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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig111.742.1 vs. uniprot
Match: D7FWK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK2_ECTSI) HSP 1 Score: 172 bits (436), Expect = 1.810e-46 Identity = 99/106 (93.40%), Postives = 100/106 (94.34%), Query Frame = 1
Query: 1 SDCSTGPAAGGSGQEVVTSVGVDEEDGGSADGNDGEGAKPEDTATPVEAVPRKTEDDPAVVASRELIELEAAEVERDLADLDARLATALTDEDYDQAAELDAQMTQ 318
SDCS GPAAGGSGQEVVTSV VDEEDGGSADGND E AKPEDTAT VEAVPRK EDDPA+VASRELIELEAAEVERDLADLDARLATALTDEDYDQAAELDAQMTQ
Sbjct: 1048 SDCSAGPAAGGSGQEVVTSVEVDEEDGGSADGNDVEAAKPEDTATHVEAVPRKAEDDPAMVASRELIELEAAEVERDLADLDARLATALTDEDYDQAAELDAQMTQ 1153
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 531 |
| Model size | 531 |
| Exons | 5 |
| Hectar predicted targeting category | other localisation |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| EggNOG OGs | 2CNI7@1,2QWH7@2759 |
| Seed eggNOG ortholog | 2880.D7FWK2 |
| Seed ortholog evalue | 7.6e-41 |
| Seed ortholog score | 173.7 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig111.742.1 >prot_E-siliculosus-1a_F_contig111.742.1 ID=prot_E-siliculosus-1a_F_contig111.742.1|Name=mRNA_E-siliculosus-1a_F_contig111.742.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=177bp
SDCSTGPAAGGSGQEVVTSVGVDEEDGGSADGNDGEGAKPEDTATPVEAV
PRKTEDDPAVVASRELIELEAAEVERDLADLDARLATALTDEDYDQAAEL
DAQMTQMRARLADFTAQAASLAQPATTTTPNPASGEAEEDTGSSGELAED
DPASRSPSLSSGAVPQEDVDVVDAAAA back to topmRNA from alignment at E-siliculosus-1a_F_contig111:1559..4877+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig111.742.1 ID=mRNA_E-siliculosus-1a_F_contig111.742.1|Name=mRNA_E-siliculosus-1a_F_contig111.742.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3319bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig111:1559..4877+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCGGACTGTTCGACAGGCCCAGCAGCTGGAGGGTCAGGGCAGGAGGTGGT
AACTTCGGTGGGGGTTGATGAAGAGGTGAGTCTCTGTCACACGAGAAGTC
TCTTTGAGGCGGGTCGGTAGTCCGTCGTTCATCGTTTTTTTTTTTTTTTT
TTTTTATATAAAAATAGAAGTTCATTTCTTTCCTTGGTTTAAGTTCCGCG
TCTAGTATGTAATGTTTTATTGTGTTTTNNNNNNNNNNGGGGGGGGGGGG
GGGGGGGGGGGCCGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGTCGGTG
GGGGGGGGTTCATCGTTTTTTTTTTTTTTTTGTACAAAGAACACAAGAAG
TTCATCTCTTCCACAGATAAAGAGTCCGCGAAGATTAGTAATGAGTTTAT
AGTGTTGTACGGTGAGTAACTTGTATTTCTGCGGTCCATTGGTTGGTTGG
TTCTTCACCGTCTTGTTTGGGGATGTGTCGAAGAGGCGGGTGACTCTCTC
ACAGAGGGCAAACAACCGCGCAGGCATTTCAAGAAGAGAAAAAACTGGCG
AAAGTAGTTGGCCAAGTGCGTGCAGCATACATGTAGAGTCAATAGTTTTG
GCAGACTTTGGTGGGCTGTCGGGTTGACAAACTTTCACAGCTAGCTTTGG
AAAATCGCAACCGGTGTAATTATGACTCTTTTCTGTCGTGATGAATTGAG
ACGAAGCGGTCGGCGCGAGAGCATGCGATGGCGTTGAGCGTTCGAAACTC
TCGTGATGCCGGTGCAAATGCTATCCCAACACATGGTAGCCAAAAGGGGG
GGTGATATTGAGCGTCATCTCCGGGGTCGGTTTCACAGCTGCCTCCCCGT
CCACCCGCCTGCCAGGATGGGGGTTCGGCAGATGGGAACGACGGAGAAGG
AGCCAAACCGGAAGATACCGCCACTCCCGTGGAAGCCGTCCCACGAAAGA
CCGAAGACGATCCGGTAAGGGGGGACGGATTTCTCGGAAGCAGCGTACGT
ACGTAAGTAGCTTGGTCGTTCGCCGTGCGTCGATGAAACCGACCTGATCA
TGCACAGTACCCTGCCGGTGTGCGTTACTATCTTCTCTCGTGTTGTTTTG
CGGTGATGGTTTGATTTACTCTTTAGTAAGAACCTAAGGGGCTGACTGAG
ATGGGATTCCTCTGTCGAAGCGTATGATGACGGGTCCGTGCTCTGGTCTT
CATTCCGTATTGCTGTTTATTACTACTTGAAAACCATACGCACACGTGAC
CTTCATGTGGATACTACGTCTCCATGCATTTGCACGACTCATGGAGAAAT
GTGGTCCCAACTCTGTACCTACCGTAGGTTGCATAAGATATCACACCCCC
TAGACCGATTTTCGAAGCTCGACATCTCGGTAGGAGAAGCAATGATGGTG
CCGAAACTGGCGGCGTTGGAACCGCCTCCTCGAGAGCTTTCCGAAAACAT
GTCCTTTGATTTCGATATCCTCTTCGTCGTGGAGGAATCGAGCTTCGAAA
ATCGGTTCTGGGGGTGTGATATCTTATGCAACCTACGGTAGCCCTTTCTT
TGGGGGGGATCAAGTTGATCGGACCTTGTAAACGAAGCTCTTGCAAACCT
TCCGTCTTTTGTCCCGTATCGTCGTCGTCAGGCTGTGGTTGCATCGAGGG
AGCTGATCGAATTGGAGGCGGCGGAGGTTGAGCGCGACCTCGCGGACCTA
GATGTGCGTATGGTAACCGCAACAGCAGTGGTCAGCCTCCAAAAAAGAGT
TTTCTCGTCGGGACCGATCTCGCGCGTGGTTCTTGAAAGTTTGCAGCAAA
CACGTTCCGGAGACGCTACGGTTTAAGAGAGCATGTTCAAGAGAAAGGGC
GGCTTTTTGAGAGTTGAAAGGGCGCACACGGGTTGACAGAAATTGTTCAA
GAGGAAAGGCGGGTCTATGAGAGTTTAAATAGCTTGTCCCGGGCGCGAGA
AATACGTGCGATATTTTTTACAGTGGAAAGGTTTCCTAGAAAGCGGATTT
TGCCATGCGTTTCCGGGCTTTTCCCGATCCCCTCCTACCGGGCAGCCGCT
ATTGAAGCAGGGGTCAACAGGCCAAGTCTAGCACTTCCTAGTTTGTACTT
TTGGGGACAGGCGCCACCATGTCAGGGATTCGTGGATTTGATGCACACCG
TTCGCAGTGGGCATGATGGATGCCCCCAAACTTTGCGAAATACCTCGACC
CGGTTTTGACTTTTATTTGAAGCGGGCCCGTATCAGCAATCAATATGATC
TTGTCCGTCCGTCCGTTTTTTTGTTTGTTTGTTTGTTGATTTCTTGCGGT
TTCTCTTGCAGGCTCGGCTGGCCACGGCTCTGACCGATGAGGACTACGAC
CAGGCAGCAGAGCTGGACGCTCAGATGACACAGGTGCGCACACGGCGGCG
TTGTGGCTGCACCGCAAGACGGACAGGGTCCTTGTATCTTTTCATCAACA
CCATGAAATAGTGAATTACTGTATTTAGCATCGAGGGGAAGTCGAGTCAC
AGGGGCCTGGGTCGGAAGAGACGCGGAGCTGTTGTTGTGGTTGCTCCCTC
TACGCTGTTAGGCGGACCCTCTTTATTGCGTGCATGGTGATTGTGGAGCA
CCAGCTCTGCAGGCATGGAGTGAAGATAAAGCAATTACGAAAATACACCG
TATACATGTTGCGGACTATTTTTTTCGTTGGCTATGGCCGGGCATATTTT
TTTGCGCTTGGTCCCCCCCCCTGCCGCGTTGGCCATGGAATAAACGAAAA
TAATCCCGCAAGGATACTGTATGCATGACCGCGTTTTTTTTGGCTTGGGG
CCCCACCCCACCCGTCGGCCTTGTATGCTGGCCAGCTGAACCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTCCCCC
CCTTTTTTTCCCCCCCCTCTTCTCCATCCCCCCCCCCCCCCCNNNNNNNN
NNTTTCGTGCTCCTCTTTTTTTTGTCTGTCCGCCCCCCCCCCCCCTCGCC
CCCTTTTTCCCCCCTCCTTTCCCCCCCCCCCCCCCCCCCCTCGCCTTTCA
TCCATCGCATGACTTCCTCTGTTTTTCACGCTCTGTTTTTCACGCTTCCT
TGTCAGATGCGCGCCCGCCTCGCCGACTTTACAGCGCAAGCCGCTTCTCT
CGCCCAGCCAGCGACAACCACCACCCCCAATCCCGCCAGCGGCGAGGCAG
AAGAAGACACTGGTAGCAGCGGCGAGCTAGCGGAGGACGATCCCGCGAGC
CGATCACCTTCCTTGTCGAGCGGCGCCGTACCGCAGGAAGACGTAGATGT
TGTTGACGCTGCAGCGGCC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig111:1559..4877+ >mRNA_E-siliculosus-1a_F_contig111.742.1 ID=mRNA_E-siliculosus-1a_F_contig111.742.1|Name=mRNA_E-siliculosus-1a_F_contig111.742.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1062bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig111:1559..4877+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCGGACTGTTCGACAGGCCCAGCAGCTGGAGGGTCAGGGCAGGAGGTGGT
AACTTCGGTGGGGGTTGATGAAGAGTCGGACTGTTCGACAGGCCCAGCAG
CTGGAGGGTCAGGGCAGGAGGTGGTAACTTCGGTGGGGGTTGATGAAGAG
GATGGGGGTTCGGCAGATGGGAACGACGGAGAAGGAGCCAAACCGGAAGA
TACCGCCACTCCCGTGGAAGCCGTCCCACGAAAGACCGAAGACGATCCGG
ATGGGGGTTCGGCAGATGGGAACGACGGAGAAGGAGCCAAACCGGAAGAT
ACCGCCACTCCCGTGGAAGCCGTCCCACGAAAGACCGAAGACGATCCGGC
TGTGGTTGCATCGAGGGAGCTGATCGAATTGGAGGCGGCGGAGGTTGAGC
GCGACCTCGCGGACCTAGATGCTGTGGTTGCATCGAGGGAGCTGATCGAA
TTGGAGGCGGCGGAGGTTGAGCGCGACCTCGCGGACCTAGATGCTCGGCT
GGCCACGGCTCTGACCGATGAGGACTACGACCAGGCAGCAGAGCTGGACG
CTCAGATGACACAGGCTCGGCTGGCCACGGCTCTGACCGATGAGGACTAC
GACCAGGCAGCAGAGCTGGACGCTCAGATGACACAGATGCGCGCCCGCCT
CGCCGACTTTACAGCGCAAGCCGCTTCTCTCGCCCAGCCAGCGACAACCA
CCACCCCCAATCCCGCCAGCGGCGAGGCAGAAGAAGACACTGGTAGCAGC
GGCGAGCTAGCGGAGGACGATCCCGCGAGCCGATCACCTTCCTTGTCGAG
CGGCGCCGTACCGCAGGAAGACGTAGATGTTGTTGACGCTGCAGCGGCCA
TGCGCGCCCGCCTCGCCGACTTTACAGCGCAAGCCGCTTCTCTCGCCCAG
CCAGCGACAACCACCACCCCCAATCCCGCCAGCGGCGAGGCAGAAGAAGA
CACTGGTAGCAGCGGCGAGCTAGCGGAGGACGATCCCGCGAGCCGATCAC
CTTCCTTGTCGAGCGGCGCCGTACCGCAGGAAGACGTAGATGTTGTTGAC
GCTGCAGCGGCC back to top
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