Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 174 |
| Model size | 339 |
| Exons | 3 |
| Hectar predicted targeting category | no signal peptide or anchor |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927613.3923435-UTR-E-siliculosus-1a_F_contig1108:19485..19511 | 1622927613.3923435-UTR-E-siliculosus-1a_F_contig1108:19485..19511 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1108 19486..19511 - |
| 1696318609.9920294-UTR-E-siliculosus-1a_F_contig1108:19485..19511 | 1696318609.9920294-UTR-E-siliculosus-1a_F_contig1108:19485..19511 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1108 19486..19511 - |
| 1622927613.403697-UTR-E-siliculosus-1a_F_contig1108:20440..20579 | 1622927613.403697-UTR-E-siliculosus-1a_F_contig1108:20440..20579 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1108 20441..20579 - |
| 1696318609.9997642-UTR-E-siliculosus-1a_F_contig1108:20440..20579 | 1696318609.9997642-UTR-E-siliculosus-1a_F_contig1108:20440..20579 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1108 20441..20579 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927613.4254258-CDS-E-siliculosus-1a_F_contig1108:20579..20721 | 1622927613.4254258-CDS-E-siliculosus-1a_F_contig1108:20579..20721 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1108 20580..20721 - |
| 1696318610.0080705-CDS-E-siliculosus-1a_F_contig1108:20579..20721 | 1696318610.0080705-CDS-E-siliculosus-1a_F_contig1108:20579..20721 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1108 20580..20721 - |
| 1622927613.9068966-CDS-E-siliculosus-1a_F_contig1108:22138..22170 | 1622927613.9068966-CDS-E-siliculosus-1a_F_contig1108:22138..22170 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1108 22139..22170 - |
| 1696318610.0154798-CDS-E-siliculosus-1a_F_contig1108:22138..22170 | 1696318610.0154798-CDS-E-siliculosus-1a_F_contig1108:22138..22170 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1108 22139..22170 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1108.731.1 >prot_E-siliculosus-1a_F_contig1108.731.1 ID=prot_E-siliculosus-1a_F_contig1108.731.1|Name=mRNA_E-siliculosus-1a_F_contig1108.731.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=58bp
QSCTDGAHPGSWYSSHNPRRRDTANTGRLSDIMSGFGIMDDTKPTTTTDF
KLRDDGT* back to topmRNA from alignment at E-siliculosus-1a_F_contig1108:19486..22170- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1108.731.1 ID=mRNA_E-siliculosus-1a_F_contig1108.731.1|Name=mRNA_E-siliculosus-1a_F_contig1108.731.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2685bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1108:19486..22170- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGAGCTGTACGGACGGTGCTCACCCTGGAAGGTGAGTGCGGCGACAAGG
GATACTGCTGTAAATTTGCATGATCAACGGAGCGTCAACGCCAATTTTCG
CCCAACAAACGCGGGGGAAAAAGAAAACGCTGCAAGTCATGTACAAACAA
CAAGAGCATCCGCCACGAAGCCGAAAAACACAGACGGAGCTGAGAAGAGA
TCTGAGCTCAACAGTCGAAGCTGTCAAACAAACCGAGCCCAACCTGCAAA
CGAGCCGAAGCTCAACAGCAAGCTGGCAACGAGCCGAACTCAAACGACGG
CAGCGGCTACATGTACAGCGGAGAGCCTGAGCTCAACAACTGCTGTTGTT
TCTGGAACCGAAGTTCCGAGGCAGGTGCGTATAAAATAAAGGTAGAATCG
AGCAGAGACACGCTGAGGCGAACGTCTCCCGCCGGCATTCAGCACGAAGC
TCAGACGGGCGGGCCGCAGTCATGAGAGGGTCAGCCACACTCGAGCCCTA
CAGGCGGGAAGAGGGCGTATATATGCAACCATCATGGTCGAGAGGGTAAA
AATTGCAATACAACAGCAAAATATTCAAGGACACATCAAGTTTGCTCGCT
TGCACCTGACGATGCACCTGAATACCCGTGTACGCGAATTGTCACGTGGA
TCATCAAGACACGACACCACCAGTAGTAAACGGTGGTCAACACATGAGCA
AGGAATTCCTGGTCCCCACCGCATGAACGGAAAAATGCGAACAAAAATAA
ACCACAATGGCACAACAACGACAGCAGTAGTAGACTACTATAATAGACTA
CTGTGTGCGTATCACATCGAGAGTAGTCGATACTTACCGGTTGGTTGTGA
CCTCGGGTCGCCCACCCCACTGGACACGTGATGTAGCTTCGGCTCCCTCG
TCTGTGTCTGCAGTTTCGACTGCTCGCAAAACGGCCCTAACCGGTTGTTT
ACGACTTCGGTCACCCACCCCACTCGACACGTGATGTAGCTTCGGCTCAC
ACGTCTGTGTCTGCAGTTTCGACTGCTCGCAAACGGCACTAACCGCTGTT
TGTTTATGACTTCGGTCACCCACCCCACTGGATACGTGCTGTAGCTTCGG
CTCACACTCGCCTGTGACTGCAGTTTCGACTGCTCGCCGTGCTCACACCG
CGGGTCCATGCCACTTGTTTCGACTATGCTCGCAGTTTCGACTGCCCGCC
GTGCTCGCACCGCGGTTTCCTTACCTGTTGTTTCGACAACCACCCCATTG
TTTGTTGCTGCTTCGGCGTCTCTAGCTGTAACCTCGGTTACTGCTGCAGT
CTCGACTGTAACCTGCTAGGTAACTGCCGCTTCGGCGCCATTTGGAACCT
CGGTTGCTCCTGCAGTTTCGACTGTTCCACCTGCTACAGTATCTTGAATT
CTCCGGTGACCCCCCCCCCCTTCCACGCTTCCTTCCATCCACGATCAAGC
TGGTACAGCAGTCACAACCCGAGGCGACGAGACACCGCCAACACCGGCCG
ACTCTCGGACATCATGTCCGGCTTCGGCATCATGGACGACACTAAACCGA
CGACAACCACGGACTTCAAGCTCCGAGACGATGGGACCTGAGCGACCTCT
CTCTTCGCCGACCAGGTGTTCGGCTGCTGCTGAAGGCGCGATTTCACCTA
CGAAGGAGGGACTTTCGGGATGATTGGACGCCGCCGCCGGTGGTGTCTCA
TGAGCCCACGCTGGCAGGGCCTTACTACCGGTGTGCTGCTGGAGTTCAAT
GTGGAGCATTTGTTTTTTCGGGATCGTTTTGTTCGGCTCCGGCCCCTATT
TCGGCTTCGGCCTCTGTTTCGGCCTCGGCCTTCTTTCGGCTTCGGCCCCC
CATTCAACTTCGGTTGTTTGTTCGGCTTCGCCCCCCCCCAGTTTCTTCGG
AAACCCGTGTTGCGTTTCCGAACCTTCCCCCGGCTTCGGCTCCCCCCAGT
TTCTTCGGAAACCCGTGTTGCGTTTTCGCACCTTCCCCCGGCTTCGGCCC
CCCCGTTTCCTCGGAAACCCGTGTTGCGTTTTCGAACCTTCCCCCAGCTT
CGGCGCCCACCGTTTCTTCGGAAACTACTGCACCCCCTGTTTTTTCCACC
GCTCATCATCCCGTAGATTCAGTAATCGTGCAGAACATTGGGTTTTCGAC
CCCACCCCCCTCTTCGGCGTCTGTCCACCTGTGCCGGGTGTTTCGCGTGC
TGTGTGGTCTTCGGACCATGCTTCCTCTGCTGCTTCGGTAGCCGCTGTCA
CACCCCCTGTTGTTCCCAATGATTGTGTTTTGCCACTTTCGTCAAACATT
GCACATACATGCCCGTCAACCCGATCGATGCGACTGATGCTACTGCTCGT
GCTGCTCATGTCACTACGGTGAACGCGCGTACATCGCTCTTAACTTGAAA
AAAGTCGAGAATGTCGCTACCATGCCCGTCCCCACAACTCTGTTGCCGAG
AGATGGCTATCAACAGCTTCTCCGCAAAACACGCGCGGCCTTGTCCGACG
TTTTGTTACTGTGTGATGAAAAGAGTGTTGGTGGGTTGAACGGCTCTGAT
TTCGTTCGTGGATGGGAACGTCCCCTCGAAAAAAAACTTTTGAGTGCGAT
CACCCCTGACAAGCCCTCTACTGCCGACCTCGTTCTCTCCATTTACTGAT
TTTTTTCAGCAAGTGAGCCGGAGCTTGGATGGTGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1108:19486..22170- >mRNA_E-siliculosus-1a_F_contig1108.731.1 ID=mRNA_E-siliculosus-1a_F_contig1108.731.1|Name=mRNA_E-siliculosus-1a_F_contig1108.731.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1108:19486..22170- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGAGCTGTACGGACGGTGCTCACCCTGGAAGCAGAGCTGTACGGACGGT
GCTCACCCTGGAAGCTGGTACAGCAGTCACAACCCGAGGCGACGAGACAC
CGCCAACACCGGCCGACTCTCGGACATCATGTCCGGCTTCGGCATCATGG
ACGACACTAAACCGACGACAACCACGGACTTCAAGCTCCGAGACGATGGG
ACCTGACTGGTACAGCAGTCACAACCCGAGGCGACGAGACACCGCCAACA
CCGGCCGACTCTCGGACATCATGTCCGGCTTCGGCATCATGGACGACACT
AAACCGACGACAACCACGGACTTCAAGCTCCGAGACGATGGGACCTGA back to top
|