mRNA_E-siliculosus-1a_F_contig110.692.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig110.692.1 vs. uniprot
Match: A0A6H5L244_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L244_9PHAE) HSP 1 Score: 791 bits (2042), Expect = 4.860e-281 Identity = 379/386 (98.19%), Postives = 383/386 (99.22%), Query Frame = 2 Query: 164 MRWCCFPGLLVLAASQAFDAGEQESTASTFLELARERFEARNGRPATFEENAFAFDGLQLIRVPKAGSSEASVIARRLGGCVPRGPCCRFPGDPPGSCPLEGLMCPMVTGCTSHRMDPTTTAMLEDPSVFSMTNIRGVVDRMVSGFFYTDPHSPPCAWKDDVDYEACFQKMITTRKFQNIAARMVSGHDAYKGGIRLCMDKDQDEGGEGVCVEDLESVIRGACNLNFVTMCETWDSSVLLLFETLPWLGPTADFFPAPKRQHRQLPSIGDADAPAPPEVPAASGRSRQNTGAKHEEGIKHITPELREAASSANAVDEALHEFVSAKFCERLREAGLLHHPLVAAQLATYEPLDHRCNDETWAKETLERFAPITPQECRLYEPFEKP 1321
MRWCCFPGLLV+AASQAFDAGEQESTASTFLELARERFEARNGRPATFEENAFAFDGLQLIRVPKAGSSEASVIARRLGGCVPRGPCCRFPGDPPGSCPLEGLMCPMVTGCTSHRMDPTTTAMLEDPSVFSM NIRGVVDRMVSGFFYTDPHSPPCAWKDDVDYEACFQKMITTRKFQNIAARMVSGHDAYKGGIRLCMDKDQDEGGEGVCVEDLESVIRGACNLNFVTMCETWDSSVLLLFETLPWLGPTADFFPAPKRQHRQLPSIGDADAPAP EVPAASGRSRQNTGAKHEEGIKHITPELREAASSANAVDEALHEF+SAKFCERLRE GLLHHPLV+AQLATYEPLDHRCNDETWAKETLERFAPITPQECRLYEPF+KP
Sbjct: 1 MRWCCFPGLLVIAASQAFDAGEQESTASTFLELARERFEARNGRPATFEENAFAFDGLQLIRVPKAGSSEASVIARRLGGCVPRGPCCRFPGDPPGSCPLEGLMCPMVTGCTSHRMDPTTTAMLEDPSVFSMANIRGVVDRMVSGFFYTDPHSPPCAWKDDVDYEACFQKMITTRKFQNIAARMVSGHDAYKGGIRLCMDKDQDEGGEGVCVEDLESVIRGACNLNFVTMCETWDSSVLLLFETLPWLGPTADFFPAPKRQHRQLPSIGDADAPAPLEVPAASGRSRQNTGAKHEEGIKHITPELREAASSANAVDEALHEFISAKFCERLRETGLLHHPLVSAQLATYEPLDHRCNDETWAKETLERFAPITPQECRLYEPFDKP 386
BLAST of mRNA_E-siliculosus-1a_F_contig110.692.1 vs. uniprot
Match: D7FWY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY0_ECTSI) HSP 1 Score: 612 bits (1578), Expect = 1.360e-210 Identity = 297/393 (75.57%), Postives = 326/393 (82.95%), Query Frame = 2 Query: 140 SAGYTANGMRWCCFPGLLVLAASQAFDAGEQESTASTFLELARERFEARNGRPATFEENAFAFDGLQLIRVPKAGSSEASVIARRLGGCVPRGPCCRFPGDPPGSCPLEGLMCPMVTGCTSHRMDPTTTAMLEDPSVFSMTNIRGVVDRMVSGFFYTDPHSPPCAWKDDVDYEACFQKMITTRKFQNIAARMVSGHDAYKGGIRLCMDKDQDEGGEGVCVEDLESVIRGACNLNFVTMCETWDSSVLLLFETLPWLGPTADFFPAPKRQHRQLPSIGDADAPAPPEVPAASGRSRQNTGAKHEEGIKHITPELREAASSANAVDEALHEFVSAKFCERLREAGLLHHPLVAAQLATYEPLDHRCNDETWAKETLERFAPITPQECRLYEPFEK 1318
SAGY A GM+W FPGLL LAAS F+ G Q+ ASTFLELARERFEARN R AT E + FAFD LQL+RVPKAGSSEASVIARRLGGCVPRGPCC PG PPGSCP EGLMCP V GCT+H MDP MLEDPSVFSM+N+R VVDRMVSGF YT PHSP C DDVDYE+CF++M+ T KFQN+AARMVSGHDAY+G ++LCM+KDQD GGE C EDLESVI+GACNLNFVTMCE W SSVLLLFETL WL PTADFFPAP+ +HRQL S DA + AA+G R NTG+KHEEGIKHITPELR+AA SANAVDEALHEFVSAKFCERLRE GLLHHPLV A+LATYEPL+ RCNDETWAK+TLERFAPI P ECRLY+PF+K
Sbjct: 12 SAGYIAGGMQWRSFPGLLALAASHEFNVGGQDVAASTFLELARERFEARNVRSATLEGDTFAFDRLQLVRVPKAGSSEASVIARRLGGCVPRGPCCMMPGHPPGSCPSEGLMCPAVLGCTAHMMDPKRNTMLEDPSVFSMSNVRDVVDRMVSGFLYTQPHSPLCTRTDDVDYESCFEEMMNTTKFQNVAARMVSGHDAYEGSVKLCMNKDQDVGGEAACAEDLESVIKGACNLNFVTMCEAWASSVLLLFETLRWLEPTADFFPAPRHRHRQLSSSEDA------KEGAAAGPQRHNTGSKHEEGIKHITPELRDAARSANAVDEALHEFVSAKFCERLRETGLLHHPLVGAELATYEPLERRCNDETWAKDTLERFAPIMPDECRLYQPFDK 398
BLAST of mRNA_E-siliculosus-1a_F_contig110.692.1 vs. uniprot
Match: A0A6H5KAL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL5_9PHAE) HSP 1 Score: 553 bits (1425), Expect = 4.640e-187 Identity = 282/421 (66.98%), Postives = 308/421 (73.16%), Query Frame = 2 Query: 233 ESTASTFLELARERFEARNGRPATFEENAFAFDGLQ-----LIRVPKAGSSEASVIARRLGGCVPRGPCCRFPGDPPGSCPLEGLMCPMVTGCTSHRMDPTTTAMLEDPSVFSMTNIRGVVDRMVSGFFYTDPHSPPCAWKDDVDYEACFQKMITTRKFQNIAARMVSGHDAYKGGIRLCMDKDQDEGGEGVCVEDLESVIRGACNLNFVTMCETWDSSVLLLFETLPWLGPTADFFPAPKRQHRQL--------PSIGDADAPAPPEVPAASGRSRQNTGAKHEEGIKHITPELREAASSANAVDEALHEFVSAKFCERLREAGLLHHPLVAAQLATYEPLDHR----------------------------------------------CNDETWAKETLERFAPITPQECRLYEPFEK 1318
+STASTFLELARERFEARNGRPATFEE+ F+ D LQ L+ VPKAGSSEASV+ARRLGGCVPRGPCC PG PPGSCP EGLMCP V GCT+H+MDP MLEDPSVFSM+NIR VVDRMVSGF YT PHSP C DDVDYE+CF++M+ T KFQN+AARMVSGHDAY I+LCM+KDQD GGE C EDLESV++GACNLNFVTMCE W SSVLLLFETLPWL PTADFFPAP+ +H Q P DA + AASG RQNTGAKHEEG+KHITPELR+AA SANAVDEALHE VSAKFCERLREAGLLHHPLV A+LATYEPL+HR CNDETWAK+TLERFAPI P ECRLY+PFEK
Sbjct: 12 DSTASTFLELARERFEARNGRPATFEESNFSLDRLQGLLRMLMLVPKAGSSEASVVARRLGGCVPRGPCCMMPGHPPGSCPSEGLMCPAVLGCTAHKMDPKRNTMLEDPSVFSMSNIRDVVDRMVSGFLYTQPHSPLCTRTDDVDYESCFEEMMNTTKFQNVAARMVSGHDAYDSSIKLCMNKDQDVGGEAACAEDLESVMKGACNLNFVTMCEAWGSSVLLLFETLPWLEPTADFFPAPRHRHHQCGCDLGRVTPVYSSEDA----KESAASGPQRQNTGAKHEEGMKHITPELRDAARSANAVDEALHELVSAKFCERLREAGLLHHPLVVAELATYEPLEHRYAIGFVLCQAFGWGEADLRVWPCMIRCSRSETPSFFALPLSVSVPRCNDETWAKDTLERFAPIMPDECRLYQPFEK 428
BLAST of mRNA_E-siliculosus-1a_F_contig110.692.1 vs. uniprot
Match: D7G3X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X3_ECTSI) HSP 1 Score: 181 bits (460), Expect = 4.350e-50 Identity = 85/101 (84.16%), Postives = 88/101 (87.13%), Query Frame = 2 Query: 347 RVPKAGSSEASVIARRLGGCVPRGPCCRFPGDPPGSCPLEGLMCPMVTGCTSHRMDPTTTAMLEDPSVFSMTNIRGVVDRMVSGFFYTDPHSPPCAWKDDV 649
RVPKAGSSEASVIARRLGGCVPRGPCC FPGDPPGSCPLEGLMCPMVTGC H M+ T MLEDPSVFSMTNIRGVV+RMVSGF YT HSPPCA D+V
Sbjct: 4 RVPKAGSSEASVIARRLGGCVPRGPCCAFPGDPPGSCPLEGLMCPMVTGCVGHNMNQRRTMMLEDPSVFSMTNIRGVVNRMVSGFLYTKSHSPPCARTDNV 104
BLAST of mRNA_E-siliculosus-1a_F_contig110.692.1 vs. uniprot
Match: A0A482SEE5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEE5_9ARCH) HSP 1 Score: 102 bits (254), Expect = 1.910e-20 Identity = 61/176 (34.66%), Postives = 87/176 (49.43%), Query Frame = 2 Query: 401 GCVPRGPCCRFPGDPPGSCPLEGLM-CPM---VTGCTSHRMDPTTTAMLEDPSVFSMTNIRGVVDRMVSGFFYTDPH-SPPCAWKDDVDYEACFQKMITTRKFQNIAARMVSGHDAYKGGIRLCMDKDQDEGGEGVCVEDLESVIRGACNLNFVTMCETWDSSVLLLFETLPWLGP 913
GC P GPCCR+PGDPPGSCP +GL C + V GCT H + +L+DP++FS+T +R + R +S + Y H + C +D C + I + F+NIA ++ +G AY I C + C E I + + + E W S+LLL P L P
Sbjct: 3 GCYPPGPCCRWPGDPPGSCPAKGLFECELQKKVIGCTHHHPNYN---VLKDPNIFSLTFMRNPISRAISAYGYGSIHYNSKCG---QIDSPMCIKAYIHSNAFRNIAVKLFTGQYAYAD-IPTCRNT-------STCPNSFELAISNIHHFRVIGLAELWSVSLLLLHSVFPGLEP 164 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig110.692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig110.692.1 >prot_E-siliculosus-1a_F_contig110.692.1 ID=prot_E-siliculosus-1a_F_contig110.692.1|Name=mRNA_E-siliculosus-1a_F_contig110.692.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=387bp MRWCCFPGLLVLAASQAFDAGEQESTASTFLELARERFEARNGRPATFEEback to top mRNA from alignment at E-siliculosus-1a_F_contig110:64588..76575+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig110.692.1 ID=mRNA_E-siliculosus-1a_F_contig110.692.1|Name=mRNA_E-siliculosus-1a_F_contig110.692.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11988bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:64588..76575+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig110:64588..76575+ >mRNA_E-siliculosus-1a_F_contig110.692.1 ID=mRNA_E-siliculosus-1a_F_contig110.692.1|Name=mRNA_E-siliculosus-1a_F_contig110.692.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2322bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:64588..76575+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |