGTTGGCTGTTTTCCACAGGAGTTGTTTTCG
ATCTGATTTCATCTGCCGTTGTCATGAGGGAAAAACTTGCCTATGGCACG
GCAACCGAGAGGAATGGACGTGTGACGTCAGTAATTTTTGGAGCTACCCT
CCAAGTTCTCAAGCTTTGTTATCAATTACATCGCGTCCATGTGTGTGACA
TACCTCGGAGCATTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1112:32456..32870+

>mRNA_E-siliculosus-1a_F_contig1112.758.1 ID=mRNA_E-siliculosus-1a_F_contig1112.758.1|Name=mRNA_E-siliculosus-1a_F_contig1112.758.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1112:32456..32870+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTATCATAGAGGAAAGACGCTGGCGCTATCGTGTTTTGACTCTACG
TACCTCGTACGTAAGCCCAACAAACCACGTCTTTAAATCAAGCCAACAGC
CTGGTGCCTTTTTTGAGAGAGGTGGGTTGGCTGTTTTCCACAGGAGTTGT
TTTCGATCTGATTTCATCTGCCGTTGTCATGAGGGAAAAACTTGCCTATG
GCACGGCAACCGAGAGGAATGGACGTGTGACGTCAGTAATTTTTGGAGCT
ACCCTCCAAGTTCTCAAGCTTTGTTATCAATTACATCGCGTCCATGTGTG
TGAATGTCTATCATAGAGGAAAGACGCTGGCGCTATCGTGTTTTGACTCT
ACGTACCTCGTACGTAAGCCCAACAAACCACGTCTTTAAATCAAGCCAAC
AGCCTGGTGCCTTTTTTGAGAGAGGTGGGTTGGCTGTTTTCCACAGGAGT
TGTTTTCGATCTGATTTCATCTGCCGTTGTCATGAGGGAAAAACTTGCCT
ATGGCACGGCAACCGAGAGGAATGGACGTGTGACGTCAGTAATTTTTGGA
GCTACCCTCCAAGTTCTCAAGCTTTGTTATCAATTACATCGCGTCCATGT
GTGTGA
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