mRNA_E-siliculosus-1a_F_contig1110.751.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE) HSP 1 Score: 668 bits (1724), Expect = 2.780e-238 Identity = 382/473 (80.76%), Postives = 390/473 (82.45%), Query Frame = 1 Query: 106 MVCRPFLLALLLAPRVREDDAACIAPPGWQTKVRPLLASVATRGHSTCSSRDTRIRVRRGVQTLRSAAGENRAADSANTAGEPSSSXXXXXXSPQAGVSTRRRTEDVGVREIEDGRPLPPLGVPARIAGVDSALVPLPSPPTRAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELR----------------------------LVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQN---------------------GDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377 MVCR L ALLL RVREDDAACIAPP WQTKVRP LA+VATRGHSTCSSR TRIRVRRGVQTLRSAA ENRAAD ANT GEPSSS XXXX SPQAGV TRRRTE VGVREIEDGRPLPPLGVPARIAGV+ ALVPLPSPPTRAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDG+PVRVFDGVNGEFLAAVATS RLERSGEKIGSGRGGRRGRGKRS GA+KV+ELR LVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYL++ GD SLPDIVFVCKERDVDAPPLLEALAEYEQAFSE+RRQDHVNSSD SRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL Sbjct: 1 MVCRLLLFALLLVRRVREDDAACIAPPRWQTKVRPRLAAVATRGHSTCSSRRTRIRVRRGVQTLRSAA-ENRAADPANTVGEPSSSSXXXXTSPQAGVPTRRRTEGVGVREIEDGRPLPPLGVPARIAGVNPALVPLPSPPTRAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSS-------RLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLRSLELRQSSCDLSSIIGLARDRGGDLSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEERRQDHVNSSDGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 465
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI) HSP 1 Score: 402 bits (1032), Expect = 6.980e-136 Identity = 232/300 (77.33%), Postives = 236/300 (78.67%), Query Frame = 1 Query: 625 MRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELR----------------------------LVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQN---------------------GDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377 MRLRDGNPVRVFDGVNGEFLAAVATS RLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELR LVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPP+ASPVTLASYL++ GDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDD+RNANAAFLIGPEGGFDPDEIG LAQYPFVRFVSLGRTVLRAETAAVYAL Sbjct: 1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSS---------RLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPMASPVTLASYLRSLELRHSSCDGSSIVGLARDRDGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDNRNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYAL 291
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.630e-34 Identity = 110/270 (40.74%), Postives = 148/270 (54.81%), Query Frame = 1 Query: 625 MRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKV----------------IELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYL---QNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377 MRLRDG+ VR F+G +GE+L ++ + GS G+G+RSA A + +++ L+ API++QR+K+LVEKA E+G + + PVLTA TQ+ DA RL + A+EAAEQCER+++P + P L L + + +FVC+ER +PPLLEALA A S R V SS A AAFL+GPEGGF DE LA P+++ VSLG TVLRAETAA+YAL Sbjct: 1 MRLRDGSTVRAFNGRDGEYLCTLSQTD----------------------GSSSSKPAGKGRRSAKPALALQVEQQLRSQAEDSCADLDVWLLCAPIKRQRMKLLVEKATELGVTCIAPVLTAHTQEAL--DAEGTSRLLPI-AIEAAEQCERLSLPHLHPPAPLPELLARWHSEPHTRARQLFVCQERSPQSPPLLEALA----AASAARG---VPSSA----APAAFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYAL 234
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: K2LDN9_9PROT (Ribosomal RNA small subunit methyltransferase E n=9 Tax=Thalassospiraceae TaxID=2844866 RepID=K2LDN9_9PROT) HSP 1 Score: 139 bits (349), Expect = 2.450e-34 Identity = 103/270 (38.15%), Postives = 143/270 (52.96%), Query Frame = 1 Query: 583 VQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNGDRSLPDI--VFVCKERDVDAP---PLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377 ++L PEQ+ YL VMRL+ G PV++F+G++GE+L ++ +L G+++G LVFAPI+KQRL L+EKAVE+G +L PV+T Q G ++D LDRL A VEAAEQCER+TVP V PV L ++ N LP+ + C E +P L + LA+ +F D++ N A +IGPEGGF DE+ + + PF VSLG +LRAETAA+ AL Sbjct: 24 IELAPEQSHYLEHVMRLKPGTPVKIFNGLDGEWLGTISE---LRKKKGRVTAEQQLREQGQELGP----------------------TLVFAPIKKQRLDFLIEKAVELGVEKLQPVIT---QHG-ITDKVRLDRLQAQV-VEAAEQCERLTVPEVCEPVRLLDWVAN----LPENHRLLFCDETGSGSPIGEVLSQLLAKGAGSFI-----------DNTNVVNHAIVIGPEGGFSADELERIRKQPFATPVSLGPRILRAETAAIAAL 248
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: A0A199YJ05_9PROT (Ribosomal RNA small subunit methyltransferase E n=12 Tax=Thalassospira TaxID=168934 RepID=A0A199YJ05_9PROT) HSP 1 Score: 138 bits (347), Expect = 4.750e-34 Identity = 103/270 (38.15%), Postives = 142/270 (52.59%), Query Frame = 1 Query: 583 VQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNGDRSLPDI--VFVCKERDVDAP---PLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377 ++L PEQ+ YL VMRL+ G PV++F+G++GE+L ++ +L G ++G LVFAPI+KQRL L+EKAVE+GA L PV+T Q G ++D LDRL A +EAAEQCER+TVP V PV L ++ N LP+ + C E +P L + LA+ +F D++ N A +IGPEGGF DE+ + + PF VSLG +LRAETAA+ AL Sbjct: 24 IELAPEQSHYLEHVMRLKPGTPVKIFNGLDGEWLGTISE---LRKKKGSVTAERQLRAQGNEVGP----------------------TLVFAPIKKQRLDFLIEKAVELGAQSLQPVIT---QHG-ITDKVRLDRLQAQV-IEAAEQCERLTVPEVCEPVRLLDWVAN----LPENHHLLFCDETGSGSPIGEVLSQLLAKGAGSFI-----------DNTNVVNHAIVIGPEGGFSADELERIRKQPFATPVSLGPRILRAETAAIAAL 248
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: UPI00143106BB (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Thalassospira TaxID=168934 RepID=UPI00143106BB) HSP 1 Score: 137 bits (344), Expect = 1.280e-33 Identity = 98/268 (36.57%), Postives = 137/268 (51.12%), Query Frame = 1 Query: 574 GQTVQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377 G ++L PEQ+ YL VMRL+ G PV++F+G++GE+L + +L G ++G LVFAPI+KQRL L+EKAVE+G RL PV+T Q G ++D LDRL + +EAAEQCER+TVP V PV L ++ N S + C E +P + S+ + + D++ N A +IGPEGGF DE+ + + F VSLG +LRAETAA+ AL Sbjct: 21 GSEIELAPEQSHYLEHVMRLKPGTPVKIFNGLDGEWLGTIIA---LRKKKGSVTADRQLREQGSEVGP----------------------TLVFAPIKKQRLDFLIEKAVELGVERLQPVIT---QHG-ITDKVRLDRLQSQV-IEAAEQCERLTVPEVCEPVRLLDWVANVPES--HHLLFCDETGSGSP--------IGEVLSQLLAKGAGSVIDNTNVVNHAIVIGPEGGFSADELERIRKQSFATPVSLGPRILRAETAAIAAL 248
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: A0A367XFC7_9PROT (Ribosomal RNA small subunit methyltransferase E n=5 Tax=Thalassospira TaxID=168934 RepID=A0A367XFC7_9PROT) HSP 1 Score: 135 bits (339), Expect = 6.610e-33 Identity = 101/284 (35.56%), Postives = 153/284 (53.87%), Query Frame = 1 Query: 526 PTRAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377 P R++++ A + G + L+PEQ+ YL VMRL+ G PV++F+G +GE+LA ++ R ++ + S R R ++++ G L FAPI+KQRL L+EK+VE+G +RL P++TA + ++D LDRL A +EAAEQ ER+ VP + +PV L +L N + + C E +P + EY +E + + D++ N +IGPEGGF PDEI + + F VSLG +LRAETAA+ AL Sbjct: 6 PRARQRLFVSDA-ITAGAEMALSPEQSHYLEHVMRLKPGTPVKIFNGADGEWLATISE--------------LRKKKGAVTVES-----RLRDQQNSTGPA------LAFAPIKKQRLDFLIEKSVELGVTRLMPIITAHS----ITDKVRLDRLQAQV-IEAAEQSERLDVPEIDAPVKLYDWLANWPEN--SHLLFCDETGSGSP-----IGEY---LTESLAKPAGSVIDNNNVVNHTLVIGPEGGFAPDEIDRIRKQSFATAVSLGPRILRAETAAIAAL 248
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: A0A4R3J6Z2_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3J6Z2_9PROT) HSP 1 Score: 133 bits (335), Expect = 2.590e-32 Identity = 106/282 (37.59%), Postives = 145/282 (51.42%), Query Frame = 1 Query: 541 RVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNGDRSLP---DIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377 R++++ A L G V L EQ+ YL +VMR PV +F+G +GE+L +A R G + +RL+FAP++K RL LVEK+VE+G SRL+PV+T T G V+ A + + A EAAEQCER+T+P V +P+ LA L +R LP +F ER + APP+ +AL Q +E + + AFLIGPEGGF DE+ L + PFV VSLG +LRAETAA+ AL Sbjct: 14 RLFVDTA-LTAGARVALDHEQSHYLKNVMRAGKNAPVALFNGRDGEWLGELAALGKHHGEVAIL-------------------------RQMHGQRREPNVRLIFAPLKKARLDFLVEKSVELGVSRLSPVITRHTDVGRVNVARLRAQ-----AREAAEQCERLTLPTVDAPIALAQLLDQWER-LPVGAPPLFAAVER-LSAPPIAQAL----QNVAEVQER--------------AFLIGPEGGFSRDEVALLDKAPFVFPVSLGPRILRAETAALVAL 244
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: A0A0B4XQZ3_9PROT (Ribosomal RNA small subunit methyltransferase E n=12 Tax=Thalassospira TaxID=168934 RepID=A0A0B4XQZ3_9PROT) HSP 1 Score: 131 bits (329), Expect = 1.760e-31 Identity = 96/270 (35.56%), Postives = 145/270 (53.70%), Query Frame = 1 Query: 574 GQTVQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELR--LVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377 G ++L PEQ+ YL VMRL+ G P+++F+G++GE+LA + + +K G+ R+ R ++++E L FAPI+KQRL L+EK+VE+G L P++TA ++D LDRL A +EAAEQCER++VP + PV L +L + + ++F C E +P + S+ + ++ D+ N A +IGPEGGF DEI + + PF VSLG +LRAETAA+ AL Sbjct: 21 GCEIELAPEQSHYLEHVMRLKPGTPIKIFNGLDGEWLATI-------------------DHLRKKKGTVTAERQLR--------DQIVERGPILAFAPIKKQRLDFLIEKSVEMGVGTLQPIVTAH----GITDKVRLDRLQAQV-IEAAEQCERLSVPEIVPPVKLLDWLADWPENR-HLLF-CDETGSGSP--------IGEVLSQLLAKGASSAIDNDNVVNHAIVIGPEGGFSADEIERIRKQPFATPVSLGPRILRAETAAIAAL 248
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: UPI00112381F6 (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Sphingomonas japonica TaxID=511662 RepID=UPI00112381F6) HSP 1 Score: 129 bits (324), Expect = 5.660e-31 Identity = 104/287 (36.24%), Postives = 142/287 (49.48%), Query Frame = 1 Query: 523 PPTRAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNG--DRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377 PP PR++L+ L +G ++L Q YL++VMR+RDG+P+++FD GE+LA V +E +G E V +L LV APIRK R+ LVEKA E+G R+ PVLT RT V D LDRL A +EAAEQC R +P +A P L + L++ DR+L F E P L+A+ +R AA LIGPEGGFDP+E A+ +P ++LG +LRA+TAA A+ Sbjct: 8 PPESTPRLFLD-QRLELGAHIRLDGPQAHYLIAVMRIRDGDPIKLFDDATGEWLALVRN---------IRKRDLEVEITGHLC----------------PREAVPDLWLVAAPIRKGRIDWLVEKACELGVDRVVPVLTRRT----VVDRLNLDRLRAHL-IEAAEQCGRTALPSLAEPAKLPALLRDWPTDRAL----FFADE--TGGAPALDAMR--------------------ARPGPAAILIGPEGGFDPEERAAIRAHPQAVGITLGPRILRADTAAAAAV 237 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1110.751.1 >prot_E-siliculosus-1a_F_contig1110.751.1 ID=prot_E-siliculosus-1a_F_contig1110.751.1|Name=mRNA_E-siliculosus-1a_F_contig1110.751.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=459bp TSKRATHRHLARRSPPPPLSRFPLRKQQGLQETSWMVCRPFLLALLLAPRback to top mRNA from alignment at E-siliculosus-1a_F_contig1110:30785..33202- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1110.751.1 ID=mRNA_E-siliculosus-1a_F_contig1110.751.1|Name=mRNA_E-siliculosus-1a_F_contig1110.751.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2418bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1110:30785..33202- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1110:30785..33202- >mRNA_E-siliculosus-1a_F_contig1110.751.1 ID=mRNA_E-siliculosus-1a_F_contig1110.751.1|Name=mRNA_E-siliculosus-1a_F_contig1110.751.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2754bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1110:30785..33202- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |