mRNA_E-siliculosus-1a_F_contig11074.728.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11074.728.1
Unique NamemRNA_E-siliculosus-1a_F_contig11074.728.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11074.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11074contigE-siliculosus-1a_F_contig11074:1013..1531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size249
Model size482
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11074.728.1prot_E-siliculosus-1a_F_contig11074.728.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11074 1160..1445 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927613.2508268-UTR-E-siliculosus-1a_F_contig11074:1012..11591622927613.2508268-UTR-E-siliculosus-1a_F_contig11074:1012..1159Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11074 1013..1159 +
1696318609.93411-UTR-E-siliculosus-1a_F_contig11074:1012..11591696318609.93411-UTR-E-siliculosus-1a_F_contig11074:1012..1159Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11074 1013..1159 +
1622927613.2880685-UTR-E-siliculosus-1a_F_contig11074:1445..15311622927613.2880685-UTR-E-siliculosus-1a_F_contig11074:1445..1531Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11074 1446..1531 +
1696318609.9561467-UTR-E-siliculosus-1a_F_contig11074:1445..15311696318609.9561467-UTR-E-siliculosus-1a_F_contig11074:1445..1531Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11074 1446..1531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927613.2610419-CDS-E-siliculosus-1a_F_contig11074:1159..12541622927613.2610419-CDS-E-siliculosus-1a_F_contig11074:1159..1254Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11074 1160..1254 +
1696318609.9415188-CDS-E-siliculosus-1a_F_contig11074:1159..12541696318609.9415188-CDS-E-siliculosus-1a_F_contig11074:1159..1254Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11074 1160..1254 +
1622927613.2707772-CDS-E-siliculosus-1a_F_contig11074:1291..14451622927613.2707772-CDS-E-siliculosus-1a_F_contig11074:1291..1445Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11074 1292..1445 +
1696318609.9489367-CDS-E-siliculosus-1a_F_contig11074:1291..14451696318609.9489367-CDS-E-siliculosus-1a_F_contig11074:1291..1445Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11074 1292..1445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11074.728.1

>prot_E-siliculosus-1a_F_contig11074.728.1 ID=prot_E-siliculosus-1a_F_contig11074.728.1|Name=mRNA_E-siliculosus-1a_F_contig11074.728.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp
MGVKQRNGSHCHSSSKRERSRGVGVLLRIRHTDRKWGARGGGAKQTYDAA
NSNRNMRNEGEMVRWSIHVRAPLERSGLALFE*
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mRNA from alignment at E-siliculosus-1a_F_contig11074:1013..1531+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11074.728.1 ID=mRNA_E-siliculosus-1a_F_contig11074.728.1|Name=mRNA_E-siliculosus-1a_F_contig11074.728.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=519bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11074:1013..1531+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCCCGCACACCCACCCGCCGTGGCCCAATCCCTTCCACATGTGGAAGCA
AATCAGTAACAGCAGACCTGTGCCTGCTCTCTGACTTCACAACAAGAAAT
GTTTGTTGGCGACGCGCTCTTCTTGCCGTCGGAAAAACTCACGACCGATG
GGTGTAAAACAAAGAAATGGAAGTCACTGCCACAGCAGCAGCAAGAGAGA
GCGAAGTCGAGGCGTTGGTGTGCTGTTGCGCATTCGCCACACGAGATTCA
GGTACGATGTAGGGATGATGTCGTGCATTGGACCGTAAATGGGGTGCCCG
GGGGGGGGGAGCGAAGCAGACATACGACGCCGCCAACAGCAATCGAAACA
TGAGAAATGAGGGTGAGATGGTGAGATGGTCCATCCACGTGAGAGCACCG
TTGGAACGGTCAGGGCTGGCTCTGTTTGAATGATTAAATTGTGTTCCGAC
CACCACACCGCGGTGCCGGATGGGCTCTATCAGCATGTAGTGTGCCCGTA
CCTGCCGTCACTGTTCATA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11074:1013..1531+

>mRNA_E-siliculosus-1a_F_contig11074.728.1 ID=mRNA_E-siliculosus-1a_F_contig11074.728.1|Name=mRNA_E-siliculosus-1a_F_contig11074.728.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11074:1013..1531+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGTGTAAAACAAAGAAATGGAAGTCACTGCCACAGCAGCAGCAAGAG
AGAGCGAAGTCGAGGCGTTGGTGTGCTGTTGCGCATTCGCCACACATGGG
TGTAAAACAAAGAAATGGAAGTCACTGCCACAGCAGCAGCAAGAGAGAGC
GAAGTCGAGGCGTTGGTGTGCTGTTGCGCATTCGCCACACGGACCGTAAA
TGGGGTGCCCGGGGGGGGGGAGCGAAGCAGACATACGACGCCGCCAACAG
CAATCGAAACATGAGAAATGAGGGTGAGATGGTGAGATGGTCCATCCACG
TGAGAGCACCGTTGGAACGGTCAGGGCTGGCTCTGTTTGAATGAGGACCG
TAAATGGGGTGCCCGGGGGGGGGGAGCGAAGCAGACATACGACGCCGCCA
ACAGCAATCGAAACATGAGAAATGAGGGTGAGATGGTGAGATGGTCCATC
CACGTGAGAGCACCGTTGGAACGGTCAGGGCTGGCTCTGTTTGAATGA
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