mRNA_E-siliculosus-1a_F_contig111.743.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig111.743.1
Unique NamemRNA_E-siliculosus-1a_F_contig111.743.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig111.743.1 vs. uniprot
Match: D7FWK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK2_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.120e-43
Identity = 93/105 (88.57%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:    1 AGGNATTEPMDGDVATSEENGDGCAAEADSGAVDPVPGAAAGQEAGGDAPDDDVDGVREAGDGGPAVVDLGEAEHDDDDAPQGRESLGFEGGTAVEQADGPERAV 315
            AGGNAT E MDG+VATSEE+ DGCAAEADSGA+DPVPGAAAGQEAGGDAPDDDVDGVREA D GPAVVDL EAEHDD  APQGRESLG EGGTAVEQADGPERAV
Sbjct: 1179 AGGNATAEAMDGNVATSEEDTDGCAAEADSGALDPVPGAAAGQEAGGDAPDDDVDGVREASDEGPAVVDLEEAEHDD--APQGRESLGVEGGTAVEQADGPERAV 1281
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig111.743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWK2_ECTSI1.120e-4388.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig111contigE-siliculosus-1a_F_contig111:4926..5284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size291
Model size359
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2CNI7@1,2QWH7@2759
Seed eggNOG ortholog2880.D7FWK2
Seed ortholog evalue1.2e-35
Seed ortholog score155.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig111.743.1prot_E-siliculosus-1a_F_contig111.743.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig111 4953..5243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927615.404591-UTR-E-siliculosus-1a_F_contig111:4925..49521622927615.404591-UTR-E-siliculosus-1a_F_contig111:4925..4952Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig111 4926..4952 +
1696318610.7337918-UTR-E-siliculosus-1a_F_contig111:4925..49521696318610.7337918-UTR-E-siliculosus-1a_F_contig111:4925..4952Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig111 4926..4952 +
1622927615.439288-UTR-E-siliculosus-1a_F_contig111:5243..52841622927615.439288-UTR-E-siliculosus-1a_F_contig111:5243..5284Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig111 5244..5284 +
1696318610.7520163-UTR-E-siliculosus-1a_F_contig111:5243..52841696318610.7520163-UTR-E-siliculosus-1a_F_contig111:5243..5284Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig111 5244..5284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927615.4223583-CDS-E-siliculosus-1a_F_contig111:4952..52431622927615.4223583-CDS-E-siliculosus-1a_F_contig111:4952..5243Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig111 4953..5243 +
1696318610.7436848-CDS-E-siliculosus-1a_F_contig111:4952..52431696318610.7436848-CDS-E-siliculosus-1a_F_contig111:4952..5243Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig111 4953..5243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig111.743.1

>prot_E-siliculosus-1a_F_contig111.743.1 ID=prot_E-siliculosus-1a_F_contig111.743.1|Name=mRNA_E-siliculosus-1a_F_contig111.743.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=97bp
MDGDVATSEENGDGCAAEADSGAVDPVPGAAAGQEAGGDAPDDDVDGVRE
AGDGGPAVVDLGEAEHDDDDAPQGRESLGFEGGTAVEQADGPERAV*
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mRNA from alignment at E-siliculosus-1a_F_contig111:4926..5284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig111.743.1 ID=mRNA_E-siliculosus-1a_F_contig111.743.1|Name=mRNA_E-siliculosus-1a_F_contig111.743.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=359bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig111:4926..5284+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGGGGGGCAATGCTACGACTGAGCCAATGGATGGCGATGTTGCTACTAG
TGAAGAGAACGGCGATGGTTGCGCTGCTGAAGCGGATAGTGGTGCGGTGG
ACCCCGTTCCGGGAGCAGCGGCGGGACAAGAAGCAGGTGGCGATGCACCC
GACGACGACGTCGACGGCGTGCGCGAGGCCGGCGATGGGGGTCCGGCTGT
CGTGGACCTCGGGGAGGCGGAGCACGACGATGACGATGCCCCTCAGGGAC
GAGAAAGCCTGGGTTTTGAGGGCGGCACGGCAGTAGAACAGGCGGACGGG
CCGGAGCGCGCTGTCTAGAGGGAGGATGGGAGCCAGAAACCTCCTACAGG
GAATCAGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig111:4926..5284+

>mRNA_E-siliculosus-1a_F_contig111.743.1 ID=mRNA_E-siliculosus-1a_F_contig111.743.1|Name=mRNA_E-siliculosus-1a_F_contig111.743.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig111:4926..5284+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGATGGCGATGTTGCTACTAGTGAAGAGAACGGCGATGGTTGCGCTGC
TGAAGCGGATAGTGGTGCGGTGGACCCCGTTCCGGGAGCAGCGGCGGGAC
AAGAAGCAGGTGGCGATGCACCCGACGACGACGTCGACGGCGTGCGCGAG
GCCGGCGATGGGGGTCCGGCTGTCGTGGACCTCGGGGAGGCGGAGCACGA
CGATGACGATGCCCCTCAGGGACGAGAAAGCCTGGGTTTTGAGGGCGGCA
CGGCAGTAGAACAGGCGGACGGGCCGGAGCGCGCTGTCTAGATGGATGGC
GATGTTGCTACTAGTGAAGAGAACGGCGATGGTTGCGCTGCTGAAGCGGA
TAGTGGTGCGGTGGACCCCGTTCCGGGAGCAGCGGCGGGACAAGAAGCAG
GTGGCGATGCACCCGACGACGACGTCGACGGCGTGCGCGAGGCCGGCGAT
GGGGGTCCGGCTGTCGTGGACCTCGGGGAGGCGGAGCACGACGATGACGA
TGCCCCTCAGGGACGAGAAAGCCTGGGTTTTGAGGGCGGCACGGCAGTAG
AACAGGCGGACGGGCCGGAGCGCGCTGTCTAG
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