mRNA_E-siliculosus-1a_F_contig11037.710.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A6H5KVA0_9PHAE (Formate--tetrahydrofolate ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVA0_9PHAE) HSP 1 Score: 154 bits (390), Expect = 1.710e-42 Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 3 Query: 3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLP RPGFYDVDIDFGTGRVVGL Sbjct: 570 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPTRPGFYDVDIDFGTGRVVGL 644
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: W7TK34_9STRA (Formate-tetrahydrofolate ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK34_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.970e-33 Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 3 Query: 3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227 LP+CVAKTQYSLS D +AKG P+G V VR++RA VGAGF+Y L GDI TIPGLP RPGFYDVDIDF TGR+VGL Sbjct: 28 LPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGL 102
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A4Q5Y295_9DELT (Formate--tetrahydrofolate ligase n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5Y295_9DELT) HSP 1 Score: 122 bits (305), Expect = 2.440e-33 Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 3 Query: 3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227 LP+C+AKTQYSLSTD S KG P G +V VRDVRA+VGAG++Y +CGDI TIPGLP RPGFYDVD+D TGRVVGL Sbjct: 121 LPVCMAKTQYSLSTDASKKGVPRGFSVTVRDVRAAVGAGYIYPICGDIMTIPGLPTRPGFYDVDVDLDTGRVVGL 195
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A8J2SYL7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYL7_9STRA) HSP 1 Score: 126 bits (316), Expect = 4.660e-32 Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 3 Query: 3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227 LPICVAKTQYSLSTDPS KGAPSGHTV VR+VRA+VGAGF+YLLCGDI T+PGLP RPGF D+D+D RV+GL Sbjct: 935 LPICVAKTQYSLSTDPSKKGAPSGHTVNVREVRAAVGAGFLYLLCGDIMTVPGLPTRPGFVDIDLDTVNDRVIGL 1009
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A4D9CUJ7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUJ7_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.610e-31 Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 3 Query: 3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227 LP+CVAKTQYSLS D +AKG P+G V VR++RA VGAGF+Y L GDI TIPGLP RPGFYDVDIDF TGR+VGL Sbjct: 192 LPMCVAKTQYSLSCDAAAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGL 266
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A6U0RF96_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0RF96_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.970e-31 Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 3 Query: 3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227 LPIC+AKTQYS S DPSAKG P+G + VR++RA VGAGF+Y +CGDI TIPGLP RPGFYDVDID TG V GL Sbjct: 116 LPICIAKTQYSFSCDPSAKGVPTGFRISVREIRACVGAGFLYPICGDIMTIPGLPTRPGFYDVDIDVETGEVKGL 190
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A8K1FBV6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBV6_PYTOL) HSP 1 Score: 124 bits (310), Expect = 2.410e-31 Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 3 Query: 3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227 LP+C AKT SLSTDP+AKG P+G TV VRD+RASVGAGFVYLLCGD+ T+PGLP RPGFYDVD+D TG+V+GL Sbjct: 563 LPVCCAKTHLSLSTDPTAKGVPTGFTVTVRDIRASVGAGFVYLLCGDMMTVPGLPTRPGFYDVDLDVETGKVIGL 637
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A6U4C1F9_9STRA (Formate--tetrahydrofolate ligase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4C1F9_9STRA) HSP 1 Score: 123 bits (309), Expect = 3.400e-31 Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 3 Query: 3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227 LPIC+AKTQYSLS D + KG P+ TV VRDVRASVGAGF+Y +CGDI TIPGLP RPGFYDVD+DF TGRVVGL Sbjct: 573 LPICIAKTQYSLSCDAALKGVPTDFTVTVRDVRASVGAGFLYFICGDIMTIPGLPTRPGFYDVDLDFETGRVVGL 647
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: F0YQT5_AURAN (Uncharacterized protein (Fragment) n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQT5_AURAN) HSP 1 Score: 114 bits (284), Expect = 4.520e-31 Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 3 Query: 3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227 LP+C+AKTQYSLSTD KG P GHTV VR+VRA+ GAGF+Y+LCGDI T+PGLP RPGF D+D D RV+GL Sbjct: 46 LPVCIAKTQYSLSTDAKLKGVPEGHTVNVREVRAAAGAGFLYMLCGDIMTVPGLPTRPGFVDIDYDHEKDRVLGL 120
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A2D4C5S4_PYTIN (Formate--tetrahydrofolate ligase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5S4_PYTIN) HSP 1 Score: 122 bits (307), Expect = 5.050e-31 Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 3 Query: 3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227 LP+C AKT SLSTDP AKG P+G TV VRD+RASVGAGFVYLLCGD+ T+PGLP RPGFYDVD+D TG+V+GL Sbjct: 508 LPVCCAKTHLSLSTDPXAKGVPTGFTVTVRDIRASVGAGFVYLLCGDMMTVPGLPTRPGFYDVDLDTETGKVIGL 582 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11037.710.1 >prot_E-siliculosus-1a_F_contig11037.710.1 ID=prot_E-siliculosus-1a_F_contig11037.710.1|Name=mRNA_E-siliculosus-1a_F_contig11037.710.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=76bp SCRFAWRRRSIHFPRTRRLRGPRQDIRFSYAMCGLPWGQGSCTFFAATLTback to top mRNA from alignment at E-siliculosus-1a_F_contig11037:839..1696- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11037.710.1 ID=mRNA_E-siliculosus-1a_F_contig11037.710.1|Name=mRNA_E-siliculosus-1a_F_contig11037.710.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=858bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11037:839..1696- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11037:839..1696- >mRNA_E-siliculosus-1a_F_contig11037.710.1 ID=mRNA_E-siliculosus-1a_F_contig11037.710.1|Name=mRNA_E-siliculosus-1a_F_contig11037.710.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11037:839..1696- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |