mRNA_E-siliculosus-1a_F_contig110.688.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig110.688.1 vs. uniprot
Match: D8LSW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW2_ECTSI) HSP 1 Score: 162 bits (410), Expect = 3.340e-50 Identity = 85/95 (89.47%), Postives = 86/95 (90.53%), Query Frame = 1 Query: 1 MASVRQAGETSQGQASGGGQGPTASSVEQQHRQHVEEGGNVAHQPGNRMAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 285 M SVRQA +TSQGQASGGGQ PTASS EQQ QHVEEGGNVAHQ GN MAEAMKRGGILGWGSYLTFAWAG FLKLGSTVTLKEEHLEGIYDKHE Sbjct: 1 MGSVRQADQTSQGQASGGGQRPTASSREQQQSQHVEEGGNVAHQSGNLMAEAMKRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYDKHE 95
BLAST of mRNA_E-siliculosus-1a_F_contig110.688.1 vs. uniprot
Match: A0A6H5JGA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA2_9PHAE) HSP 1 Score: 156 bits (395), Expect = 2.680e-46 Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 1 Query: 1 MASVRQAGETSQGQAS-GGGQGPTASSVEQQHRQHVEEGGNVAHQPGNRMAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 285 MASVRQA E SQGQ S GGGQGPTAS EQQ +HVEEGG+VAHQPGNRMAEAM+RGGILGWGSYLTFAWAG FLKLGST+TLKEEHLEGIY KHE Sbjct: 1 MASVRQADEASQGQTSIGGGQGPTASPGEQQQHEHVEEGGDVAHQPGNRMAEAMQRGGILGWGSYLTFAWAGPFLKLGSTITLKEEHLEGIYHKHE 96
BLAST of mRNA_E-siliculosus-1a_F_contig110.688.1 vs. uniprot
Match: A0A6H5JHZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ3_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.230e-41 Identity = 81/97 (83.51%), Postives = 84/97 (86.60%), Query Frame = 1 Query: 1 MASVRQAGETSQGQAS-GGGQGPTASSVEQQHRQHVEEGGNVAHQ-PGNRMAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 285 MASV QA +TSQGQAS GGQ TASS EQQ RQH E+G NVAHQ P NRMA AMKRGGI+GWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE Sbjct: 1 MASVCQADKTSQGQASVRGGQDATASSREQQQRQHAEDGENVAHQQPDNRMAAAMKRGGIMGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 97
BLAST of mRNA_E-siliculosus-1a_F_contig110.688.1 vs. uniprot
Match: A0A6H5K598_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K598_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 4.800e-23 Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 1 Query: 133 PGNRMAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 285 P MKRGGI+GWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE Sbjct: 12 PATAWRRPMKRGGIIGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 62
BLAST of mRNA_E-siliculosus-1a_F_contig110.688.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 4.430e-20 Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1 Query: 145 MAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 285 MAEA++RGGILGWGSYLTFAWAG FLKLGSTVTLKEEHLEGIY KHE Sbjct: 1 MAEALQRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYHKHE 47 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig110.688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig110.688.1 >prot_E-siliculosus-1a_F_contig110.688.1 ID=prot_E-siliculosus-1a_F_contig110.688.1|Name=mRNA_E-siliculosus-1a_F_contig110.688.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=95bp MASVRQAGETSQGQASGGGQGPTASSVEQQHRQHVEEGGNVAHQPGNRMAback to top mRNA from alignment at E-siliculosus-1a_F_contig110:945..1229- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig110.688.1 ID=mRNA_E-siliculosus-1a_F_contig110.688.1|Name=mRNA_E-siliculosus-1a_F_contig110.688.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=285bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:945..1229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig110:945..1229- >mRNA_E-siliculosus-1a_F_contig110.688.1 ID=mRNA_E-siliculosus-1a_F_contig110.688.1|Name=mRNA_E-siliculosus-1a_F_contig110.688.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=570bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:945..1229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |