mRNA_E-siliculosus-1a_F_contig110.694.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI) HSP 1 Score: 697 bits (1799), Expect = 1.660e-252 Identity = 340/362 (93.92%), Postives = 351/362 (96.96%), Query Frame = 1 Query: 1 GGARTPLHSNGPTNGSLEYVMGWDWTPSARMRWYWVLACLVALLRTSVGAGGPADHRDEDKVTIQTTEWANATGTGTLPAISRHASCADIVAWLPPQSRPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIFGSLGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSITSGESLTVSLLPHNKYTRSCRRTPISIETVVAHCISTDKGAGMATWMKKAHLWNVPDDNGSN 1086 GGARTPLHSNGPTNGSLEY MGWDWTP ARMRWYWVLACLVAL+RTSVGAGGPAD+RDEDKVTIQT EWANATGTGTL AISRHASCADIVAWLPPQ +PAVVFQVVS+AYVSVQKNFISNMELHSTFSRENMYLICLDEESVE FG+LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWL DPMDDF+SDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIY+FMEVVGEFTEELENDQQAVNLALQ+LDVVWDPTSDM FSDSTRSGVGVV+SI SGESLTVSLLPHNKYTRSCRRTPIS+ETVVAHCISTDKG GMATWMK+AHLWNVPDDN SN Sbjct: 42 GGARTPLHSNGPTNGSLEYAMGWDWTPCARMRWYWVLACLVALVRTSVGAGGPADNRDEDKVTIQTMEWANATGTGTLLAISRHASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESFGALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSDSTRSGVGVVNSIYSGESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTDKGEGMATWMKEAHLWNVPDDNDSN 403
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI) HSP 1 Score: 456 bits (1173), Expect = 5.990e-157 Identity = 229/353 (64.87%), Postives = 272/353 (77.05%), Query Frame = 1 Query: 37 TNGSLEYVMGWDWTPSARMRWYWVLA-CLVALLRTS-VGAGGPADHRDE-DKVTIQTTEWANATGTGTLPAISRHASCADIVAWLPPQSRPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIFGSLGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSIT-SGESLTVSLLPHNKYTRSCRRTPISIETVVAHCISTDKGAGMATWMKKAHLWNVPDDNGS 1083 T+GS MG WT S R+ W+L CLV L+TS + A GP DE D V + T AN T GTLP I++ +SC+D++AWLPP+S PAVVFQVVSE Y S+++NFISNMELHSTFSREN+YL+CLDEESV IF LGIRCVR+GC+GCPVSR +W LRI+V++CLL AG DVLMSDADA+WLRDP DD SD + DS++VASR MP PL+ WGATICMGF FRAG +A+ FM VV E EL NDQ AVN AL +LDVVWDP SDM F+D+TR G GV+ +IT G SL V+LLPHNKYTRSCRRTPIS +T+VAHC+S+DKG GMATWMK+AHLWN+PDDN S Sbjct: 68 TSGSPGCPMGTGWTTSVRVLRGWLLTWCLVVCLKTSSIHAAGPDAEPDEADNVVVHTMGLANDTVAGTLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGGSAMQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVIENITVDGGSLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDDNDS 420
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE) HSP 1 Score: 446 bits (1148), Expect = 2.740e-154 Identity = 223/345 (64.64%), Postives = 268/345 (77.68%), Query Frame = 1 Query: 61 MGWDWTPSARMRWYWVLA-CLVALLRTS-VGAGGPADHRDE-DKVTIQTTEWANATGTGTLPAISRHASCADIVAWLPPQSRPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIFGSLGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSITS-GESLTVSLLPHNKYTRSCRRTPISIETVVAHCISTDKGAGMATWMKKAHLWNVPDDNGS 1083 MG WT S R+ W+LA CL L+TS A GP DE D V + T AN T GTLP I++ +SC+D++AWLPP+S PAVVFQVVSE Y S++ NFISNMELHSTFSREN+YL+CLDEESV IF LGIRCVR+GC+GCP+SR VW LR+E ++CLL AG DVLMSDADA+WLRDP +DF SD DS++VASR MP PL+ WGAT+CMGF FRAG +A+ FM VVGE EL +DQ+AVN AL +L VVWDPTSDM F++STR G GV+ +IT+ G+ L V+LLPHNKYTRSCRRTPIS +T+VAHC+S+DKG GMATWMK+AHLWN+PDDN S Sbjct: 1 MGTGWTTSVRVLRGWILAWCLAVCLKTSSTRAAGPNAEPDEADIVVVHTMGLANDTVAGTLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSAMQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVIENITANGDPLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDDNDS 345
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE) HSP 1 Score: 252 bits (643), Expect = 3.050e-78 Identity = 132/280 (47.14%), Postives = 181/280 (64.64%), Query Frame = 1 Query: 232 LPAISRHASCADIVAWLPPQSRPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIF-GSLGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRA-GSNAIYKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSIT--SGESLTVSLLPHNKYTRSCRRTPISIETVVAHCISTDKGAGMATWMKKAHLW 1059 LPAI+ A+CAD + W+PP+S PA+V QVVS Y+ +++NFI MEL+S +R+++YL+C+D SV F S+ IRC+ P S +W LR V CL++AG DV+MSDADA+WL DP DFN DSS+VASRG P PL WGAT+CMGFVLFRA G + +F+EV+ + ++DQ +VNLA + L +VWD SDM + +S G G + ++ + + +V+LLPHN YTR C TPIS +TVVAHC + WM ++ LW Sbjct: 35 LPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFP-SHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLW 313
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI) HSP 1 Score: 248 bits (632), Expect = 2.780e-76 Identity = 139/318 (43.71%), Postives = 198/318 (62.26%), Query Frame = 1 Query: 229 TLPAISRHASCADIVAWLPPQSRPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIFGS-LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAG-IDVLMSDADAVWLRDPMDD-FNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNA-IYKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSITSGESLT------------------------------VSLLPHNKYTRSC-RRTPISIETVVAHCISTDKGAGMAT-WMKKAHLWNVPDD 1074 TLPAI++ A+C D AW+PP+SRPAVV QVVSE Y+ +++NFI ME +S F+R N+YL+C+D+ S F + +GIRCV + P + H+W LR+ V CLL+ G +DV+MSDADA+WL DP D F+ D IVASRG+ P ++ WG+T+CMGF+LFRA + A + +F++V+ + + ++DQ +VN A ++L +VWD SDM + +ST G G++ + + + T V+LLPH+ YTR C RRT + TVVAHC K AG+ T WMKKA+LW+V DD Sbjct: 26 TLPAITKDATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLP-THEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 342
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI) HSP 1 Score: 161 bits (407), Expect = 6.920e-44 Identity = 88/184 (47.83%), Postives = 123/184 (66.85%), Query Frame = 1 Query: 538 LKAGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSN--AIYKFMEVVGEFTEELENDQQAVNLALQELDVVWDPT-SDMGFSDSTRSGVGVVHSITSGES--LTVSLLPHNKYTRSCRRTPISIETVVAHCISTDKGAGMATWMKKAHLWNVPDD 1074 ++AG DV+MSDADA+WL DPM DF+ SSIVASRG+ P + WGATICMGF+LFR ++ A+ +F+ V+ E ++DQ AVN+A ++L +VW+ SDM +++ST GVG + S++ ++ TV+LLPH+ YTR C TP+S TVVAHCIS+ A WM + LW V +D Sbjct: 64 VEAGHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQPFTVTLLPHSAYTRICASTPVSNTTVVAHCISSKTPQSKADWMHRMDLWAVDED 247
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI) HSP 1 Score: 137 bits (346), Expect = 5.110e-36 Identity = 75/150 (50.00%), Postives = 102/150 (68.00%), Query Frame = 1 Query: 364 MELHSTFSRENMYLICLDEESVEIFGS-LGIRCVRFGCMGCPVSRHH-VWALRIEVSVCLLKAGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSN--AIYKFMEVVGEFTEELENDQQAV 801 MEL ++F+R ++YL+CLD++S+ F S +GI C+ G +S H +W LR+ V CL +AG DV+MSDADA+WL DPM DF+ DSSIVASRG P + + WGAT+CMGF+LFRA +N A+ KF+ V+ E E+DQ AV Sbjct: 1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLS--GLNISSHEQIWVLRVRVVSCLAEAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE) HSP 1 Score: 135 bits (339), Expect = 6.510e-33 Identity = 86/259 (33.20%), Postives = 133/259 (51.35%), Query Frame = 1 Query: 316 VVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIFGS-LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAG-IDVLMSDADAVWLRDPMDD-FNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNA-IYKFMEVVGEFTEELENDQQ-----------------------------------------------------AVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSITSGESLT 921 VVSE Y+ +++NFI ME +S F+R N+YL+C+D S F + +GIRCV + P + +W LR++V CLL+ G +DV+MSDADA+WL DP D F+ I+ASRG+ P + WG+T+CMGF++FRA + A + +F++V+ + + ++DQ +VN A ++L +VWD SDM + +ST G GV+ + S + T Sbjct: 5 VVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDLP-THQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVWDKNSDMRYEESTGYGRGVIAGLGSSNNST 262
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: A0A7S0SXH7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXH7_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 8.220e-15 Identity = 57/198 (28.79%), Postives = 99/198 (50.00%), Query Frame = 1 Query: 403 LICLDEESVEIFGSLGIRCVRFGCMGCPVS------RHHVWALRIEVSVCLLK-AGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYKFMEVVGEFTEELEN-----DQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSITSGESLTVSLLPHNKYTRSC 960 +IC+D+ S +G+ CV S +H++W RIE+ L+ DV+++D D++W+ P++D + SSIV+SR P L+ WGAT+CMGF+ F+A + Y ++ ++ + N DQ N L + + W M ++ + +G + + S +++LLPH KY R+C Sbjct: 1 IICIDDSSFNQLLDIGLYCVLSNNFVSDKSFNKNDYKHNIWLRRIEILSHLINNENQDVILTDLDSLWINSPLNDISIHS-ASSSIVSSRAWWPHELWSVWGATLCMGFIYFKADEFSKYFVNKIYLTMSDNINNYRKVDDQITANEELYKNQIEWFDKP-MSVGNNAIANIGSISY--NNMSYSITLLPHYKYIRNC 194
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: A0A7S2LCA9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LCA9_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 6.510e-10 Identity = 57/190 (30.00%), Postives = 91/190 (47.89%), Query Frame = 1 Query: 496 HHVWALRIEVSVCLLKA--GIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMP--VPL---------FRTWGATICMGFVLFRAGSNAIYKFMEVVGEFTEELENDQQ-----AVNLALQELDVVW--DPTSDMGFSDSTRSGVGVVHSITSGESLTVSLLPHNKYTRSCRRTPISIE-TVVAHC 1002 + +W LR+ + ++ ++VL +DADA+WL+DP+ +N ++ S+IVASRG P PL TIC GF FR S +++ + + ND Q +NL D + DP+S F+ +S + ++ VS+LP+ + TR C R +E +VVAHC Sbjct: 126 NKLWVLRLHIMQRIINTFPNLNVLYTDADAIWLKDPVQLYNHPQHQSSNIVASRGTYPEWCPLAMELHDDEKMHLNTVTICFGFTYFR-NSPDLHQLAQNLQNAVARYRNDDQIAINCVLNLQYDSNDDLHMNDPSSIAAFTQPDKSVIRSFFGKVIAHNIKVSILPYEQVTRRCGRDEGMLENSVVAHC 314 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig110.694.1 >prot_E-siliculosus-1a_F_contig110.694.1 ID=prot_E-siliculosus-1a_F_contig110.694.1|Name=mRNA_E-siliculosus-1a_F_contig110.694.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=363bp GGARTPLHSNGPTNGSLEYVMGWDWTPSARMRWYWVLACLVALLRTSVGAback to top mRNA from alignment at E-siliculosus-1a_F_contig110:84011..85099- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig110.694.1 ID=mRNA_E-siliculosus-1a_F_contig110.694.1|Name=mRNA_E-siliculosus-1a_F_contig110.694.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1089bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:84011..85099- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig110:84011..85099- >mRNA_E-siliculosus-1a_F_contig110.694.1 ID=mRNA_E-siliculosus-1a_F_contig110.694.1|Name=mRNA_E-siliculosus-1a_F_contig110.694.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2178bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:84011..85099- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |