mRNA_E-siliculosus-1a_F_contig11058.720.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11058.720.1 vs. uniprot
Match: D7FU99_ECTSI (Similar to DNA primase large subunit, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU99_ECTSI) HSP 1 Score: 601 bits (1549), Expect = 2.020e-209 Identity = 320/361 (88.64%), Postives = 334/361 (92.52%), Query Frame = 1
Query: 1 DRRSSRREWFVRAERDLFKARLHWHLQQNEGGGSKEGIAGRCSGGASSADLGARANIADRLEALRLFYNLEWLQPVGPAAPDCSRVEKQRESGHEGSYAREGVSTSSSXXXXXXXXXXXXXXXXXAGRKRREGDDPFREHSRSSTPGACSSGDASHGTLGRQLPPSSKRKKLPQCSAVKGGGDIGYLSCPFERVLPLVRSRRVLLRDGKALLSPDQLPEAVIQHFEGRLREGLAIAERGLPGVEADDRVAEVLRQVRRAVDSLVTGGGWHGRDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKGMPADEYARKRNQLSAV 1083
DRRSSRREWFVRAERDLF+ARLHWHLQQNEGGGSKEGIAGRC+GGASSADLGARA+IADRLEALR+FYNLEWLQPVGPAAPDCSR+EKQRESGHEGS+AREGV TSS XXXXXXXXXXXX +GDDPFREHSRS +PGACS GDASH TL RQLPPSS+RKKLP+ A KGG DIGYLSCPFE+VLPLVRSRRVLLRDGKALLSPDQLPEAV+QHFEGRLREGLAIAERGLPGVEAD RVAEVLRQVR AVDSLV+GGG G DADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFL NAGMEVDEILGLWREEFPKGMPADEYARKRNQLSA+
Sbjct: 121 DRRSSRREWFVRAERDLFEARLHWHLQQNEGGGSKEGIAGRCNGGASSADLGARASIADRLEALRIFYNLEWLQPVGPAAPDCSRMEKQRESGHEGSHAREGVCTSSYGGKGCXXXXXXXXXXXXXXXXXXDGDDPFREHSRSYSPGACSRGDASHVTLERQLPPSSERKKLPESVAFKGGSDIGYLSCPFEKVLPLVRSRRVLLRDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQLSAL 481
BLAST of mRNA_E-siliculosus-1a_F_contig11058.720.1 vs. uniprot
Match: A0A2L2YIM2_PARTP (DNA primase large subunit n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YIM2_PARTP) HSP 1 Score: 105 bits (262), Expect = 2.530e-20 Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = 1
Query: 556 YLSCPFERVLPLVRSRRVLLRDGKALLSPDQLPEAVIQHFEGRLREGLAIAERGLPGVEADDRVAEVLRQVRRAVDSLVTGGGWHGRDADNRSMAI---ITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKGMPADEYARK 1062
+ PF VL L+++R+V L G A + + L V+ + L LA+ R LP +E D R+ +L + + + G D N+ + IT ID L++ FPLCMR LR+ HHLKY RLQ FL G+ +D+ L WREEF K M +D++ ++
Sbjct: 191 FYKVPFTEVLDLIKNRKVYLERGLAYIPEEDLVVTVVSAYRAHLSHALAVTSRALPQLEEDTRLISMLSTLHQR---------YIGTDYSNKKASFTGEITPDQIDNLSKVAFPLCMRNLHETLRKNHHLKYNGRLQYGLFLKGIGLSLDDALRFWREEFTKVMDSDKFDKQ 353
BLAST of mRNA_E-siliculosus-1a_F_contig11058.720.1 vs. uniprot
Match: A0A4Y2B4J4_ARAVE (DNA primase large subunit n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2B4J4_ARAVE) HSP 1 Score: 105 bits (261), Expect = 3.280e-20 Identity = 61/172 (35.47%), Postives = 87/172 (50.58%), Query Frame = 1
Query: 556 YLSCPFERVLPLVRSRRVLLRDGKALLSPDQLPEAVIQHFEGRLREGLAIAERGLPGVEADDRVAEVLRQVRRAVDSLVTGGGWHGRDADNRS---MAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKGMPADEYARK 1062
+ PF VL LV++R+V L G A + D L V+ + L LAI R LP +E D R+ +L + + + G D N+ + +T ID L++ FPLCMR LR+ HHLKY RLQ FL G+ +D+ L WREEF K M D++ ++
Sbjct: 190 FYKVPFIEVLDLVKNRKVFLEKGYAYIPEDDLVITVLSAYRAHLSHALAITSRALPQLEEDTRLISMLSTLHQR---------YIGTDYTNKKPNFIGDVTPDQIDSLSKTSFPLCMRNLHDTLRKNHHLKYNGRLQYGLFLKGIGLSLDDALRFWREEFTKVMDVDKFDKQ 352
BLAST of mRNA_E-siliculosus-1a_F_contig11058.720.1 vs. uniprot
Match: A0A087SZT7_STEMI (DNA primase large subunit (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087SZT7_STEMI) HSP 1 Score: 102 bits (254), Expect = 1.990e-19 Identity = 62/186 (33.33%), Postives = 93/186 (50.00%), Query Frame = 1
Query: 514 LPQCSAVKGGGDIGYLSCPFERVLPLVRSRRVLLRDGKALLSPDQLPEAVIQHFEGRLREGLAIAERGLPGVEADDRVAEVLRQVRRAVDSLVTGGGWHGRDADNRSMAI---ITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKGMPADEYARK 1062
L C+ K I + PF VL L+++R+V L+ G A + D + + + L LAI R LP +E D R+ +L + + + G D NR + IT + ID L++ FPLCM+ LRR HHLKY RLQ FL G+ +++ L WR+EF K M D++ ++
Sbjct: 176 LGHCNPAKARS-IDFYKVPFVEVLDLIKNRKVFLKKGFAYIPEDDMVITIASAYRAHLSHSLAITSRALPQLEEDTRLISMLSTLHQR---------YIGTDYSNRKVDYAGDITPEFIDGLSKTSFPLCMQNLHETLRRNHHLKYNGRLQYGLFLKGIGLTLEDALRFWRQEFTKIMDNDKFDKQ 351
BLAST of mRNA_E-siliculosus-1a_F_contig11058.720.1 vs. uniprot
Match: A0A165H454_9APHY (DNA primase large subunit n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165H454_9APHY) HSP 1 Score: 102 bits (254), Expect = 2.210e-19 Identity = 59/157 (37.58%), Postives = 79/157 (50.32%), Query Frame = 1
Query: 556 YLSCPFERVLPLVRSRRVLLRDGKALLSPDQLPEAVIQHFEGRLREGLAIAERGLPGVEADDRVAEVLRQVRRAVDSLVTGGGWHGRDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEF 1026
Y + RV LV RRVLL+ G A + + V Q F+ RL + L + + LP ++ D R+ +L + + + G A + S IT ID LA KHFPLCMR LRREHHLK+ RLQ FL G+ +DE + WR F
Sbjct: 189 YYKVKWTRVPDLVEKRRVLLKGGMAYVPSREQSSIVFQEFQTRLTKALEMTAKALPRLDEDTRIVPILDNLSQG---FLAGVSSEWSTATSSSAGEITADMIDDLARKHFPLCMRNLHETLRREHHLKHFGRLQYGLFLKVLGLSIDEAITFWRRSF 342
BLAST of mRNA_E-siliculosus-1a_F_contig11058.720.1 vs. uniprot
Match: A0A3Q2Q406_FUNHE (DNA primase large subunit n=3 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2Q406_FUNHE) HSP 1 Score: 102 bits (254), Expect = 2.370e-19 Identity = 56/168 (33.33%), Postives = 95/168 (56.55%), Query Frame = 1
Query: 556 YLSCPFERVLPLVRSRRVLLRDGKALLSPDQLPEAVIQHFEGRLREGLAIAERGLPGVEADDRVAEVLRQVRRAVDSLVTGGGWHGRD-ADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKG-MPADEY 1053
+ PF+ L LVR+R+V L++G A + ++ V+ F RL + LA+ R LP V +D+R+ +L + + + G+D + +++ I+ + ID LA K FPLCMR+ + LR HHL+Y R+Q FL G+ +++ L W+ EF +G + AD++
Sbjct: 178 FYKVPFQDALDLVRTRKVYLKEGYAYIPQSEIVAIVLNDFRTRLSKALALTARSLPAVHSDERLQPLLNHLSHS---------YFGQDYSGQKNVGKISLEQIDSLAGKSFPLCMRQLHKALRENHHLRYGGRMQYGLFLKGIGLSLEQALQFWKMEFIQGKVDADKF 336
BLAST of mRNA_E-siliculosus-1a_F_contig11058.720.1 vs. uniprot
Match: A0A3Q2DE49_CYPVA (DNA primase large subunit n=3 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2DE49_CYPVA) HSP 1 Score: 101 bits (252), Expect = 4.220e-19 Identity = 61/188 (32.45%), Postives = 102/188 (54.26%), Query Frame = 1
Query: 505 RKKLPQCSAVKGGGDI---GYLSCPFERVLPLVRSRRVLLRDGKALLSPDQLPEAVIQHFEGRLREGLAIAERGLPGVEADDRVAEVLRQVRRAVDSLVTGGGWHGRDAD-NRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKG-MPADEY 1053
++KL S + G + + PF+ L LVR+R+V L+DG A + + + V+ F RL + LA+ R LP V +D+R+ +L + + + G+D +++ I+ + ID LA K FPLCMR+ + LR HHL++ R+Q FL G+ +++ L WR EF +G + AD++
Sbjct: 158 KEKLLNSSYIVSGVTLENEDFYKVPFQDALDLVRARKVYLKDGYAFIPHNDIVTIVLNDFRTRLSKALALTARSLPAVHSDERLQPLLNHLSHS---------YLGQDYSIQKNVGKISLEQIDSLAGKSFPLCMRQLHQALRENHHLRHGGRMQYGLFLKGIGLSLEQALQFWRMEFIRGKVDADKF 336
BLAST of mRNA_E-siliculosus-1a_F_contig11058.720.1 vs. uniprot
Match: A0A8K1FD44_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD44_PYTOL) HSP 1 Score: 100 bits (248), Expect = 7.890e-19 Identity = 62/174 (35.63%), Postives = 87/174 (50.00%), Query Frame = 1
Query: 544 GDIGYLSCPFERVLPLVRSRRVLLRDGKALLSPDQLPEAVIQHFEGRLREGLAIAERGLPGVEAD-DRVAEVLRQVRRAVDSLVTGGGWHGRDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKGMPADEYARK 1062
G Y PF LV R VLL +G A ++ + L E + HF+ LR L R LP +AD +R++ L ++ SL ++ +T +NIDQ+AEKHFPLCM+ R R HHLKY R+Q FL G V E + +R+EF K +P + R+
Sbjct: 142 GSSRYFRVPFHEAARLVARRHVLLVNGFAWINENALKEIAVHHFKQILRAQLTALRRSLPAKKADMERLSPTLDKLLAESQSLHPARSI----LQPKNQLRVTPENIDQVAEKHFPLCMKHLHRKFRANHHLKYDGRVQYRMFLKGLGFSVHESMMFFRDEFTKVLPQVRFDRE 311
BLAST of mRNA_E-siliculosus-1a_F_contig11058.720.1 vs. uniprot
Match: A0A662YH99_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YH99_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 9.160e-19 Identity = 60/166 (36.14%), Postives = 85/166 (51.20%), Query Frame = 1
Query: 568 PFERVLPLVRSRRVLLRDGKALLSPDQLPEAVIQHFEGRLREGLAIAERGLPGVEAD-DRVAEVLRQVRRAVDSLVTGGGWHGRDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKGMPADEYARK 1062
PF V LVR RRV++R G L+ ++ A + HF+ L++ L + +P + + DR+ VL SLV G R +A IDQ+AEKHFPLCM++ LR HHLKY R+Q FL G V E L +R EF K +P ++ ++
Sbjct: 95 PFHEVSALVRQRRVVVRKGCCLIPSHEMDYAALHHFKRSLKQQLGDLQCAIPALGPELDRLTPVLDGFLAKAHSLVGSSGSRSRTRPRLEVA-----GIDQVAEKHFPLCMKQLHHKLRENHHLKYDGRVQYRLFLKGVGFSVYETLQFFRTEFTKKIPPAKFEKE 255
BLAST of mRNA_E-siliculosus-1a_F_contig11058.720.1 vs. uniprot
Match: A0A0S7IPF4_9TELE (DNA primase large subunit (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7IPF4_9TELE) HSP 1 Score: 98.2 bits (243), Expect = 1.170e-18 Identity = 56/164 (34.15%), Postives = 94/164 (57.32%), Query Frame = 1
Query: 568 PFERVLPLVRSRRVLLRDGKALLSPDQLPEAVIQHFEGRLREGLAIAERGLPGVEADDRVAEVLRQVRRAVDSLVTGGGWHGRDAD-NRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKG-MPADEY 1053
PF+ L LVR+R+V L++G A + ++ V+ F RL + LA+ R LP V +D+R+ +L + + + G+D +++ I+ + ID LA K FPLCMR+ + LR +HHL++ R+Q FL G+ +++ L WR EF +G + AD++
Sbjct: 19 PFQDALDLVRTRKVYLKEGYAYIPQYEIVTIVLNDFRTRLSKALALTARTLPAVHSDERLQPLLNHLSHS---------YLGQDYSVQKNVGKISLEQIDSLAGKSFPLCMRQLHQALRDQHHLRHGGRMQYGLFLKGIGLSLEQALQFWRMEFTRGKVEADKF 173 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11058.720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11058.720.1 >prot_E-siliculosus-1a_F_contig11058.720.1 ID=prot_E-siliculosus-1a_F_contig11058.720.1|Name=mRNA_E-siliculosus-1a_F_contig11058.720.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=84bp MAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGback to top mRNA from alignment at E-siliculosus-1a_F_contig11058:1..2122+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11058.720.1 ID=mRNA_E-siliculosus-1a_F_contig11058.720.1|Name=mRNA_E-siliculosus-1a_F_contig11058.720.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2122bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11058:1..2122+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11058:1..2122+ >mRNA_E-siliculosus-1a_F_contig11058.720.1 ID=mRNA_E-siliculosus-1a_F_contig11058.720.1|Name=mRNA_E-siliculosus-1a_F_contig11058.720.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=504bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11058:1..2122+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |