mRNA_E-siliculosus-1a_F_contig110.693.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig110.693.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE) HSP 1 Score: 644 bits (1660), Expect = 2.120e-225 Identity = 316/320 (98.75%), Postives = 317/320 (99.06%), Query Frame = 3 Query: 138 MAGFFISCVVLATAVFCGRSAAEEVAPGPAVSRRLPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRGVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLWFSDNETR 1097 MA FFISC+VLATAVFCGRSAAEEVA GPAVSRRLPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGR VVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLWFSDNETR Sbjct: 1 MASFFISCLVLATAVFCGRSAAEEVAHGPAVSRRLPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLWFSDNETR 320
BLAST of mRNA_E-siliculosus-1a_F_contig110.693.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI) HSP 1 Score: 314 bits (804), Expect = 1.370e-96 Identity = 169/311 (54.34%), Postives = 203/311 (65.27%), Query Frame = 3 Query: 240 LPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQ-DVIMSDADALWLDDPFKD-FNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRGVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQ----------------------------PFSVTLLPHNAYTRVCDETPISNKT-VVAHCWAP-KTADSKTGWMVQSKLW 1076 LPAIT ATC DW WIPPRS PA+VMQVVS Y+++ERNFIRLME NS TR ++YLMCMD+ S +FF++ M IRC+P++A D P+H IW LR RVVSCL+E G DVIMSDADALWL DP KD F+ +VASRG +P EWG+T+CMGF+LFRA + FL+VM LV +NKDDQISVN AA+ LGIVWD+ SDMRY ES +G G I L NN PF VTLLPH+AYTR+C +SN+T VVAHC+ P K A KT WM ++ LW Sbjct: 27 LPAITKDATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLW 337
BLAST of mRNA_E-siliculosus-1a_F_contig110.693.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE) HSP 1 Score: 262 bits (670), Expect = 6.080e-77 Identity = 136/284 (47.89%), Postives = 178/284 (62.68%), Query Frame = 3 Query: 228 VSRRLPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFP-SHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRGVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLW 1076 V+ LP IT ++C+D + W+PPRS PA+V QVVS Y LE NFI MEL+S +R++LYL+C+D SV F+ + IRC+ P S ++WVLR CL+ AGQDV+MSDADA+WL DP DF +DS+VVASR P PL +WGAT+CMGF FRA G + F+ V+ +V++ DDQ +VN A + LG+VWD SDM + S G G I+ + N P VTLLPHN YTR C TPISN T+VAHC + + WM ++ LW Sbjct: 57 VAGTLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSAMQA-FMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVIENIT-ANGDPLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLW 337
BLAST of mRNA_E-siliculosus-1a_F_contig110.693.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI) HSP 1 Score: 254 bits (650), Expect = 4.270e-73 Identity = 132/284 (46.48%), Postives = 177/284 (62.32%), Query Frame = 3 Query: 228 VSRRLPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFP-SHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRGVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLW 1076 V+ LP IT ++C+D + W+PPRS PA+V QVVS Y LE NFI MEL+S +R++LYL+C+D SV F+ + IRC+ P S +IWVLR V CL+ AGQDV+MSDADA+WL DP D +DS+VVASR P PL +WGAT+CMGF FRA G + F+ V++ + ++ +DQI+VN A L +VWD SDM + ++ G G I+ + + VTLLPHN YTR C TPISN T+VAHC + + WM ++ LW Sbjct: 132 VAGTLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGGSAMQA-FMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVIENITVDGGS-LKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLW 412
BLAST of mRNA_E-siliculosus-1a_F_contig110.693.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI) HSP 1 Score: 251 bits (640), Expect = 6.620e-72 Identity = 128/280 (45.71%), Postives = 182/280 (65.00%), Query Frame = 3 Query: 240 LPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFP-SHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRGVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLW 1076 L AI+ A+CAD + W+PP+ PA+V QVVS+ Y+ +++NFI MEL+S +R+++YL+C+D SV F ++ IRC+ P S +W LR V CL++AG DV+MSDADA+WL DP DF+ DSS+VASRG P PL WGAT+CMGFVLFRA G + +F+EV+ + ++DQ +VNLA + L +VWD SDM + +S G G ++++ + + +V+LLPHN YTR C TPIS +TVVAHC + + WM ++ LW Sbjct: 119 LLAISRHASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESF-GALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRA-GSNAIYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSDSTRSGVGVVNSIY--SGESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTDKGEGMATWMKEAHLW 394
BLAST of mRNA_E-siliculosus-1a_F_contig110.693.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI) HSP 1 Score: 240 bits (612), Expect = 6.390e-70 Identity = 122/199 (61.31%), Postives = 148/199 (74.37%), Query Frame = 3 Query: 513 WV--LRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATG-RGVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQE-SDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLWFSDNETR 1097 WV + V VEAG DV+MSDADALWL DP KDF+LP V+ SS+VASRG FP +G WGAT+CMGF+LFR T R + EF+ VM+ALV + KDDQI+VN+AA +LGIVW+QE SDMRY ES FG G ID+L D++NQPF+VTLLPH+AYTR+C TP+SN TVVAHC + KT SK WM + LW D +TR Sbjct: 51 WVPPMSGPTVVMQVEAGHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQPFTVTLLPHSAYTRICASTPVSNTTVVAHCISSKTPQSKADWMHRMDLWAVDEDTR 249
BLAST of mRNA_E-siliculosus-1a_F_contig110.693.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI) HSP 1 Score: 206 bits (524), Expect = 1.260e-58 Identity = 100/148 (67.57%), Postives = 121/148 (81.76%), Query Frame = 3 Query: 372 MELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATG-RGVVGEFLEVMDALVHKNKDDQISV 812 MEL ++ TR+HLYLMC+D+ S+HFFES M I CIPL+ + SH +IWVLR RVVSCL EAG DVIMSDADALWL DP KDF+LP VIDSS+VASRGK PK +G WGATMCMGF+LFRAT R +G+F+ VM+ALV +++DDQI+V Sbjct: 1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLSGLNISSHEQIWVLRVRVVSCLAEAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148
BLAST of mRNA_E-siliculosus-1a_F_contig110.693.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE) HSP 1 Score: 202 bits (515), Expect = 7.420e-55 Identity = 115/260 (44.23%), Postives = 146/260 (56.15%), Query Frame = 3 Query: 312 IVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQ-DVIMSDADALWLDDPFKD-FNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRGVVGEFLEVMDALVHKNKDDQ-----------------------------------------------------ISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENN 926 + + VVS Y+++ERNFIRLME NS TR ++YLMCMD S +FF++ M IRC+P++A D P+H +IW LR +VVSCL+E G DVIMSDADALWL DP KD F+ ++ASRG +P EWG+T+CMGF++FRA + FL+VM LV +NKDDQ ISVN AA+ LGIVWD+ SDMRY ES +G G I L NN Sbjct: 1 MTVPVVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDLPTHQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVWDKNSDMRYEESTGYGRGVIAGLGSSNN 260
BLAST of mRNA_E-siliculosus-1a_F_contig110.693.1 vs. uniprot
Match: A0A8J6CCA2_DIALT (Nucleotid_trans domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCA2_DIALT) HSP 1 Score: 109 bits (273), Expect = 2.310e-22 Identity = 79/271 (29.15%), Postives = 130/271 (47.97%), Query Frame = 3 Query: 312 IVMQVVSRHYLELERNFIRLMELNSALTRDHL-----YLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRGVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTL-VDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAP-KTADSKTGWMVQSKLWFSDNETR*D 1103 +V+ V++ Y + NFIR A HL +++C D + + + RC T S A+++ R V+ LV G+DV+++D DA+WL DP D + ++ SRG+ P L+WGA++CMGF+ FR + V M L ++DQ N + +VWD E +R+V+S FGT+ + + V +LPH +Y R+C++ + ++AHC + K A K + LW+ + R D Sbjct: 50 VVVMVLNSAYTRVFENFIR------APGAHHLAAWETHIICTDRATAVSL-AKLGWRCQD-TVKTGRSAAQVYTRRIPYVAHLVHLGRDVLITDVDAIWLGDPLPDI---MATQAGIIGSRGRSPH---LDWGASLCMGFIFFRGSDPLVRA----AMPVLTEPMREDQTDFNHNMQRERLVWD-EGRVRFVDSIDTSFGTLRPKNANAGHAGLRVAMLPHKSYVRICEDKVDYSTVIIAHCHSRGKRAHLKVQSLGAKNLWYIPEKGRPD 301
BLAST of mRNA_E-siliculosus-1a_F_contig110.693.1 vs. uniprot
Match: A0A7S4TAX3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4TAX3_9DINO) HSP 1 Score: 87.4 bits (215), Expect = 7.240e-15 Identity = 77/273 (28.21%), Postives = 123/273 (45.05%), Query Frame = 3 Query: 261 ATCADWMKWIPPRSDPAIVM-QVVSRHYLELERNFIRL---MELNSALTRDHLYLMCMDNVSVHFFESSMN-IRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDF-NLPR-VIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRGVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKT-GW 1055 A C D + W R+ +V+ VVS YL++ R ++R + ++ H+ ++C+D + E + + + + +R RV + L E G DV+ +D DA+WL DP F +L R +V+SRG +P+ L WGAT+C G + + GR G F + + DDQ +N G+ W + Y S + L E V LLPH+++ R+C + + + VV HC K A K GW Sbjct: 70 AECID-VSWFARRAVRGLVVFSVVSVDYLDVARAWLRRIGRLNISDLRVSKHVSMVCVDPAARAALERIGHPCHLLQPAGPSASAFGAVAFVRHRVAARLNERGLDVLYTDLDAIWLQDPLPTFRSLARQAAGPLLVSSRGSYPERLSELWGATLCTGVLFWH--GR-FPGRFWAELAEAAGRATDDQAPLNELLAAQGLRWGPSPRLAYANSSRLDRARVPGLGLE------VALLPHSSFPRLCRDL-VEEEVVVLHCLRDKRAGRKALGW 331 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig110.693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 19 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig110.693.1 >prot_E-siliculosus-1a_F_contig110.693.1 ID=prot_E-siliculosus-1a_F_contig110.693.1|Name=mRNA_E-siliculosus-1a_F_contig110.693.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=321bp MAGFFISCVVLATAVFCGRSAAEEVAPGPAVSRRLPAITPKATCADWMKWback to top mRNA from alignment at E-siliculosus-1a_F_contig110:77476..81557- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig110.693.1 ID=mRNA_E-siliculosus-1a_F_contig110.693.1|Name=mRNA_E-siliculosus-1a_F_contig110.693.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4082bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:77476..81557- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig110:77476..81557- >mRNA_E-siliculosus-1a_F_contig110.693.1 ID=mRNA_E-siliculosus-1a_F_contig110.693.1|Name=mRNA_E-siliculosus-1a_F_contig110.693.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1926bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:77476..81557- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |