mRNA_E-siliculosus-1a_F_contig1099.676.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1099.676.1 vs. uniprot
Match: D7FZ07_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ07_ECTSI) HSP 1 Score: 395 bits (1015), Expect = 2.690e-132 Identity = 246/257 (95.72%), Postives = 246/257 (95.72%), Query Frame = 3 Query: 177 MSEGEAYDPAAAAVPAGGXXXXXXXXXXXXXXXXXXXXXXXGIAELDASMGRGAPVPPAGGGGKPLPKKEQKDFRGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLATTDEAREGLGGGFNERQDRASVATVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSFGGGILGGTSLAPVGKPPVPGQFDDASPAPSVTTYDKFGRPRLAGGGRNXXXXXXXXXXXXXXXXXX-----GDRDGRGGDHRD 932
MSEGEAYDPAAAAVPAGG XXXXXXXXXXXXXXXXXXXX GIAELDASMGRGAPVPPAGGGGKPL KKEQKDFRGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLA TDEAREGLGGGFNERQDRASVATVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSFGGGILGGTSLAPVGKPPV GQFDDASPAPSVTTYDKFGRPRLAGGGRNXXXXXXXXXXXXXXXXXX GDRDGRGGDHRD
Sbjct: 1 MSEGEAYDPAAAAVPAGGRXXXXXXXXXXXXXXXXXXXXIAGIAELDASMGRGAPVPPAGGGGKPLLKKEQKDFRGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLAATDEAREGLGGGFNERQDRASVATVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSFGGGILGGTSLAPVGKPPVRGQFDDASPAPSVTTYDKFGRPRLAGGGRNXXXXXXXXXXXXXXXXXXXXXXXGDRDGRGGDHRD 257
BLAST of mRNA_E-siliculosus-1a_F_contig1099.676.1 vs. uniprot
Match: A0A7S2CIC2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIC2_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.380e-35 Identity = 69/103 (66.99%), Postives = 78/103 (75.73%), Query Frame = 3 Query: 393 DFRGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLATTDEAREGLGGGFNERQDRASVATVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSFG 701
D RGPAGLF DW C CGNVNW RR+TCN CN KP+LA D+AREGLGGGF ERQ++AS++TVEV EDG+DDFGRK DK AKE AALARL S+G
Sbjct: 25 DHRGPAGLFVAADWDCPGCGNVNWARRSTCNMCNTKKPDLADPDDAREGLGGGFLERQEQASLSTVEVAEDGYDDFGRKIKSKNKDKAAKEAAALARLTASYG 127
BLAST of mRNA_E-siliculosus-1a_F_contig1099.676.1 vs. uniprot
Match: A0A4D9D5Z5_9STRA (RanBP2-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Z5_9STRA) HSP 1 Score: 139 bits (350), Expect = 7.220e-35 Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 3 Query: 381 KEQKDF-RGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLATTDEAREGLGGGFNERQDRASVA-TVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSFG 701
+E+ DF +GP GLFK DW C +CGNVNWERR CN C KP LA + EAREGLGGGF ERQ+R +++ VEV EDGFDDFGRKK K + D+KAKE AALARL+ ++G
Sbjct: 92 REEMDFSKGPPGLFKASDWNCPSCGNVNWERREFCNMCGGKKPTLAGSGEAREGLGGGFLERQERGAISQAVEVGEDGFDDFGRKKAKEKVDRKAKEMAALARLKATYG 200
BLAST of mRNA_E-siliculosus-1a_F_contig1099.676.1 vs. uniprot
Match: A0A7S2WNS0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNS0_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.000e-32 Identity = 72/126 (57.14%), Postives = 80/126 (63.49%), Query Frame = 3 Query: 327 GRGAPVPPAGGGGKPLPKKEQKDFRGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLATTDEAREGLGGGFNERQDRASVATVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSFGG 704
G G P GG G DFRGP GLF K DW C CGNVNW RR+ CN C KP+ A DE R+GLGGGF ERQ+RAS VEV +DGFDDFGRK + ++K AKE AALARL SF G
Sbjct: 7 GAGPPGAGRGGRGXXXXXGRGADFRGPPGLFVKADWDCNGCGNVNWARRSHCNMCGQAKPSTAGPDEQRDGLGGGFLERQERASSTQVEVADDGFDDFGRKAKQRASNKSAKEAAALARLNASFTG 132
BLAST of mRNA_E-siliculosus-1a_F_contig1099.676.1 vs. uniprot
Match: F0WQ51_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WQ51_9STRA) HSP 1 Score: 138 bits (347), Expect = 3.120e-31 Identity = 64/102 (62.75%), Postives = 75/102 (73.53%), Query Frame = 3 Query: 393 DFRGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLATTDEAREGLGGGFNERQDRASVATVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSF 698
DFRGP GLFK GDWTCT CGNVNWERR CN C N KP + DE R+G+ GGFNERQ+R + A E+ EDG+DDFG KK K A K +E AALARL++S+
Sbjct: 64 DFRGPPGLFKPGDWTCTVCGNVNWERRQECNICKNAKPGMPGVDERRDGVAGGFNERQERVASAKAEIGEDGYDDFGMKKKKINASKTQREAAALARLQQSY 165
BLAST of mRNA_E-siliculosus-1a_F_contig1099.676.1 vs. uniprot
Match: A0A8K1CMJ3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMJ3_PYTOL) HSP 1 Score: 130 bits (327), Expect = 3.980e-31 Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 3 Query: 402 GPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLATTDEAREGLGGGFNERQDRASVATVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSF 698
GP GLFK GDW C CGNVNWERR CN C KP ++ DE R+G+GGGFNERQ+R + A EVDEDG+DDFG KK K +A K +E AALARL++S+
Sbjct: 64 GPPGLFKAGDWACLTCGNVNWERRNECNICKGSKPGMSGLDEKRDGIGGGFNERQERVASAKKEVDEDGYDDFGVKKKKVKASKAEREAAALARLKQSY 162
BLAST of mRNA_E-siliculosus-1a_F_contig1099.676.1 vs. uniprot
Match: A0A024GHB5_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GHB5_9STRA) HSP 1 Score: 136 bits (343), Expect = 1.620e-30 Identity = 63/102 (61.76%), Postives = 75/102 (73.53%), Query Frame = 3 Query: 393 DFRGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLATTDEAREGLGGGFNERQDRASVATVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSF 698
DFRGP GLFK GDWTCT CGNVNWERR CN C N KP + DE R+G+ GGFNERQ+R + A E+ EDG+DDFG +K K A K +E AALARL++S+
Sbjct: 67 DFRGPPGLFKPGDWTCTVCGNVNWERRQECNICKNAKPGMPGADERRDGVAGGFNERQERVASAKAEIGEDGYDDFGMRKKKLNASKTQREVAALARLQQSY 168
BLAST of mRNA_E-siliculosus-1a_F_contig1099.676.1 vs. uniprot
Match: D0NJ98_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NJ98_PHYIT) HSP 1 Score: 131 bits (330), Expect = 7.160e-30 Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 3 Query: 393 DFRGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLATTDEAREGLGGGFNERQDRASVATVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSF 698
D RGP GLF+ GDWTC CGNVNWERR CN C + KP + DE R+G GGGFNERQ+R + A EV EDG+DDFG +K K +A K +E AALARL++S+
Sbjct: 218 DSRGPPGLFQPGDWTCNTCGNVNWERRNECNMCKSSKPGMIGLDEKRDGAGGGFNERQERVASAKTEVGEDGYDDFGMRKKKVKASKTEREAAALARLQQSY 319
BLAST of mRNA_E-siliculosus-1a_F_contig1099.676.1 vs. uniprot
Match: H3HB99_PHYRM (RanBP2-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB99_PHYRM) HSP 1 Score: 129 bits (324), Expect = 5.560e-29 Identity = 73/148 (49.32%), Postives = 90/148 (60.81%), Query Frame = 3 Query: 339 PVPPAGGGGKPLPKKEQKDFRGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLATTDEAREGLGGGFNERQDRASVATVEVDEDGFDDFG-RKKI--------------------KARADKKAKEDAALARLRKSF--GGGIL 713
P P GG KP P D RGP GLF+ GDWTC CGNVNWERR CN C + KP ++ DE R+G GGGFNERQ+RA+ A E+D+DG+DDFG RKK+ K +A K +E AALARL++S+ GG I+
Sbjct: 287 PRPEGLGGEKPKPTSA--DVRGPPGLFQPGDWTCNTCGNVNWERRNECNMCKSSKPGMSGLDEKRDGAGGGFNERQERAASAKAEIDDDGYDDFGMRKKVQDLQRTILDKELTELLYLLQKVKASKAEREAAALARLQQSYRCGGEIV 432
BLAST of mRNA_E-siliculosus-1a_F_contig1099.676.1 vs. uniprot
Match: A0A835YR36_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR36_9STRA) HSP 1 Score: 113 bits (283), Expect = 2.080e-23 Identity = 60/98 (61.22%), Postives = 70/98 (71.43%), Query Frame = 3 Query: 423 KGDWTCTACGNVNWERRATCNKCNNPKP-NLATTDEAREGLGGGFNERQDRASVATVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSFGGGIL 713
+ DWTC CGNVNW R CN C KP L DE R+GLGGGFNERQDRAS+ATVEV EDG+DDFGRK KA+AD++ E AAL RL ++F G +
Sbjct: 150 QADWTCD-CGNVNWGWRQECNLCQASKPATLVGPDEVRDGLGGGFNERQDRASLATVEVGEDGYDDFGRKIKKAKADRRVLELAALNRLEQAFSSGAM 246 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1099.676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1099.676.1 >prot_E-siliculosus-1a_F_contig1099.676.1 ID=prot_E-siliculosus-1a_F_contig1099.676.1|Name=mRNA_E-siliculosus-1a_F_contig1099.676.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=306bp MSEGEAYDPAAAAVPAGGRGDGGGRGRGRGRGRGGGGVAIAGIAELDASMback to top mRNA from alignment at E-siliculosus-1a_F_contig1099:24510..28091+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1099.676.1 ID=mRNA_E-siliculosus-1a_F_contig1099.676.1|Name=mRNA_E-siliculosus-1a_F_contig1099.676.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3582bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1099:24510..28091+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1099:24510..28091+ >mRNA_E-siliculosus-1a_F_contig1099.676.1 ID=mRNA_E-siliculosus-1a_F_contig1099.676.1|Name=mRNA_E-siliculosus-1a_F_contig1099.676.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1836bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1099:24510..28091+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |