mRNA_E-siliculosus-1a_F_contig1101.700.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1101.700.1 vs. uniprot
Match: A0A6H5L518_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L518_9PHAE) HSP 1 Score: 229 bits (585), Expect = 1.100e-66 Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = 3 Query: 1080 GIGLTKQNKFMDDDKSSYKALFTNFGVHKNEVNPNITMPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPRTFKKSVIRGAERAA 1421
GIGLT+Q KFMDDDKSSYKALFTNFGVHKN VNPNIT PYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAA QQDPHLKPR+FKKSV+RGAERAA
Sbjct: 267 GIGLTQQKKFMDDDKSSYKALFTNFGVHKNVVNPNITTPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAAAQQDPHLKPRSFKKSVVRGAERAA 380
BLAST of mRNA_E-siliculosus-1a_F_contig1101.700.1 vs. uniprot
Match: D8LNQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ3_ECTSI) HSP 1 Score: 228 bits (582), Expect = 1.530e-66 Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 3 Query: 1080 GIGLTKQNKFMDDDKSSYKALFTNFGVHKNEVNPNITMPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPRTFKKSVIRGAERAA 1421
GIGLT QNKFM+DD SSYKALFTNFGVHKN VNPN+TMPYAHLSLEMKQQ DSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFV ATQQDPHLKPRTFKKSVIRGAERAA
Sbjct: 244 GIGLTNQNKFMEDDISSYKALFTNFGVHKNTVNPNVTMPYAHLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVTATQQDPHLKPRTFKKSVIRGAERAA 357
BLAST of mRNA_E-siliculosus-1a_F_contig1101.700.1 vs. uniprot
Match: D8LNS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS2_ECTSI) HSP 1 Score: 228 bits (582), Expect = 1.650e-66 Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 3 Query: 1080 GIGLTKQNKFMDDDKSSYKALFTNFGVHKNEVNPNITMPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPRTFKKSVIRGAERAA 1421
GIGLT QNKFM+DD SSYKALFTNFGVHKN VNPN+TMPYAHLSLEMKQQ DSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVA TQQDPHLKPRTFKKSVIRGAERAA
Sbjct: 244 GIGLTNQNKFMEDDISSYKALFTNFGVHKNTVNPNVTMPYAHLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVATTQQDPHLKPRTFKKSVIRGAERAA 357
BLAST of mRNA_E-siliculosus-1a_F_contig1101.700.1 vs. uniprot
Match: D8LNQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ1_ECTSI) HSP 1 Score: 222 bits (565), Expect = 7.100e-65 Identity = 103/114 (90.35%), Postives = 108/114 (94.74%), Query Frame = 3 Query: 1080 GIGLTKQNKFMDDDKSSYKALFTNFGVHKNEVNPNITMPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPRTFKKSVIRGAERAA 1421
G+GLT QNK M+DD+SSYKALFTNFG HKN VNPNITMPYA+LSLEMKQQ DSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVA TQQDPHLKPRTFKKSV+RGAERAA
Sbjct: 166 GVGLTNQNKLMEDDQSSYKALFTNFGHHKNVVNPNITMPYAYLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVATTQQDPHLKPRTFKKSVVRGAERAA 279
BLAST of mRNA_E-siliculosus-1a_F_contig1101.700.1 vs. uniprot
Match: A0A6H5JV19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV19_9PHAE) HSP 1 Score: 216 bits (550), Expect = 7.360e-62 Identity = 100/114 (87.72%), Postives = 105/114 (92.11%), Query Frame = 3 Query: 1080 GIGLTKQNKFMDDDKSSYKALFTNFGVHKNEVNPNITMPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPRTFKKSVIRGAERAA 1421
G+GLT Q KFM DD SSYKALFTNFGVHKN VNPNITMPYAH+SLEMKQQ DSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPR+F KS +RGA+R A
Sbjct: 238 GVGLTNQIKFMSDDISSYKALFTNFGVHKNAVNPNITMPYAHVSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPRSFTKSAVRGAQRVA 351
BLAST of mRNA_E-siliculosus-1a_F_contig1101.700.1 vs. uniprot
Match: D7FXH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI) HSP 1 Score: 163 bits (413), Expect = 5.530e-42 Identity = 76/114 (66.67%), Postives = 94/114 (82.46%), Query Frame = 3 Query: 1080 GIGLTKQNKFMDDDKSSYKALFTNFGVHKNEVNPNITMPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPRTFKKSVIRGAERAA 1421
GIGLT Q K+ DD SSYKA+ N GV+K++ + +IT PYA LS+E+KQQFDSWEIITE++P+EFAE+ GNIGGFWDL+LILWPL FVAA+Q +P+LKPR F KSV R ERA+
Sbjct: 226 GIGLTNQIKYAADDVSSYKAVSINSGVYKDQADADITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFAKSVTRTVERAS 339
BLAST of mRNA_E-siliculosus-1a_F_contig1101.700.1 vs. uniprot
Match: A0A6H5JF84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF84_9PHAE) HSP 1 Score: 155 bits (393), Expect = 4.990e-41 Identity = 73/112 (65.18%), Postives = 90/112 (80.36%), Query Frame = 3 Query: 1080 GIGLTKQNKFMDDDKSSYKALFTNFGVHKNEVNPNITMPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPRTFKKSVIRGAER 1415
GIGLT Q K+ D SSYKA+ N GV+K++ + +IT PYA LS+E+KQQFDSWEIITE++P+EFAE+ GNIGGFWDL+LILWPL FVAA+Q +P+LKPR F KS R ER
Sbjct: 48 GIGLTNQIKYTGDIISSYKAVSINSGVYKDQADGDITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFAKSFTRTVER 159
BLAST of mRNA_E-siliculosus-1a_F_contig1101.700.1 vs. uniprot
Match: D8LNQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ0_ECTSI) HSP 1 Score: 155 bits (391), Expect = 4.480e-40 Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1 Query: 811 EQMYWYPGGKFGNSTTCVADGVQWTDHREWVYGFLSDPEDPSAISTGVHLSYSCITNTSNTHTFNTVGIGLTKQNKFMDD 1050
E MYWYPGGKFGNSTTCVA+GV+W DHREWVYGFLSDPEDP+AISTG LSYSCITNTSNTH FNT+GIGLT QNKFM D
Sbjct: 131 ENMYWYPGGKFGNSTTCVAEGVEWADHREWVYGFLSDPEDPTAISTGFPLSYSCITNTSNTHIFNTLGIGLTNQNKFMSD 210
BLAST of mRNA_E-siliculosus-1a_F_contig1101.700.1 vs. uniprot
Match: D7FU22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU22_ECTSI) HSP 1 Score: 140 bits (353), Expect = 1.200e-34 Identity = 67/115 (58.26%), Postives = 88/115 (76.52%), Query Frame = 3 Query: 1080 GIGLTKQNKFMDDDKSSYKALFTNFGVHKNEVNPNIT---MPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPRTFKKSVIRGAER 1415
GIGLTK++K +DD +SYKAL + ++K++ NIT PYA LS+E+ Q DS E ITE NP E AE+FGN+GGFWDLLL+LWP+ F++A++QDPHLK R FKKSV RG++R
Sbjct: 14 GIGLTKEDKLYEDDTASYKALEISSALYKDKRTDNITGIASPYAWLSMEIAQSTDSLEEITEINPLEIAELFGNVGGFWDLLLLLWPIFFISASRQDPHLKGRNFKKSVTRGSDR 128
BLAST of mRNA_E-siliculosus-1a_F_contig1101.700.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.110e-33 Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 3 Query: 1080 GIGLTKQNKFMDDDKSSYKALFTNFGVHKNEVNPNIT---MPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPRTFKKSVIRGAE 1412
GIGLTK++K +DD +SYKAL T+ ++K++ NIT PYA LS+E+ Q DS E ITE NP E AE+FGN+GGFWDLLL+LWP+ F++A++QDPHLK R FKKSV RG+E
Sbjct: 207 GIGLTKEDKLYEDDTASYKALETSSAIYKDKRTDNITGIASPYAWLSMEIAQTTDSLEEITEINPLEIAELFGNVGGFWDLLLMLWPIFFISASRQDPHLKVRNFKKSVTRGSE 320 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1101.700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 22 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1101.700.1 >prot_E-siliculosus-1a_F_contig1101.700.1 ID=prot_E-siliculosus-1a_F_contig1101.700.1|Name=mRNA_E-siliculosus-1a_F_contig1101.700.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=120bp MYWYPGGKFGNSTTCVADGVQWTDHREWVYGFLSDPEDPSAISTGVHLSYback to top mRNA from alignment at E-siliculosus-1a_F_contig1101:26316..30129- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1101.700.1 ID=mRNA_E-siliculosus-1a_F_contig1101.700.1|Name=mRNA_E-siliculosus-1a_F_contig1101.700.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3814bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1101:26316..30129- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1101:26316..30129- >mRNA_E-siliculosus-1a_F_contig1101.700.1 ID=mRNA_E-siliculosus-1a_F_contig1101.700.1|Name=mRNA_E-siliculosus-1a_F_contig1101.700.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1101:26316..30129- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |