Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1102.704.1 vs. uniprot
Match: D8LPY5_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY5_ECTSI) HSP 1 Score: 202 bits (514), Expect = 9.630e-61 Identity = 126/128 (98.44%), Postives = 126/128 (98.44%), Query Frame = 3 Query: 234 MGRQGWYNPSTGQTTYQMYGAYNAANPMMAPQAQVPVQPQVYQQPPMQVPMGYMTQPQITAPMGQIPQMVPQXXXXXXXXXXXXXXXXXXXXXX-QQFAAPPGWQPMFDRSGRRYFYNPSTGQSVYPL 614
MGR GWYNPSTGQTTYQMYGAYNAANPMMAPQAQVPVQPQVYQQPPMQVPMGYMTQPQITAPMGQIPQMVPQXXXXXXXXXXXXXXXXXXXXXX QQFAAPPGWQPMFDRSGRRYFYNPSTGQSVYPL
Sbjct: 1 MGRHGWYNPSTGQTTYQMYGAYNAANPMMAPQAQVPVQPQVYQQPPMQVPMGYMTQPQITAPMGQIPQMVPQXXXXXXXXXXXXXXXXXXXXXXXQQFAAPPGWQPMFDRSGRRYFYNPSTGQSVYPL 128
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 429 |
| Model size | 1280 |
| Exons | 4 |
| Ec32 ortholog | Ec-15_001650.1 |
| Ec32 ortholog description | WW domain |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1102.704.1 >prot_E-siliculosus-1a_F_contig1102.704.1 ID=prot_E-siliculosus-1a_F_contig1102.704.1|Name=mRNA_E-siliculosus-1a_F_contig1102.704.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=143bp
MAGVYTGQWIPFSDQMGRQGWYNPSTGQTTYQMYGAYNAANPMMAPQAQV
PVQPQVYQQPPMQVPMGYMTQPQITAPMGQIPQMVPQIPQMPQIMPQMPQ
QQQPRQPQQQQFAAPPGWQPMFDRSGRRYFYNPSTGQSVYPL* back to topmRNA from alignment at E-siliculosus-1a_F_contig1102:14778..21013- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1102.704.1 ID=mRNA_E-siliculosus-1a_F_contig1102.704.1|Name=mRNA_E-siliculosus-1a_F_contig1102.704.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6236bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1102:14778..21013- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGGGAAAGGAGCGGAGAGCGAGAGATAGACAAAGAGAGACAACCAGAG
GGCAACCGCTAATACGCAACCCCCGCCTCGGCGCCAACAAGGAAGAGAGA
GCGAGGCGCCTAGGTAACCCGAGGAGGACGCAGGGCGCGCGGGGCAGCGC
GCTGGTGATTTAAGCCGAGAACTAAGGTATGCACGAACGGGCGATATTTT
CTCCTTTTTTGTTTACCAGCAGCTGAGGGTGGTGGTGACAAGAAATATGG
CAGCACACAGCAGCAGGCGGGCAGCACCATAGCAGCAATGATCATGGGAA
GAGGGCCGGCTTCGATCCCAGGGGCCAAGCGACCGAGCTAGAGCGCGCAT
GCACGCAGGCCTTGCTGGGGCGACCCTCCTTGTGTTTATTTTCCCCCGCC
CCGACGCATGAAAAACACTTTCACCAACACCAAACCCCAAACGACCCACT
TTCCCCTTTCCCGGGCAACAACGGCAGATGACGCGGGTACATTTTTACCC
AATCCATCGATGCCAACAACGCCCCTTACGCGTGTACGCTCTTCCTCCTC
TTGCTCTTATGCGTGGCTGGGACGCCGTTGTCTTTCGCGCAGAAGGCCCT
CGCCAGGTTTTGGTTTCTTGCTCGTGGACACACACGCATGGGCTTTTGGG
TTTGGCGCGCTCTCTCTTTCGTTGTTCCCTCTCTCTCTCTACCCTATATA
CCCCGAAGAATTGTATCTGAAGCCTGCTGCTGCTGTGTCCAGTCTCTTGT
TATGTACTACACAGATACATGCCCTGCTGCCGTTACGCCCCACAGACATG
GGAGCCGTTCGGCACGGCTGCTTGATCCTAAAGCATGCCACGCGTGCAAG
CTCTTTGCGTTTTGTCCCCACCGACCCAGCGGTACAGCAGACCCGAAGCA
TCCTTCGCCGTAAGTCTAAACACACCTCTACAGCAGCAGAAGTACCCCGA
TCTACAATTGCAAGTGATTTGCTGTGCTGAACAGAACGAGTTGTAATCAA
CAACACGGAAGGAGCGGATGGGACGCTGTTTTTTTTTCCGTTGCGCGTCC
TCCGTGTCCTGTACACATGTCTTGCTTCTGTAGAATGTGTCCAACTGGTG
CCCACACACCCTCTTTTTGCAGCAACAATGGTGGTTCGCATAGCACAACG
ACCGTAGCGCGCTGCTGTTGGAAGCACACGGCCATCGTAAATATTGCAAG
TTTCAGACCATGTCTACAATAAACCCTGGAATGTGTTTTCGGTTGCGGCT
GCTGCTGCTGCTGCTGCTGCTGTGTAAAATTGATGTGCTGCTGTATGCCA
CGCGTGCGCGCAAAGACTTTTGTAATTGCTACAGCAGTAGTTCGGAGGTG
ACCGACCCGTGGAAGACATTATTGCTATAGAATTTGTGGTGTTTTCACGG
GGTGGTTACAGCTTCCACCCGGCCCACGTGTGCCCAAAGATACGCACATC
ACCCCCACAGCCTCCGGTACTCCTGTAGCAGCACTCTACCGCTCTCAACG
TACTCAGCCCCTGTACTTTTGAAGTCGAAGCTGCTGGGGGTGGGAAGCGG
TGGTCTCCAGGTCGGAACATGGCACACCCAACTTTTTCTCCTTCACGTCT
ACGTATGCAGCGCACCTATGGGCACGTGTCCGTCCAGTGCACGCCAGCCA
ATGATATGTGTATGTGTATATATGCAAGCATATGTACTGCTGCTGTACTG
CTGTACTGTAGCACCTTGTATCCACGGATGGTGCGCTGACCTCAGATCAA
CCAGTGTTGTTTGTTGGGGTTGCAGTGTTCTCAGGTTTGAGACTTCAAGC
AGAGGGTACGTACATATGCATGAATAGTAACAACGTGAGATATTAGAACA
CCCCCTTTTTTCACCACCACGTATGTAAGTGAAGTAGGAATGGCGACGCG
GTCTTTCTTTTCTGTTTTTCGGGAAACCAACACGAACTCTCAGCGAGAGC
TGGCCTGTACGCAGATGTGTTTTCTTTTTTTCTTGTTGGTTCGTTGGAGG
TTCGGAGTGGGCTCTTCGGTTCGAAGCCATGCCAGCTGTGTGAGCTCTTG
AGCCGGAGGAACGTTACCGCCAGCCACCTGTGGGCTGGTCTGCTCCCTGT
TGCTCGTAAAATATTATTTTCGTCTTGCACCGTCCATCACCCCTTGAGGA
CACCGCGTGATGTCGTGAGCCCACTCCGGAAGGGATCCCGTCCGTACTTC
TAGAGTCTAGCACACAGGTGGCTAAAGTTGTGACGTTTCGGATTCTTGAG
CCCCGACTACTGGTCTACAGTCCACGGTTGTAGCCACTCCCTCCTTTGAC
CCATCAACTTCGTAGATGGCGTCGCGTCCCCGTATGCGTGCGCCAGTGTG
TTTGAAATTTGTATCGCCCTGTGTAACTTTCGAGCATTATTTACGATGGT
GGGGGCCAATGTACCACAACATGTGCGTAGTTCCGCGGGGATGGGGGATC
AATATGGGACAGGTAACCTTGCCACGTTAATTTTTTCTTCGCCGAACCCC
GAAAACCCGGTGGTGCCATTTTTCTCGAGTGGTGACACTTTTTGTTGTTG
TTGGTTGCGAGGGCGAGAGGAAAGGCTTGCATACCCCGCTGTGCATTTTC
GATTTTAGGCCACGGGGTGCGCCACAGAAGTACAAAACACACAACTATTT
TACTTGAAAAAGGTGGGAGCTCGACATGTTCTACCGGGAAACAAGCAACG
TTTTCGGTTCGTTAAACGCCTAGCGGTACTGACGGGATCCAATAATACGT
GCTCTGGAGCCCGTGCAACGCGAACCGTTTTGGACAGGCCGGCACAAAAG
TCGCACATAAAAAAAAAGAAAAACTCGAAACGAGACGGGTTGGAAGTTGA
TGGGTCAGGTCGAGCGAGAGAGCCTTTGGTGTTGTTCGCGTCGCAGCATA
TACGCTTAGCATTGCTTGCTTCTCCCTCTCTCTCCCTCTGTCCCTCTCTC
AACCCCCCCCCCCGCCCCCATCGCTCGTGGTGATGTCTTGCTTGTCGTCG
TTTGTCTGTTTAGGCGAACGTTATCATGGCGGGGGTCTACACCGGCCAGT
GGATCCCCTTTTCGGACCAGATGGGGCGACAGGGCTGGTGAGTCAAATGC
TGCTACTGCTGTTGCTGTTGAGGTTGTCGTTGTTCTTGTTGTTGCTGCTG
CCGTTGTTGATGGCGGTGGTGACCTTCTGCTGCTGGTGCTGCTGCTGCTG
CTGTGGTCGTTTTGGTTGCTGCCGTTGTTGATGACTGTGGTGATGTGATG
GTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCTTGGGGTTGT
TATTATTGCTGCCGATGTTGATGACGGTGGTGATATGGTGGTTGGCGATG
ATGGTGGTGGTGGTGCTGCTTCTGTCGTGGTGGTTGATCTTGCCGTTATT
TGTAGCCAATGCTATTGATTTTGCCGTTGTTGTCTCCCTTCTTTGTGCCT
AGAGCGGACTGATCGGGTTGGCTTCTCCAATTGTCGTATCTGTAGCGGTC
ATGCGGTCGGCAAGATGATCGATGTGGTCACGCGCCAACTATTCAGCTAA
AGATGCACACCACGCACACAACGCGCCAACTATTCAAGCTAAAGATGCAC
ACCACGAAACGTGTGCGTTGAATATGTTGCGCTCATCCTACGAAGCCGTC
ACCTCTACTTCTAGCACCACCTCCTGATCATTTTCTCTTACCAAGCTTTC
CTGTTGGGGTTGTGACGAACTTGGCAACTTCTACTCAGTTGCTGACAGTG
AATGTATGATGTGCAGTACCGTTGGTGCAATACAACCACCGACCACGAGC
ACCAGAATGATATCACTCCACCTTATGCGTGTGCTAGCATGGGTCAGTCA
GTTCCACGTGTCGCTGGATACTAAAGTCGCGTGACACGACCGCGATGCCC
AGCATGGACCCTTGTCAGAGTGGACGCACGTGTGATGTTGTGACAAAGTC
AAGACACAAGCTCTACACTTAGCTTAGCTGACTAGGGCAACCTCGATACC
CATGGGGCGGGCTCGCCCCAGGGACCTATTCGAGGAACGATCCAGAAACC
CTTCGGCGCACAACAGTCGTGGCCCGTTGTCCAGACACCGGGGACGGAAC
GACTAGCCCCTTCGCGATATCAGAGGCACCCAACGGCAACTTTGTCGAGG
AACCCTCGGTCCGGTTCATCTCCGGAGGATGCGTTTCTCTTTTGGTGGAA
TCGCAGCAGCTGTGCCCGGAACTACGACCGATTTCGGGGATCCGTTATTG
CTTGCAGGTCACGCTTGCAGGAGTAGCAGTGACTGGCATGGTTTTGCATA
ACTATGATCGTCTTGCTTGATTTTTTTTTGTCACCGCACAAGCTGTAATT
GTCCATACTGCCAGGAAGCGTGTGGTGTGTGTGTGCTGATTGGCGGAAGC
GCCCCTGTTCGGTCTACTCGCCGTTCTGGATCAATCTTGTCAGGTACAAC
CCGAGCACGGGGCAAACGACGTACCAGATGTACGGCGCGTATAACGCCGC
CAACCCCATGATGGCCCCGCAGGCGCAGGTGCCGGTGCAGCCGCAAGTGT
ACCAGCAGCCGCCGATGCAGGTGTGTGTGTGTGTGTGTTTCTTATTAGCA
TCGACCCCGCTGACCGGCTGACCTTTGTGTGTGTAACCCTGGTTGAAGTA
GTAGGTAATCGCCCGTCTCCGTCCCACGAGTTTTTGGGGCAATAGACAGC
GGAACGCGTCCGACACAGCAGTTTCGGCTACAATCGAATGACGCTGACAG
GTATGAGGGTCGGGGAGAAATTGCAGTCTCTTTTTTGTAAAACTTTCGTG
CCTAGGACGTGCTCCCCCCTATATATGTGTATTGTTTTCGTCCTATTCAT
TTTGGCGACATTCCCCCCATTTTTCGTGGTGAGACGTGTACAACACTCTT
CAGTGTATGTAGAGTACTACGAAGTACACTTTTCAGTGTATTTTTTTGTA
CAACTACAACCATACAGGGTCAAACAGGAGGAGGTAAACACCGGGGCTAG
TTTCTTTTATTTATTTTTTTTTCGTGCCCCACCTCCCTCCTGCGGTGCGT
GCTGAATTTTTTTTATCGCGAGAAGGGTCCAGCCGTCCTTTTCCCTCGTC
GACGGTGCTAACGCCGAAGTTTTGGTACTCACGAGAGTTTTTTCGGCTTC
TTTTTTTCGCTGTCACCCTCAATTTTGCAATTTCACCCCCATGGGGATTC
GAACTCACGATGTCTGCGACTAGCGGTTTAGAGGTTACCACGAGACCACC
GGGGCGACCGGCTATATACAGGAAAAATATTACCGACAACGAGAATACCG
CATTCCACCAAATGCCCCCTGTGTTCCTCTCAGGTTCCGATGGGCTACAT
GACCCAGCCGCAGATAACCGCGCCAATGGGACAGATCCCGCAGATGGTTC
CGCAGATTCCCCAGATGCCCCAGATAATGCCGCAGATGCCACAGCAGCAG
CAGCCGCGGCAGCCGCAGCAGCAGCAGTTTGCGGCTCCCCCGGGTTGGCA
GCCGATGTTCGACCGCTCCGGGCGGCGATACTTTTATAACCCGTCTACGG
GCCAGAGCGTCTACCCTCTCTAAAAGGCAGAAAAACCAGTTAGCTGCGAG
ACGAACAGGTTCTAGATCAGAGCCAATTTTTAAAGACGGGATCGGTTCCA
ACACGAAAGAGGAGGAAGCAACGCTTACGCGCCAGAGCATCTTACCGGCC
TTAAAATGCCAAGCAAGAGGCGGCAGCGGCGGCAGGGGCTGGATTGGCGT
TGTGCGGTGTTTGGCGACGGCGAGGGCCGTGCTGGCTGTGGGGGTCGGAG
CAGTAACTGCGCCGATTGCGGCATGCCTGATGGATTCGGACATGGCGAGG
CCGGAGGAAGGGAGAGCGGAATGGAGGTCGCGGTCGACAAGGGGATGAGG
GCGGTGACCGCAATAGTTGCGGTGGGACCGATTAATGGCGGCGTCGGGCG
TCTGCAACGACGACGACGGCGGCCTGGACAGCACAAGCGCTAGGGGGCAA
GGGAACGTCTGCCGCAGGAGGGGGGAGGGGGCGGGAGTAGCGTGGTTGCG
GCAGATGCGGCGATAGGGCTAAAAAGGTATTGGTGACTTTTTTAACAACA
CAAACAAGGGCGGCAGCAAAAGGATTTAGCTCTTTGGTTTGTCTTGAAAA
ACGAAGAAACTGTGCCGACTGTTGTTTTTTCTTTCTATGATTTTCTTTTT
GCTGCCGCTGGTGGGGCGTTGGCGTGCAGCACGAGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1102:14778..21013- >mRNA_E-siliculosus-1a_F_contig1102.704.1 ID=mRNA_E-siliculosus-1a_F_contig1102.704.1|Name=mRNA_E-siliculosus-1a_F_contig1102.704.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=858bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1102:14778..21013- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGGGGTCTACACCGGCCAGTGGATCCCCTTTTCGGACCAGATGGG
GCGACAGGGCTGATGGCGGGGGTCTACACCGGCCAGTGGATCCCCTTTTC
GGACCAGATGGGGCGACAGGGCTGGTACAACCCGAGCACGGGGCAAACGA
CGTACCAGATGTACGGCGCGTATAACGCCGCCAACCCCATGATGGCCCCG
CAGGCGCAGGTGCCGGTGCAGCCGCAAGTGTACCAGCAGCCGCCGATGCA
GGTACAACCCGAGCACGGGGCAAACGACGTACCAGATGTACGGCGCGTAT
AACGCCGCCAACCCCATGATGGCCCCGCAGGCGCAGGTGCCGGTGCAGCC
GCAAGTGTACCAGCAGCCGCCGATGCAGGTTCCGATGGGCTACATGACCC
AGCCGCAGATAACCGCGCCAATGGGACAGATCCCGCAGATGGTTCCGCAG
ATTCCCCAGATGCCCCAGATAATGCCGCAGATGCCACAGCAGCAGCAGCC
GCGGCAGCCGCAGCAGCAGCAGTTTGCGGCTCCCCCGGGTTGGCAGCCGA
TGTTCGACCGCTCCGGGCGGCGATACTTTTATAACCCGTCTACGGGCCAG
AGCGTCTACCCTCTCTAAGTTCCGATGGGCTACATGACCCAGCCGCAGAT
AACCGCGCCAATGGGACAGATCCCGCAGATGGTTCCGCAGATTCCCCAGA
TGCCCCAGATAATGCCGCAGATGCCACAGCAGCAGCAGCCGCGGCAGCCG
CAGCAGCAGCAGTTTGCGGCTCCCCCGGGTTGGCAGCCGATGTTCGACCG
CTCCGGGCGGCGATACTTTTATAACCCGTCTACGGGCCAGAGCGTCTACC
CTCTCTAA back to top
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