mRNA_E-siliculosus-1a_F_contig1103.707.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1103.707.1 vs. uniprot
Match: D7FRT0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRT0_ECTSI) HSP 1 Score: 597 bits (1540), Expect = 5.730e-209 Identity = 303/308 (98.38%), Postives = 305/308 (99.03%), Query Frame = 1 Query: 43 MWLLLVCLGSIGVEAFTTSSSLGLRASSASFAATGLPAGAGASRSTSWRNSKIRPRMGTEFEDENAKEKLKAMLNRQFGIGDTSRPDEWCKPTDVLQTGTVLLADPKAFTTRSHPKMLDKFGLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDLGDDFTSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNMASASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFYRR 966
MWLLLVC GSIGVEAFTTSSSLGLRASSASFAATGLPAGA ASRSTSWRN+KIRPRMGTEFEDENAKEKLKAMLNRQFGIGDTSRPDEWCKPTDVLQTGTVLLADPKAFTTRSHPKMLDKFGLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDLG+DFTSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNM SASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFYRR
Sbjct: 1 MWLLLVCFGSIGVEAFTTSSSLGLRASSASFAATGLPAGAVASRSTSWRNNKIRPRMGTEFEDENAKEKLKAMLNRQFGIGDTSRPDEWCKPTDVLQTGTVLLADPKAFTTRSHPKMLDKFGLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDLGNDFTSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNMESASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFYRR 308
BLAST of mRNA_E-siliculosus-1a_F_contig1103.707.1 vs. uniprot
Match: A0A835YZZ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ3_9STRA) HSP 1 Score: 263 bits (671), Expect = 2.160e-78 Identity = 141/243 (58.02%), Postives = 173/243 (71.19%), Query Frame = 1 Query: 208 RMGTEFEDENAKEKLKAMLNRQFGIG-DTSRPDEWCKPTDVLQTGTVLLADPKAFTTRSHPKMLDKFGLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDLGDDFTSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNMASASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGE 933
RMG E+ DE A+ KL+ MLN+QFG G T + DEW KP D + GTVLLADP+ F + K L +FGL +P+P + I PDR ADLLP +LLV +IG+MLNRRTG+LMGDLG+D ++FMIQP++LGGT G ++FIHTYPEV A+ ++E+ GL+F G+ SA V +G GSGFNFRFF Q T W GEL AEV+ G W V A KM+LLRVRDRKGPD AKPMW DL MAG E
Sbjct: 66 RMG-EYMDEEAQRKLRDMLNKQFGKGAGTVKADEWAKPADAIGVGTVLLADPRPFF-KGDAKTLQRFGLPEPIP--QVISPDRQADLLPCILLVQHGPRGSIGVMLNRRTGMLMGDLGEDMSAFMIQPIFLGGTLGSQSLSFIHTYPEVAQAEQVTED-GLFFGGDFKSAVHCVREGIGSGFNFRFFVQYTQWGPGELGAEVNAGRWHAVSAGKMSLLRVRDRKGPDTAKPMWTDLLTMAGEE 303
BLAST of mRNA_E-siliculosus-1a_F_contig1103.707.1 vs. uniprot
Match: A0A4D9D9B7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9B7_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.160e-43 Identity = 90/227 (39.65%), Postives = 133/227 (58.59%), Query Frame = 1 Query: 304 EWCKPTDVLQTGTVLLADPKAFTTRSHPKMLDKF--------GLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDLGDDFTSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNMASASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFY 960
+W + L+ G VL+A+P F + +F GL G Q D A++LPVVLL+G +G T GL+LNRRTG L+GDL D + F IQP+ LGGT +GI +HTYPE+E A ++ + GL+F GN +A ++V + S F+FF Q T+W GEL+ E++ +W P SK +L+ R R+GP +AKP+W ++ ++ GG +L +E Y
Sbjct: 88 DWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGESQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMVHTYPELERATQVTND-GLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIEDKVWYPAQVSKDVILKNRGREGPKMAKPLWTEVLELMGGSFLEIKKELY 313
BLAST of mRNA_E-siliculosus-1a_F_contig1103.707.1 vs. uniprot
Match: A0A7S2B470_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B470_9STRA) HSP 1 Score: 153 bits (387), Expect = 1.220e-39 Identity = 78/169 (46.15%), Postives = 108/169 (63.91%), Query Frame = 1 Query: 457 ADLLPVVLLV-GIDAGRTIGLMLNRRTGVLMGDLGDDFTSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNMASASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFY 960
A+L+PV+++ G ++ +GLMLNRRTG LMGDL D + FMIQPL GGTQ ++F+H YPE+ G+ I E+ GLY+SGN A +V G S F FRFF Q W+ GELE ++ + W P SK +L++R+R+G KP+W D+ +AGG Y E+FY
Sbjct: 1 ANLMPVIIVTSGSESEGYMGLMLNRRTGYLMGDLEQDVSGFMIQPLNFGGTQPPADLSFLHPYPEIGGSTQIGED-GLYYSGNFKDAQMLVEKGTCSQFKFRFFIQCVRWEKGELEKQMAKNTWCPAQVSKDVILKIREREGSRRPKPLWTDVMDLAGGNYGELSEDFY 168
BLAST of mRNA_E-siliculosus-1a_F_contig1103.707.1 vs. uniprot
Match: A0A7S2DJT8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJT8_9STRA) HSP 1 Score: 158 bits (400), Expect = 3.550e-39 Identity = 91/240 (37.92%), Postives = 134/240 (55.83%), Query Frame = 1 Query: 298 PDEWCKPTDV---LQTGTVLLADPKAFTTRSHPK-MLDKFGLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDLGD-DFTSFMIQPLWLGGTQGE-NGITFIHTYPEVEGAQAISE-------------EEGLYFSGNMASASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFY 960
P W K + L+ G V+L +PK F P+ ML +FGL QP+P +E + P+ A+LLPV+LLV D G GL+LNRRTG LMG+L D D + F +QPL LGG E + +++IH Y E+ G + +S E L+ GN A +V + GF F+FF T W+ G+LE ++ + P S LL++R+R+G A P+W ++ ++AGG Y ++FY
Sbjct: 121 PSYWSKTVAIEGALRPGLVVLGNPKLFCNEEAPEEMLMQFGLRQPVPNAEDLDPNSRANLLPVILLVETDNGPAKGLLLNRRTGYLMGELKDKDVSGFRVQPLNLGGMADEASDLSYIHPYAELSGCEGLSSDYDNDNAGDRKEGESSLFLGGNFKEAQDMVQEEIFDGFKFKFFGGCTRWEPGQLEQQLKDQVLLPAECSADLLLKIREREGDKRATPLWTEIMELAGGAYADICKDFY 360
BLAST of mRNA_E-siliculosus-1a_F_contig1103.707.1 vs. uniprot
Match: A0A7S1UHR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHR3_9STRA) HSP 1 Score: 155 bits (391), Expect = 1.660e-38 Identity = 84/199 (42.21%), Postives = 119/199 (59.80%), Query Frame = 1 Query: 289 TSRPDEWCKPTDVLQTGTVLLADPKAFTTRSHPKMLDKFGLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDLGDD--FTSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNMASASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKG 879
T EW +P G +L+A+P AF P K+G+ PG +PPDR A+LLPVV+L ++ G +LNRRTG++MGDL + F +QP+W GG GE ++ +HTYP+VEGA+ IS+ GL+ G+ +A VT+G SG+NF+FF Q+ W AG LE EV RG W P S ++++R+R G
Sbjct: 114 TPEATEWVQPCGGPVGGGLLIANPDAFF--EDPMFQGKYGVQGFAPGD--LPPDRLAELLPVVMLYMHGDLQSAGFVLNRRTGMMMGDLAEQHGLRCFQVQPIWYGGPHGEGQLSMVHTYPQVEGARKISD--GLWLGGSFEAAQDEVTEGIASGWNFKFFLQVDAWGAGSLEDEVRRGWWLPARCSPQVVMKIRERGG 306
BLAST of mRNA_E-siliculosus-1a_F_contig1103.707.1 vs. uniprot
Match: A0A1E7FXR6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXR6_9STRA) HSP 1 Score: 154 bits (390), Expect = 3.720e-38 Identity = 96/271 (35.42%), Postives = 136/271 (50.18%), Query Frame = 1 Query: 301 DEWCKPTDVLQTGTVLLADPKAF---------------------------TTRSHPKMLDKFGLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDL--------GDD----------FTSFMIQPLWLGGTQGEN-GITFIHTYPEVEGAQAISEEEGLYFSGNMASASKVVTDGPG-----SGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFY 960
++W KP + ++ GTVL+A+P+ F +++ P +L KFGL QP P + DR ADLLPVV++V D G+ G++LNRRTG L+GDL DD F IQPLW GG + G+ +H P V AQ I+E+ G+Y+ G+ A + D P SGF+F+FF Q T+W +G L+ EVD +W S L + RDR G AKP+W ++ + G EY + FY
Sbjct: 58 EDWAKPMEGIRPGTVLIANPRKFCEDGDFGDSGSDDNESTGVKDFLKFGWSSKPDPSLLAKFGLTQPPP--RHLGADRQADLLPVVIVVSTDGGQIQGVLLNRRTGYLLGDLEQPAEDGSSDDNNDNNDMAPILEKFCIQPLWFGGIDSLSVGLDMLHLCPTVNDAQQITED-GMYWGGDPTQAQDAMED-PSLDRIYSGFDFKFFVQSTIWSSGVLQGEVDDNIWFQANVSNNVLFKSRDRMGTKKAKPLWTEILDLMGDEYSDITKRFY 324
BLAST of mRNA_E-siliculosus-1a_F_contig1103.707.1 vs. uniprot
Match: A0A7S4AE40_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AE40_9STRA) HSP 1 Score: 154 bits (389), Expect = 5.870e-37 Identity = 101/280 (36.07%), Postives = 140/280 (50.00%), Query Frame = 1 Query: 280 IGDTS-RPDEWCKPTDVLQTGTVLLADPKAFT-----------------------------TRSHPKMLDKFGLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDL------------GDDFT----SFMIQPLWLGGTQGEN-GITFIHTYPEVEGAQAISEEEGLYFSGNMASASKVVTDGPG-----SGFNFRFFAQITVWK-AGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFY 960
+ DT P++W K T ++ GTVL+A+P F T P +L KFGL QP P + DR ADLLPVV++VG + G+ G++LNRRTG L+GDL +D F IQPLW GG + G+ +H P V A I+E+ +Y+ G+ A A + D P SGF+F+FF Q T+W G L++EVD +W P S+ L + RDR G AKP+WA++ + G +Y ME FY
Sbjct: 164 VADTDVAPEDWAKETSEIRPGTVLVANPSKFCDEGDYGRMSGDDNEPSGGGKDFFAAALGRTGPAPSLLAKFGLTQPPP--RHLGADRQADLLPVVIVVGTEGGQVQGVLLNRRTGYLLGDLEQPSADGSSGENNEDMAPILEKFCIQPLWFGGIDSLSVGLDMLHLCPTVRDATKITEDN-VYWGGDPAQAQDAMED-PSLDRMYSGFDFKFFVQSTIWSNVGTLQSEVDDKIWFPAKVSQKILFKSRDRMGTKKAKPLWAEIMGLMGDKYSVVMENFY 439
BLAST of mRNA_E-siliculosus-1a_F_contig1103.707.1 vs. uniprot
Match: B7G772_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G772_PHATC) HSP 1 Score: 149 bits (377), Expect = 8.850e-36 Identity = 96/249 (38.55%), Postives = 133/249 (53.41%), Query Frame = 1 Query: 304 EWCKPTDVLQTGTVLLADPKAFTT--------RSHPKMLDKFGLAQPLPGSEQIPPDRAADLLPVVLLVGIDAG-RTIGLMLNRRTGVLMGDLGDDFTS----------------FMIQPLWLGGTQGEN-GITFIHTYPEVEGAQAISEEEGLYFSGNMASASKV---VTDGPGSGFNFRFFAQITVWKAG-ELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFY 960
+W +P +Q G VLLA+P+ F + PK+L KFGL P P + PDR ADLLPV+++V G R ++LNRRTG L+GDL T+ F IQPLW GG + G+ +H P V A+ +S+E GLY+ G+ A A VTD +GF+F+FF Q TVW + EL+ E+D G W SK L + RDR G AKP+W ++ ++ GG+Y + Y
Sbjct: 141 DWSEPVSSIQKGMVLLANPEQFCSDFGGGRRKMPSPKLLAKFGLTLPPPAD--LGPDRRADLLPVLIVVECGEGSRVRAVLLNRRTGYLLGDLEQADTNLGSTSSKKAPTPVLEKFCIQPLWFGGVDNVSAGLDMLHQCPTVPDAEPLSDE-GLYWGGDPALAQDAMDEVTDKVLTGFDFKFFVQSTVWGSSKELQKEIDNGTWFTARVSKEVLFKSRDRMGTRRAKPLWTEVMELLGGKYKDTRDMLY 386
BLAST of mRNA_E-siliculosus-1a_F_contig1103.707.1 vs. uniprot
Match: A0A448ZN63_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZN63_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.620e-34 Identity = 97/271 (35.79%), Postives = 135/271 (49.82%), Query Frame = 1 Query: 298 PDEWCKPTDVLQTGTVLLADPKAFT-----------------------------TRSHPKMLDKFGLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDL-------GDD-------FTSFMIQPLWLGGTQGEN-GITFIHTYPEVEGAQAISEEEGLYFSGNMASASKVVTDGPG-----SGFNFRFFAQITVWK-AGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFY 960
P +W K T + GTVL+A+P F T P +L KFGL QP P + DR ADLLPVV++V + G+ G++LNRRTG L+GDL GD F IQPLW GG + G+ +H P V+ A I+E+ +Y+ G+ A A + D P SGF+F+FF Q T+W AG L++EVD +W P S+ + + RDR G A+P+W ++ + G EY M+ FY
Sbjct: 160 PGDWAKATTEIGPGTVLVANPSKFCDEGDYGRMSTDANEPSGGGKDFFASALGRTGPAPSLLAKFGLTQPPP--RHLGADRQADLLPVVVVVSTEGGQVQGVLLNRRTGYLLGDLEQPSXDXGDSNEDMAPILEKFCIQPLWFGGIDSLSVGLDMLHLCPTVKDATKITEDN-VYWGGDPAQAQDAMED-PSLDRAYSGFDFKFFVQSTIWSNAGSLQSEVDDKIWFPAKVSQNIIFKSRDRMGTKKAQPLWTEIMGLMGDEYGEIMKNFY 426 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1103.707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1103.707.1 >prot_E-siliculosus-1a_F_contig1103.707.1 ID=prot_E-siliculosus-1a_F_contig1103.707.1|Name=mRNA_E-siliculosus-1a_F_contig1103.707.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=309bp MWLLLVCLGSIGVEAFTTSSSLGLRASSASFAATGLPAGAGASRSTSWRNback to top mRNA from alignment at E-siliculosus-1a_F_contig1103:1988..9049+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1103.707.1 ID=mRNA_E-siliculosus-1a_F_contig1103.707.1|Name=mRNA_E-siliculosus-1a_F_contig1103.707.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7062bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1103:1988..9049+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1103:1988..9049+ >mRNA_E-siliculosus-1a_F_contig1103.707.1 ID=mRNA_E-siliculosus-1a_F_contig1103.707.1|Name=mRNA_E-siliculosus-1a_F_contig1103.707.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1103:1988..9049+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |