mRNA_E-siliculosus-1a_F_contig1106.722.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1106.722.1 vs. uniprot
Match: D8LIW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIW9_ECTSI) HSP 1 Score: 1233 bits (3191), Expect = 0.000e+0 Identity = 725/815 (88.96%), Postives = 740/815 (90.80%), Query Frame = 1 Query: 1129 MEGVRARTREDGTPKVTFPRNFDEIVGLMGRNDLEDRSPDQASAASNRSGCAGKGAGGNSREGGGGKASGRETGDRAPPWTKYLLEEGLDRTKEFSRYRGMFAEEQTGEDRLMRGLAKMRELDVRLARVTGRARELKLMAREAAEQAERAAVVGTATSKGEQAPCLKGRGPVAVEDVPTNQPPLRLPLPLSSESAPFGPVSSRVSIGSARKSEATALGTERSETSVASGSQHDGDGGASNSRDRQAMRGRAFVTQNFRGTARTGVSSSNAGSTAISVNGSDDNTCNSRPQCFSRGKKGVGSHGGDSXXXXXXXXXXXXXXXXXXXXXXXXXVSFVLRNKRYAARASRGRLTDEEESLVSRFVEDADGFNDDGEPTGEEPSGVWAEITPYGGIGASEDSARLAEINAKLLAMRGAETLDRDDNAQEEKGAPINASEQQQQRSPKTATDSEPARVQNDRGREAPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPRYATTPGDAALREQRAKREARCRERAIDTALEQLRDFLFKESVAGGRSLRXXXXXXXXXLARSAPLDMQGRVRRGAGRVDSLLGGEGPQPVGEWEVKHALRQGEEELHGKDLASRERIEELLATVRQESAATAASRSATDPPPPQHGSDAIDPDRFPHGTSLDDFFSLKDGPAEIEPPLAAAATGRPRLMLPLSGSQSFPHAEAKHDEGRGGAGTNGETPPEQAGREITGGPSTGRSAAVSDEVSTTSVEGPPGAARRARPRLPRKKKNSTAVPPELAALFRAPLLVPRHLEPPIAGIAAAAVAAGGSRRVKPGAGARIVG 3573
MEGVRARTREDGTPKVTFPRNFDEIVGLMGRNDLEDRSPDQASAASNRSG AGKGAGGNSREGGGGKASGRETGDRAPPWT+YLLEEGLDRTKEFSRYRGMFAEEQTG DRLMRGLAK+RELDVRL RVTGRARELKLMAREAAEQAERAA VG ATSKGE+A CLKGRGPVAVEDVPTN PPLRLPLPLSSE APFGPVSSRVSIGSARKSEA A QHDGDGGASNSRDRQA RGRAFVTQNFRGTARTG SNAGSTAISVNGSDDNTC+SR Q FSRGK GVGSHGGDS XXXXXXXXXXXXXXXXXVSFVLRNKRYAARASRGRLTDE+ESLVSRFV+DADGFNDDGEPTGEEPSGVWAEITPYGG G SED+ARLAEINAKLLAMRGAETLDRDD+ QEEKGAPINASEQQQ RSPKTATD EPARVQND GREAPPPXXXXXXXXXXXXXXX AVP YATTPGDAALREQRAKREARCRERAIDTALEQLRD LFKESVAGGRSLR LARSAPLDMQGRVRRGAGR+DSLLGGEGPQPVGEWEVKHALRQGEEEL GKDLASRERIEE+LATVRQE+AATAASRSAT+PPPPQHGSDAIDPDRFPHGTSLDDFFSLKDGPAEIEP LAAAATGRPRLMLPLSGSQ FPHAEAKHDEG+GGAGT+GETPPEQAGREIT GPSTGRSAAVSDEVSTTS EGPPGAAR ARPRLPRKKKN TAVPPE+AALFRAPLLVPRHLEPPIAGIAAAAVAAGGSRRVKPGA ARIVG
Sbjct: 1 MEGVRARTREDGTPKVTFPRNFDEIVGLMGRNDLEDRSPDQASAASNRSGYAGKGAGGNSREGGGGKASGRETGDRAPPWTQYLLEEGLDRTKEFSRYRGMFAEEQTGGDRLMRGLAKIRELDVRLLRVTGRARELKLMAREAAEQAERAAAVGIATSKGERALCLKGRGPVAVEDVPTNHPPLRLPLPLSSELAPFGPVSSRVSIGSARKSEAIAXXXXXXXXXXXXXXQHDGDGGASNSRDRQARRGRAFVTQNFRGTARTG-GYSNAGSTAISVNGSDDNTCSSRAQGFSRGKSGVGSHGGDSGSQNEGRGXXXXXXXXXXXXXXXXXVSFVLRNKRYAARASRGRLTDEQESLVSRFVQDADGFNDDGEPTGEEPSGVWAEITPYGGTGTSEDNARLAEINAKLLAMRGAETLDRDDDTQEEKGAPINASEQQQ-RSPKTATDIEPARVQNDCGREAPPPXXXXXXXXXXXXXXXSGTKGAAAATA-AVPGYATTPGDAALREQRAKREARCRERAIDTALEQLRDSLFKESVAGGRSLREKAVDAALELARSAPLDMQGRVRRGAGRIDSLLGGEGPQPVGEWEVKHALRQGEEELRGKDLASRERIEEILATVRQETAATAASRSATNPPPPQHGSDAIDPDRFPHGTSLDDFFSLKDGPAEIEPQLAAAATGRPRLMLPLSGSQRFPHAEAKHDEGKGGAGTSGETPPEQAGREITRGPSTGRSAAVSDEVSTTSGEGPPGAARHARPRLPRKKKNYTAVPPEVAALFRAPLLVPRHLEPPIAGIAAAAVAAGGSRRVKPGARARIVG 812
BLAST of mRNA_E-siliculosus-1a_F_contig1106.722.1 vs. uniprot
Match: A0A7S2GLI8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLI8_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 9.060e-11 Identity = 49/176 (27.84%), Postives = 87/176 (49.43%), Query Frame = 1 Query: 1081 EDDDVYKNARKDLQQYMEGVRARTREDGTPKVTFPRNFDEIVGLMGRNDL-EDRSPDQASAASNRSGCAGKGAGGNSREGGGGKASGRETGDRAPPWTKYLLEEGLDRTKEFSRYRGMFAEEQTGEDRLMRGLAKMRELDVRLARVTGRARELKLMAREAAEQAERAAVVGTATSK 1605
E+ + + K L Q++ VR E G PKV FP N+D +V +MGR D+ E + Q+ + G G W+++ L+EGL++ ++RY+G+ + +++ + L +GLAK+ LD+ L T +++E+K+ A + A VG++ SK
Sbjct: 35 EEPESREELHKSLAQFLVSVRESKDEKGMPKVIFPENYDSVVNMMGRKDIAESKEATQSDRGDDPKGAPGAN------------------------WSQFALQEGLEQVGPYARYKGIMSADESQQQTLQQGLAKIHHLDLLLQAKTRKSKEIKVSADIRDDVVVSARSVGSSRSK 186 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1106.722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1106.722.1 >prot_E-siliculosus-1a_F_contig1106.722.1 ID=prot_E-siliculosus-1a_F_contig1106.722.1|Name=mRNA_E-siliculosus-1a_F_contig1106.722.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1192bp MALLGRADDIADAFANAASCCVQPASPRVGKRPRTTSSIFAAAAKDMLSPback to top mRNA from alignment at E-siliculosus-1a_F_contig1106:14970..21787- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1106.722.1 ID=mRNA_E-siliculosus-1a_F_contig1106.722.1|Name=mRNA_E-siliculosus-1a_F_contig1106.722.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6818bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1106:14970..21787- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1106:14970..21787- >mRNA_E-siliculosus-1a_F_contig1106.722.1 ID=mRNA_E-siliculosus-1a_F_contig1106.722.1|Name=mRNA_E-siliculosus-1a_F_contig1106.722.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=7152bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1106:14970..21787- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |