mRNA_E-siliculosus-1a_F_contig1111.753.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A6H5KLT5_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLT5_9PHAE) HSP 1 Score: 482 bits (1240), Expect = 1.190e-170 Identity = 256/282 (90.78%), Postives = 258/282 (91.49%), Query Frame = 1 Query: 43 MMALMRLLACLSLCLVAVDGYNARVPTMSGGNGGAQPRGRFIAKAACAAASLTGLVVTAPFIVGSDSADGVAAVAAETARNVAVAPALAEEESGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSATSVPRPAEGDY 849
MMA MR+LA LSLCLV VDGYNA+VPTMSGGNGG QPRGRFIAKAACAAASLTGL V APFIVGSDSADGVAAVAAETARNVAVAPALAEE GSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGD FLDKSGFSPIGR GYGEGAPQGNGPNQ KIQSQGNAYLKGSFPKLSYIKSATSVPRPAEGDY
Sbjct: 1 MMAPMRVLAGLSLCLVIVDGYNAKVPTMSGGNGGTQPRGRFIAKAACAAASLTGLAVAAPFIVGSDSADGVAAVAAETARNVAVAPALAEEALGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSATSVPRPAEGDY 282
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A835YRY8_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRY8_9STRA) HSP 1 Score: 221 bits (564), Expect = 2.170e-68 Identity = 121/203 (59.61%), Postives = 143/203 (70.44%), Query Frame = 1 Query: 256 AAVAAETARNVAVAPALAEEESGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSATSV 825
AAV A VA AP A E K V+F V+L+ + G+FV++V PDWAP GAARF L + FF D RFFRVLKGFVAQFGI+GDP V AK+R + ++DDPVTQSNKRGTVVFAT+G N+RT+QLFINFGD AFLDK GFSPIG YGEGAP+G GP+Q+ IQS+GNAYLK FP LSYI +A +
Sbjct: 54 AAVGAAAGVGVAAAPKGAFAEGDPK---VQFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNAKRI 253
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S2RJE7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJE7_9STRA) HSP 1 Score: 218 bits (555), Expect = 1.750e-66 Identity = 115/190 (60.53%), Postives = 134/190 (70.53%), Query Frame = 1 Query: 295 APALAEEESGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSATSV 825
AP LAE+ + P V F VQLS EE G ++V PDW+P GA RF L +AGF+ DCRFFRVL GFVAQFGINGDPAV +++RG ++DDPVT +N RGT+ FAT G NSRTTQ+FINF D FLD+SGFSP GYGEGAP GNGPNQ IQS+GNAYL S+PKLS+IKSA V
Sbjct: 97 APGLAED--AAAPFDVLFTVQLSPEEEGQVGLKVHPDWSPRGAQRFRELVEAGFYNDCRFFRVLPGFVAQFGINGDPAVMSQWRGRNLRDDPVTVTNSRGTLSFATGGPNSRTTQVFINFKDNKFLDRSGFSPFAEVTSGMDIVEKLYSGYGEGAPNGNGPNQGLIQSKGNAYLSASYPKLSFIKSAKVV 284
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S3YYD7_9EUKA (Peptidylprolyl isomerase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YYD7_9EUKA) HSP 1 Score: 209 bits (533), Expect = 8.850e-63 Identity = 132/262 (50.38%), Postives = 161/262 (61.45%), Query Frame = 1 Query: 136 NGGAQ-----PRGRF-----IAKAACAAASLTGLVVT-----------APFIVGSDSADGVAAVAAETARNVAVAPALAEEESGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR--------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSA 816
NGG Q P GR AKA +AA G V T +P + D A GV A A A AEE SG + V+F+VQL+ +++ FV+EV P+WAPLGA +F L GF+ DCRFFRV++GFV Q+GINGDP V KY+ + QDDPV SNKRGT+ FATSGKNSRTTQLFINFGD FLD+ GFSPIG+ YGEGAP G+GP+Q +IQ GNAYL+ ++PKLSYIK+A
Sbjct: 66 NGGVQGSMAKPAGRISTKISAAKAFASAAKAEGTVATRASKSDKLGGDSPVVSRRDVAVGVPVGAGLAA---VAGKAKAEEGSGGVFN-VEFEVQLTADKTDKFVIEVHPEWAPLGAEQFKKLVTDGFYNDCRFFRVVEGFVVQWGINGDPDVNKKYKKPI-QDDPVKTSNKRGTLTFATSGKNSRTTQLFINFGDNTFLDRLGFSPIGKVAGDGMKVVDSIYDRYGEGAPNGSGPDQGRIQRSGNAYLEKNYPKLSYIKTA 322
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S3YYN4_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YYN4_9EUKA) HSP 1 Score: 204 bits (518), Expect = 1.860e-62 Identity = 102/169 (60.36%), Postives = 125/169 (73.96%), Query Frame = 1 Query: 352 VQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR--------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSA 816
VQL+ +++ FV+EV P+WAPLGA +F L GF+ DCRFFRV++GFV Q+GINGDP V KY+ + QDDPV SNKRGT+ FATSGKNSRTTQLFINFGD FLD+ GFSPIG+ YGEGAP G+GP+Q +IQ GNAYL+ ++PKLSYIK+A
Sbjct: 10 VQLTADKTDKFVIEVHPEWAPLGAEQFKKLVTDGFYNDCRFFRVVEGFVVQWGINGDPDVNKKYKKPI-QDDPVKTSNKRGTLTFATSGKNSRTTQLFINFGDNTFLDRLGFSPIGKVAGDGMKVVDSIYDRYGEGAPNGSGPDQGRIQRSGNAYLEKNYPKLSYIKTA 177
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S2TLE1_9EUKA (Peptidylprolyl isomerase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TLE1_9EUKA) HSP 1 Score: 208 bits (530), Expect = 1.930e-62 Identity = 108/190 (56.84%), Postives = 136/190 (71.58%), Query Frame = 1 Query: 289 AVAPALAEEESGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR--------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSA 816
AVA + EE V+F+VQL+ +++ FV+EV P+WAP GA +F L GF++DCRFFRV++GFV Q+GINGDP V KY+ A+ QDDPV SN+RGT+ FATSGKNSRTTQLFINFGD FLD+ GFSPIG+ YGEGAP G+GP+Q +IQ GNAYL+ ++PKLSYIK+A
Sbjct: 125 AVAGKVKAEEGSGGIFNVEFEVQLTADKTDKFVIEVHPEWAPHGAEQFKKLVNDGFYDDCRFFRVVEGFVVQWGINGDPEVNKKYKKAI-QDDPVKTSNERGTLTFATSGKNSRTTQLFINFGDNTFLDRLGFSPIGKVVGDGMKIVDSIYDRYGEGAPNGSGPDQGRIQRSGNAYLEKNYPKLSYIKTA 313
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S2CBJ7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CBJ7_9STRA) HSP 1 Score: 206 bits (525), Expect = 2.620e-62 Identity = 103/173 (59.54%), Postives = 121/173 (69.94%), Query Frame = 1 Query: 340 VKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSAT 819
V FD+ D G+ V+EV P+WAPLGA RF L G F++ RFFRVL GF+AQFGI+GDPAV AK+RG ++DDPV SNKRGT+ FAT G N+RT+Q+F N+GD FLD+ GFSP G GYGEGAP G GPNQ KIQ GNAYLK SFPKLSYIK A+
Sbjct: 95 VTFDIVNEDGTGGAVVIEVHPEWAPLGAERFKELVSTGTFDENRFFRVLPGFIAQFGISGDPAVSAKWRGQNLRDDPVKVSNKRGTLTFATGGPNTRTSQIFFNYGDNQFLDRQGFSPFGTVKSGMDIVEKLYSGYGEGAPSGKGPNQGKIQKDGNAYLKESFPKLSYIKKAS 267
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S2XWI2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWI2_9STRA) HSP 1 Score: 201 bits (511), Expect = 5.750e-61 Identity = 103/179 (57.54%), Postives = 123/179 (68.72%), Query Frame = 1 Query: 337 YVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSATSVPRP 834
YVKFDVQLSD ++GSFV+EV P WAP GA RF L FF CRFFRV+K FVAQFGI+G+P VQ+++R ++DDPVTQ N +G++ FATSG +SRTTQLF N D FLD GFSP R GYGEGAP G+GP+Q+ IQ +GN YL +FP LSYI S T V P
Sbjct: 30 YVKFDVQLSDHDTGSFVLEVNPSWAPNGAQRFKELLDDDFFAGCRFFRVIKDFVAQFGIHGNPGVQSQWRDQKIKDDPVTQKNYKGSLTFATSGPDSRTTQLFFNLKDNFFLDSMGFSPFARVVIGQETVDALYSGYGEGAPSGSGPSQALIQQKGNTYLTANFPDLSYIISTTIVDYP 208
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S1C2E0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C2E0_9STRA) HSP 1 Score: 200 bits (508), Expect = 2.440e-59 Identity = 101/163 (61.96%), Postives = 120/163 (73.62%), Query Frame = 1 Query: 373 SGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDK-AFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSAT 819
+G+FVV++RPDWAP+GAARFT L++ GF+ D RFFRV+ GF+AQFGIN DPAVQA +R ++DDPV SN RGT+VFATSG NSRTTQLFIN+ D+ FLDKSGFSP G GYGEGAP G GP+Q IQ +GN YLK +P LSYI AT
Sbjct: 136 TGTFVVKLRPDWAPIGAARFTELTEQGFWNDIRFFRVIPGFIAQFGINADPAVQATWRNKSLRDDPVKVSNTRGTLVFATSGPNSRTTQLFINYSDRNTFLDKSGFSPFGEVISGMDVVDKLYGGYGEGAPSGKGPSQGLIQVKGNEYLKSQYPLLSYISKAT 298
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A517QVD7_9PLAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QVD7_9PLAN) HSP 1 Score: 195 bits (496), Expect = 3.240e-59 Identity = 96/175 (54.86%), Postives = 120/175 (68.57%), Query Frame = 1 Query: 340 VKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSATSV 825
VKF+ G F VEV P+WAPLGAA+F + + G F + RFFRV++GF+ QFGI GDPAV AK+R ++DDP TQSN RG + FAT+G N+RT+Q+FINFGD +FLD GF+P G+ GYGEGAPQG GP Q ++QS+GN YLK FP+L YIK AT V
Sbjct: 4 VKFETS-----KGDFTVEVHPEWAPLGAAQFKEIVEDGVFNEARFFRVIEGFMVQFGIAGDPAVSAKWRNKQIKDDPTTQSNTRGMITFATAGPNTRTSQVFINFGDNSFLDNQGFAPFGKVTEGMEVVDALYAGYGEGAPQGRGPGQGQVQSKGNEYLKADFPELDYIKQATVV 173 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1111.753.1 >prot_E-siliculosus-1a_F_contig1111.753.1 ID=prot_E-siliculosus-1a_F_contig1111.753.1|Name=mRNA_E-siliculosus-1a_F_contig1111.753.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=284bp PASLLLLCTPTPNTMMALMRLLACLSLCLVAVDGYNARVPTMSGGNGGAQback to top mRNA from alignment at E-siliculosus-1a_F_contig1111:26682..32649- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1111.753.1 ID=mRNA_E-siliculosus-1a_F_contig1111.753.1|Name=mRNA_E-siliculosus-1a_F_contig1111.753.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5968bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1111:26682..32649- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1111:26682..32649- >mRNA_E-siliculosus-1a_F_contig1111.753.1 ID=mRNA_E-siliculosus-1a_F_contig1111.753.1|Name=mRNA_E-siliculosus-1a_F_contig1111.753.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1704bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1111:26682..32649- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |