mRNA_E-siliculosus-1a_F_contig1111.752.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1111.752.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI) HSP 1 Score: 1058 bits (2737), Expect = 0.000e+0 Identity = 623/814 (76.54%), Postives = 640/814 (78.62%), Query Frame = 2 Query: 44 MEAPVALRRIACLAFACASLWLPACLEVAAETAAGGAARTLIDGTDSNIYHLDLLVQQPYDASTTTAPPPWFDGFGGRDGVAAITVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDVLESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTRAEGYLCGSSTSARRQRMPGDGRRAVVYNSPSFHITGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPERVVALSEHYLRDLPGEILDEEAAAALSLPESLTSEQEEERLRQQALHLERLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGLSLEGGPREGRDEQQVGREEGGHPXXXXXXXXXXXXXXKRRGRALGGDGDGDVGALDVGVEEGSDREGSRATAAVDGGDNSRGLGREELRXXXXXXXXXXXXXXXXXDAQGTGRRRELTGSEDGGGPRAVDGRGGGGRWEGGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRGGGRGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDVEVSIWNVHSVEGAFRSDHRMPPAVDDFARGVPSSAERGGGGRTPPLTFLTLYGEHVEQWERWSEEAYEGWGWDADHHPXXHGSPSSXXXXXXXXAATEEDRGAXXXXXXXXXXXXXXXXAGYLDDMERGNSTFGALFRRPGVVYPIHPTGHLRLPRPKRPFAGQEQRRQRHLS 2485
MEAPV L+R ACLAFACASLWLPACLEVAAETAAGGAARTLIDGTDSNIYHLDLLVQQPYDASTTTA PPWFDGFGGRDGVAA+TVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGK+ELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETED+LESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRST AEGYLCGSS SARRQRMPGDGRRAVVYNSPSFHITGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCP+RVVALSEHYLRDLPGEILDEEA AALSLPESLT+EQEEERLRQ QQVG E+GG+P +RRG ALGGDGDGD+GALDVGVEEGSDR+GSRA A XXXXXXXXXXXXXXXX D QGTGRRRELTGSEDGGGPRAVDGRGG G+ EGGDA EGRGGGRGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDV+VSIWNVHSVEGAFRSDHRMPPAVDDFARGVPSS+ERGGGGRTPPLTFLTLYGE WERWSEEAYEGWG XX XXXXXXXX +GA XXXXXXXXXXXXX AGYLDDMERGNSTFGALFRRPGVVYPIHPTGHLRLPRPKRPFAG++QRR HLS
Sbjct: 1 MEAPVVLQRAACLAFACASLWLPACLEVAAETAAGGAARTLIDGTDSNIYHLDLLVQQPYDASTTTAQPPWFDGFGGRDGVAAVTVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKSELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSASARRQRMPGDGRRAVVYNSPSFHITGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVALSEHYLRDLPGEILDEEAVAALSLPESLTAEQEEERLRQ---------------------------------------------------------------------QQVGGEQGGYPTGRGGQKRRGGEAGRRRGPALGGDGDGDLGALDVGVEEGSDRQGSRAAAXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXEDVQGTGRRRELTGSEDGGGPRAVDGRGGAGQREGGDAEERHGSRGLGGAELSGRVSVAAGGDGRQVEGG-EGRGGGRGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDVDVSIWNVHSVEGAFRSDHRMPPAVDDFARGVPSSSERGGGGRTPPLTFLTLYGE----WERWSEEAYEGWGXXXXXXXXX----XXXXXXXXXXXXXXXGQGAEGXXXXXXXXXXXXX-AGYLDDMERGNSTFGALFRRPGVVYPIHPTGHLRLPRPKRPFAGRQQRR--HLS 731
BLAST of mRNA_E-siliculosus-1a_F_contig1111.752.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE) HSP 1 Score: 945 bits (2442), Expect = 0.000e+0 Identity = 565/708 (79.80%), Postives = 580/708 (81.92%), Query Frame = 2 Query: 44 MEAPVALRRIACLAFACASLWLPACLEVAAETAAGGAARTLIDGTDSNIYHLDLLVQQPYDASTTTAPPPWFDGFGGRDGVAAITVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQ----AARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDVLESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTRAEGYLCGSSTSARRQRMPGDGRRAVVYNSPSFHITGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPERVVALSEHYLRDLPGEILDEEAAAALSLPESLTSEQEEERLRQQALHLERLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT--GLSLEGGPREGRDEQQVGREEGGHPXXXXXXXXXXXXXXKRRGRALGGDGDGDVGALDVGVEEGSDREGSRATAAVDGGDNSRGLGREELRXXXXXXXXXXXXXXXXXDAQGTGRRRELTGSEDGGGPRAVDGRGGGGRWEGGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRGGGRGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDVEVSIWNVHSVEGAFRSDHRMPPAVDDFARGVPSSAERGGGGRTPPLTFLTLYGEHVEQWER 2149
MEA VALRR ACL A ASLWLP +EV AE A GGAARTLIDGTDS+I+HLDLLVQQPYDAS TTA PPWFDGFGGRDGVAA+T+GHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQ AARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETED+LESGEA+YLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRST AEGYLCGSSTSARRQRMPGDGRRAVVYNSPSFH+TGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCP+RVVALSEHYLRDLPGEILDEEAAAALSLPESLT+EQEEERLRQQALHLERLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G SLEGG R G ALGGDGD GALDVGV+EGSDREGSRA NSRGLG EELR D GTGRRRE TGSEDGGGPR +DGRG G+ +GGDA EGRGGGRGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDV+VSIWNVHSVEGAFRSDHRMPPAVDDFARGVPSSAERGGGGR PPLTFLTLYGEHVEQ R
Sbjct: 1 MEALVALRRTACLGLAYASLWLPTSIEVEAEAAVGGAARTLIDGTDSSIHHLDLLVQQPYDASPTTAQPPWFDGFGGRDGVAAVTIGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQVGIPAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAYYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSTSARRQRMPGDGRRAVVYNSPSFHVTGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVALSEHYLRDLPGEILDEEAAAALSLPESLTAEQEEERLRQQALHLERLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGFSLEGGSR---------------------------------GAALGGDGDDGFGALDVGVQEGSDREGSRAAXXXXXXXNSRGLGHEELRLRRLRRKEDDERSAGE-DVLGTGRRRERTGSEDGGGPRVLDGRGCAGQRDGGDADKRHGSRGLGGAELSGRVSAAAGGDGRQVEGG-EGRGGGRGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDVDVSIWNVHSVEGAFRSDHRMPPAVDDFARGVPSSAERGGGGRPPPLTFLTLYGEHVEQLSR 673
BLAST of mRNA_E-siliculosus-1a_F_contig1111.752.1 vs. uniprot
Match: A0A6H5KJA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA8_9PHAE) HSP 1 Score: 443 bits (1140), Expect = 3.850e-144 Identity = 247/265 (93.21%), Postives = 252/265 (95.09%), Query Frame = 2 Query: 2342 MERGNSTFGALFRRPGVVYPIHPTGHLRLPRPKRPFAGQEQRRQRHLSGRREGXXXXXXXXXXXXXXXXXXXXXXXX------VVFVVQGNMQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVRAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHDYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRRSRVHSMVADDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 3118
M RGNSTFGALFRRPGVVYPIHPTGHLRLPRPKRPFAGQ+QR +RHLSGR XXXXXXXXXXXXXXXXXXXXXXXX VVFVVQGNMQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVR MQCVEQRTTEWRHLEYPEFYANISA HFVVTAAAGHDYEYDKATSTVPTALLLERPLV+SSTLLDAYPCLR+SRVHSMVA+DDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD
Sbjct: 1 MARGNSTFGALFRRPGVVYPIHPTGHLRLPRPKRPFAGQQQRWRRHLSGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEDVVFVVQGNMQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVRRMQCVEQRTTEWRHLEYPEFYANISAAHFVVTAAAGHDYEYDKATSTVPTALLLERPLVISSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 265
BLAST of mRNA_E-siliculosus-1a_F_contig1111.752.1 vs. uniprot
Match: D8LSI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI3_ECTSI) HSP 1 Score: 348 bits (893), Expect = 2.130e-109 Identity = 168/174 (96.55%), Postives = 171/174 (98.28%), Query Frame = 2 Query: 2597 MQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVRAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHDYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRRSRVHSMVADDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 3118
MQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDV AMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGH YEYDKATSTVPTALLLERPLVMSSTLLDAYPCLR+SRVHSMVA+DDLC+NLQTAYDLT EEYDEMELEARDCKLEMWRHARETVAGMASGWTLD
Sbjct: 1 MQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVSAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHGYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCVNLQTAYDLTREEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 174
BLAST of mRNA_E-siliculosus-1a_F_contig1111.752.1 vs. uniprot
Match: A0A482SI13_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI13_9ARCH) HSP 1 Score: 73.6 bits (179), Expect = 2.320e-11 Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 2 Query: 2735 VEQRTTEWRHLEYPEFYANISAGHFVVTAA-AGHDYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRRSRVHSMVADDDLCLNLQTAYDLTTEEYDEMELEARDCK 3055
+ Q T R + +P FY I+ F+VT A ++Y +A+S++PTA++ E PLV+++ LL+ Y CL +H VAD D C L+ A LT +E M E R CK
Sbjct: 7 MRQWLTVLRAVAHPYFYGAIARADFLVTFANPAYEYNITRASSSIPTAVMTEVPLVLTTDLLNKYDCLYGGSIHRRVADTDDCKALKNAIQLTDQERKTMREEIRRCK 114
BLAST of mRNA_E-siliculosus-1a_F_contig1111.752.1 vs. uniprot
Match: A0A482SHX3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHX3_9ARCH) HSP 1 Score: 66.6 bits (161), Expect = 1.410e-7 Identity = 44/177 (24.86%), Postives = 85/177 (48.02%), Query Frame = 2 Query: 2579 FVVQGNMQ-SHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVRAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHDYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRRSRVHSMVADDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASG 3106
F++QG + RR++ L C+ + R + +LV +G L ++ + TT + +Y F+ N+S+ + + + YE+ + TS++PT+L+ P+++ + LL Y CLR VH + D C +++ L E +M E C ++ +R T+ + G
Sbjct: 214 FILQGILTPGKRRDFNRLFACMIEI--KRRHDIELVLIGKVATLGANLTIPLKLSNITTVVKWPDYLGFFRNVSSADYAILFSKFDFYEHGRITSSIPTSLVSNLPIILPNKLLSDYACLRNQYVHRATSMADDCSSVKAVLSLRHERQQQMRNEVAFCVKQLLIESRATLHDIVFG 388 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1111.752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1111.752.1 >prot_E-siliculosus-1a_F_contig1111.752.1 ID=prot_E-siliculosus-1a_F_contig1111.752.1|Name=mRNA_E-siliculosus-1a_F_contig1111.752.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1026bp MEAPVALRRIACLAFACASLWLPACLEVAAETAAGGAARTLIDGTDSNIYback to top mRNA from alignment at E-siliculosus-1a_F_contig1111:12848..25301- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1111.752.1 ID=mRNA_E-siliculosus-1a_F_contig1111.752.1|Name=mRNA_E-siliculosus-1a_F_contig1111.752.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=12454bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1111:12848..25301- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1111:12848..25301- >mRNA_E-siliculosus-1a_F_contig1111.752.1 ID=mRNA_E-siliculosus-1a_F_contig1111.752.1|Name=mRNA_E-siliculosus-1a_F_contig1111.752.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6156bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1111:12848..25301- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |