mRNA_E-siliculosus-1a_F_contig1097.668.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: D8LGB2_ECTSI (Peroxisomal membrane protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB2_ECTSI) HSP 1 Score: 405 bits (1040), Expect = 3.020e-142 Identity = 202/210 (96.19%), Postives = 203/210 (96.67%), Query Frame = 2 Query: 77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSVKSALVPADAGNIERFAEDAKED 706
MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLD+KLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQ IGYNIFLSFLGNKKADDDSVKSALVPADAGNIERFAEDAKED
Sbjct: 1 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDAKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQ-------IGYNIFLSFLGNKKADDDSVKSALVPADAGNIERFAEDAKED 203
BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A835Z5E2_9STRA (Peroxisomal membrane protein-related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E2_9STRA) HSP 1 Score: 318 bits (815), Expect = 3.160e-108 Identity = 154/188 (81.91%), Postives = 170/188 (90.43%), Query Frame = 2 Query: 77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSV 640
M+GIWAAYN+AL AQPLLVKA TS TGFTVGDILAQKFI+ + +YDFMRT+RLG+FGALVHGPTGH+FYGMLDSKLPGT PMTVA+KVAIDQTIWNPIFG+MFF+YLGL EGKSVD I +KIK DLATAVMGSWTVWIPAHTINFKFVPTSQRLLYIN+IQ IGYN+FLSFLGNKKA +D+V
Sbjct: 1 MAGIWAAYNRALTAQPLLVKACTSLTGFTVGDILAQKFINKDAEYDFMRTVRLGSFGALVHGPTGHWFYGMLDSKLPGTAPMTVATKVAIDQTIWNPIFGIMFFSYLGLTEGKSVDQIYQKIKADLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINSIQ-------IGYNVFLSFLGNKKAPEDAV 181
BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A7S2RA66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA66_9STRA) HSP 1 Score: 282 bits (722), Expect = 5.170e-94 Identity = 134/181 (74.03%), Postives = 148/181 (81.77%), Query Frame = 2 Query: 89 WAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADD 631
WAAYN+ L QPLL KA+TS TGFT+GD+LAQ F+ ++ YD MRT+RLG+FG LVHG TGHYFYG LDSKLPGTKP+TVASKV IDQ WNP FG+MFFTYLGLAEGKS DI KKIK DL TAVMGSW VW+PAHTINF F+P SQRLLYIN+IQ IGYNIFLSFLGNKK DD
Sbjct: 14 WAAYNRLLETQPLLTKALTSMTGFTLGDVLAQNFVDKKEKYDVMRTVRLGSFGLLVHGTTGHYFYGFLDSKLPGTKPVTVASKVLIDQVFWNPCFGIMFFTYLGLAEGKSFADIMKKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQ-------IGYNIFLSFLGNKKVDD 187
BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A6S8ZBW9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZBW9_9STRA) HSP 1 Score: 280 bits (716), Expect = 3.440e-93 Identity = 133/190 (70.00%), Postives = 156/190 (82.11%), Query Frame = 2 Query: 77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDD-YDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSVK 643
MSGIWA YNK L AQPLL KA+TS TGFT+GDILAQKF++ + + YD MRT+RLG+FG L+HG TGHYFYGMLDSK+PGTKP+TVA+KVAIDQTIWNPIFG MFF YL + EGK+ D K+K+DL TAVMGSW VW+PAHTINF F+P SQRLLYIN+IQ IGYN+FLSFLGNKK +++ K
Sbjct: 1 MSGIWARYNKMLDAQPLLTKALTSLTGFTIGDILAQKFVNEDGNPYDVMRTIRLGSFGFLIHGTTGHYFYGMLDSKMPGTKPITVATKVAIDQTIWNPIFGCMFFGYLNVMEGKTFQDYTNKLKSDLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQ-------IGYNVFLSFLGNKKVEEEPKK 183
BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A6S9LPN5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LPN5_HETAK) HSP 1 Score: 280 bits (715), Expect = 4.570e-93 Identity = 134/189 (70.90%), Postives = 151/189 (79.89%), Query Frame = 2 Query: 77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSVK 643
MSG+WA YN L AQPL KA+TS TGFT+GDILAQKFI+PEDDYD RT+R+G FG L HGPTGHYFYG LD KLPGT TVA+KVAIDQ IWNPIFGV FF++LG AEGKS +I KIKNDL TAV GSWTVW+PAH INF+F+P+SQRLLYIN+IQ IGYN+FLSFLGNKK D + K
Sbjct: 1 MSGLWAKYNAFLEAQPLACKALTSLTGFTIGDILAQKFINPEDDYDVARTVRMGAFGMLFHGPTGHYFYGFLDGKLPGTATTTVATKVAIDQLIWNPIFGVCFFSFLGAAEGKSGGEIVDKIKNDLMTAVTGSWTVWVPAHIINFRFIPSSQRLLYINSIQ-------IGYNMFLSFLGNKKVDGEEEK 182
BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A7S2V4A9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A9_9STRA) HSP 1 Score: 280 bits (715), Expect = 4.890e-93 Identity = 135/189 (71.43%), Postives = 153/189 (80.95%), Query Frame = 2 Query: 77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSVK 643
M+ +WA YN+ L AQP+L KA+TS TGFT+GDILAQKFI+PE DYD MRT+RLG+FG L HGP+GHYFYG LDSK+ GT VA+KVAIDQ WNPIFG +FFTYLGLAEGKS +I KIK+DL TAVMGSWTVW+PAH INFKFVP+SQRLLYINTIQ IGYNIFLSFLGNK AD+ K
Sbjct: 1 MAKLWAKYNQFLDAQPILCKALTSLTGFTIGDILAQKFINPEADYDVMRTIRLGSFGLLFHGPSGHYFYGFLDSKIVGTSTQAVATKVAIDQLFWNPIFGTVFFTYLGLAEGKSGGEIVNKIKSDLKTAVMGSWTVWVPAHIINFKFVPSSQRLLYINTIQ-------IGYNIFLSFLGNKSADEPEKK 182
BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A448YW01_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YW01_9STRA) HSP 1 Score: 279 bits (713), Expect = 8.300e-93 Identity = 136/186 (73.12%), Postives = 149/186 (80.11%), Query Frame = 2 Query: 77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDD-YDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADD 631
M+ IWA YNK L QPLL K +TS TGFTVGDILAQKFI P D YD MRT+RLG+FG L HG TGHYFYGMLDSK+PGTKP+TVASKV IDQTIWNPIFG FF +L AEGK+ DD KK+ +DL TAVMGSW VW+PAHTINF F+P SQRLLYINTIQ IGYNIFLSFLGNKKAD+
Sbjct: 1 MASIWARYNKLLDTQPLLTKCLTSLTGFTVGDILAQKFIEPSDKPYDIMRTIRLGSFGFLFHGSTGHYFYGMLDSKMPGTKPVTVASKVLIDQTIWNPIFGCCFFGFLNFAEGKTWDDYTKKLNSDLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINTIQ-------IGYNIFLSFLGNKKADE 179
BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A7S2LHQ9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHQ9_9STRA) HSP 1 Score: 278 bits (712), Expect = 1.600e-92 Identity = 135/188 (71.81%), Postives = 152/188 (80.85%), Query Frame = 2 Query: 83 GIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDD-YDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSVK 643
GIW+ YN L AQPLLVKAMTS TGFT+GDILAQ F++ + YD MRT+RLG+FG LVHG TGHYFYG LDSKLPGTKP TVASKV IDQTIWNPIFG+MFF YL L EGKS DD +KKI++DL TAVMGSW VW+PAHTINF F+P SQRLLYIN+IQ IGYN+FLSFLGNKK D + +
Sbjct: 2 GIWSRYNALLEAQPLLVKAMTSLTGFTIGDILAQNFVNQDGQAYDPMRTIRLGSFGFLVHGTTGHYFYGFLDSKLPGTKPQTVASKVLIDQTIWNPIFGLMFFGYLNLVEGKSFDDYKKKIQSDLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQ-------IGYNVFLSFLGNKKVDGEEAE 182
BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A1Z5JSB9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSB9_FISSO) HSP 1 Score: 278 bits (711), Expect = 1.620e-92 Identity = 133/185 (71.89%), Postives = 149/185 (80.54%), Query Frame = 2 Query: 77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDD-YDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKAD 628
MSG+WA YNK L AQPLL KA+TS TGFT+GD+LAQKF+ P D YD MRT+RLG+FG L+HG TGHYFYG LD KLPGT PMTVA+KVAIDQTIWNPIFG+MFF YL EGKS +D KIK DL TAVMGSW VW+PAHTINF F+P SQRLLYIN+IQ IGYN+FLSFLGNKK +
Sbjct: 1 MSGLWARYNKMLDAQPLLTKALTSLTGFTLGDVLAQKFVEPTDKPYDLMRTVRLGSFGFLIHGTTGHYFYGFLDGKLPGTAPMTVATKVAIDQTIWNPIFGLMFFGYLNFVEGKSFEDYTNKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQ-------IGYNVFLSFLGNKKVE 178
BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: W7TJ93_9STRA (Mpv17-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJ93_9STRA) HSP 1 Score: 277 bits (709), Expect = 4.910e-92 Identity = 133/191 (69.63%), Postives = 160/191 (83.77%), Query Frame = 2 Query: 86 IWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDD--YDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADD-DSVKSA 649
+W+ YN AL PLL+KA+TS TGFT+GD+LAQKF++P+++ YD MRT+RLG+FG LVHGPTGH+FYG LD ++PGT TVA+KVAIDQ +WNP FGVMFF+YLGLAEGKS DIQ KIKNDLATAV+GSWTVWIPAH INF+FVP++QRLLYIN+IQ IGYNIFLSFLGNKK DD + +K+A
Sbjct: 5 LWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQ-------IGYNIFLSFLGNKKVDDTEELKAA 188 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1097.668.1 >prot_E-siliculosus-1a_F_contig1097.668.1 ID=prot_E-siliculosus-1a_F_contig1097.668.1|Name=mRNA_E-siliculosus-1a_F_contig1097.668.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=211bp MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTback to top mRNA from alignment at E-siliculosus-1a_F_contig1097:27694..31883+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1097.668.1 ID=mRNA_E-siliculosus-1a_F_contig1097.668.1|Name=mRNA_E-siliculosus-1a_F_contig1097.668.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4190bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1097:27694..31883+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1097:27694..31883+ >mRNA_E-siliculosus-1a_F_contig1097.668.1 ID=mRNA_E-siliculosus-1a_F_contig1097.668.1|Name=mRNA_E-siliculosus-1a_F_contig1097.668.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1266bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1097:27694..31883+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |