mRNA_E-siliculosus-1a_F_contig1097.667.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1097.667.1 vs. uniprot
Match: D8LGB3_ECTSI (Hypothetical leucine rich repeat and MORN motif protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB3_ECTSI) HSP 1 Score: 1371 bits (3549), Expect = 0.000e+0 Identity = 780/845 (92.31%), Postives = 791/845 (93.61%), Query Frame = 1 Query: 1 IRMPVRHRSGSFGAEDEQPELWLSGSKASRNGWVRVSDATERVFYHSIESGKITLERPAEFGDDDPAWADGTELCMYRGKCSRCKEFIPRSETGPVALAADHGQVALSFLLCRPCLNWLVESAKLEREGLPQLGPCPPXXXXXXXXFXXXXXXXXXXXGKTGKXXXXXXXXPRPTRKQLMKVYKDVDLRGMGDLLSSSRLARSYAKCMYSCLSEQSLRPGRFDDQRSECLKAKAAAVVAGEGRRRAAREIQMKLRCISQHKSNGAGDYLCWFSPEGRVDYFGQTSGGRAHGWGLAEYQDGSWCLSTFSHGQQHTHPGGKLSTIAYGNGIRYHGEMKQGKTNGMGTKTWPDESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFIDARGRKTVGNFRDDAFGKAEEDGIVAPTKADITVESGQHDPETLLDLAISNLAVVTDRQPALNKASVLMAKMPLHLHPLVAEAFASSARALTPGFRRVLPSFAWRTLSEVRLCNAPLLPADTAKLSFFLEAIPNLTKLATIACKLIGEAVGPIADAIATSQTLQEVDLSWNPIRRGGARLIIAALETSAHLRRLNLAGCQLGVDGGQAMIAAIGSGRDKFRLLDLDLANNSLGAGCGDSLAVALRRNKTLTRLSLRANGLGPEGGTALAAGLASNCGILKEVVVADNRLGPRVATLVAATMRGGTSECLRGFGYRPAPTLSQLPQQPSDHLHDTAPPFEKGADKDQSIPRSSRPSQRYSGENSCGSNPRAAAASMRESLSSLQRTSALQPSTARGRLNSTAPTTTVGTAGGTTGPRTNDLEVLARNNSSPITATAAIEEDLGRPQTAGTASG 2535
++ PVR RSGSFGAEDEQPELWLSGSKASRNGWVRVSDATERVFYHSIESGKITLERPAEFGDDDPAWADGTELCMYRGKCSRCKEFIPRSETGPVALAAD GQVALSFLLCRPCLNWL+ESAKLEREGLP L PCP XXXXXXXXFXXXXXXXXXXXGKTG XXXXXXXXPRPTRKQLMKVYKDVD RGMGDLLSSSRLARSYAKCMYSCLSEQSLRPGRFDDQRSECLKAKAAAVVAGEGRRRAAREIQMKLRCISQHKSNGAGDYLCWFSPEGRVDYFGQTSGGRAHGWGLAEYQDGSWCLSTFSHGQQHT PGGKLSTIAYGNGIRYHGEMKQGK NGMGTKTWPDESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VFIDARG+KTVGNFRDDAFGKAEEDGIVAP KADITVESGQHDPETLLDLAISNLAVVTDRQP+LNKASVLMAKMPLHLHPLVAEAFASSARALTPGFR VLPSFAWRTLSE LATIACKLIGEAVGPIADAIATSQTLQEVDLSWNPIRRGGARLIIAALETSAHLRRLNLAGCQLGVDGGQAMIAAIGSGRDKFRL+DLDLA+NSLGAGCGD LAVALRRNKTLTRLS+RANGLGPEGGTALAAGLASNCGILK+VVVADNRLGPRVATLVAATMRGGTSECLRGFGYRPAP LS+L QQPSDHLH TAPPFEKGAD DQSIP S PSQRYSGENSCGSNPR AAASMRESLSSLQRTSAL+PSTARGRLNSTAPTTTVG AGGT GP TNDLEVL RNNSSPITATAAIEEDLGRPQTAGTASG
Sbjct: 1 MQRPVRQRSGSFGAEDEQPELWLSGSKASRNGWVRVSDATERVFYHSIESGKITLERPAEFGDDDPAWADGTELCMYRGKCSRCKEFIPRSETGPVALAADRGQVALSFLLCRPCLNWLMESAKLEREGLPPLSPCPXXXXXXXXXFXXXXXXXXXXXGKTGXXXXXXXXXPRPTRKQLMKVYKDVDPRGMGDLLSSSRLARSYAKCMYSCLSEQSLRPGRFDDQRSECLKAKAAAVVAGEGRRRAAREIQMKLRCISQHKSNGAGDYLCWFSPEGRVDYFGQTSGGRAHGWGLAEYQDGSWCLSTFSHGQQHTPPGGKLSTIAYGNGIRYHGEMKQGKPNGMGTKTWPDESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFIDARGQKTVGNFRDDAFGKAEEDGIVAPAKADITVESGQHDPETLLDLAISNLAVVTDRQPSLNKASVLMAKMPLHLHPLVAEAFASSARALTPGFRSVLPSFAWRTLSE----------------------------LATIACKLIGEAVGPIADAIATSQTLQEVDLSWNPIRRGGARLIIAALETSAHLRRLNLAGCQLGVDGGQAMIAAIGSGRDKFRLVDLDLASNSLGAGCGDPLAVALRRNKTLTRLSVRANGLGPEGGTALAAGLASNCGILKQVVVADNRLGPRVATLVAATMRGGTSECLRGFGYRPAPALSELQQQPSDHLHATAPPFEKGADTDQSIPGSPGPSQRYSGENSCGSNPRVAAASMRESLSSLQRTSALEPSTARGRLNSTAPTTTVGAAGGTMGPGTNDLEVLTRNNSSPITATAAIEEDLGRPQTAGTASG 817
BLAST of mRNA_E-siliculosus-1a_F_contig1097.667.1 vs. uniprot
Match: A0A6H5K4D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D7_9PHAE) HSP 1 Score: 1296 bits (3354), Expect = 0.000e+0 Identity = 735/907 (81.04%), Postives = 746/907 (82.25%), Query Frame = 1 Query: 13 VRHRSGSFGAEDEQPELWLSGSKASRNGWVRVSDATERVFYHSIESGKITLERPAEFGDDDPAWADGTELCMYRGKCSRCKEFIPRSETGPVALAADHGQVALSFLLCRPCLNWLVESAKLEREGLPQLGPCPPXXXXXXXXFXXXXXXXXXXXGKTGKXXXXXXXXPRPTRKQLMKVYKDVDLRGMGDLLSSSRLARSYAKCMYSCLSEQSLRPGRFDDQRSECLKAKAAAVVAGEGRRRAAREIQMKLRCISQHKSNGAGDYLCWFSPEGRVDYFGQTSGGRAHGWGLAEYQDGSWCLSTFSHGQQHTHPGGKLSTIAYGNGIRYHGEMKQGKTNGMGTKTWPDESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFIDARGRKTVGNFRDDAFGKAEEDGIVAPTKADITVESGQHDPETLLDLAISNLAVVTDRQPALNKASVLMAKMPLHLHPLVAEAFASSARALTPGFRRVLPSFAWRTLSEV------------------------------------------------------------------RLCNAPLLPADTAKLSFFLEAIPNLTKLATIACKLIGEAVGPIADAIATSQTLQEVDLSWNPIRRGGARLIIAALETSAHLRRLNLAGCQLGVDGGQAMIAAIGSGRDKFRLLDLDLANNSLGAGCGDSLAVALRRNKTLTRLSLRANGLGPEGGTALAAGLASNCGILKEVVVADNRLGPRVATLVAATMRGGTSECLRGFGYRPAPTLSQLPQQPSDHLHDTAPPFEKGADKDQSIPRSSRPSQRYSGENSCGSNPRAAAASMRESLSSLQRTSALQPSTARGRLNSTAPTTTVGTAGGTTGPRTNDLEVLARNNSSPITATAAIEEDLGRPQTAGTASG 2535
VRH SGSF AEDEQPELWLSGSKASRNGWVRVSD+TERVFYHSI+SGKITLERPAEFGDDDP WADGTELCMYRGKCSRCKEFIPRSETGPVALAADHGQVALSFLLCRPCLNWLVE + E L G GK PRPTRKQLMKVYKDVDLRG+GDLLSSSRLARSYAKCMYSCLSEQSLRPGRFDDQRSECLKAKAAAVVAGEGRRRAAREIQMKLRCISQHKSNGAGDYLCWFSPEGRVDYFGQTSGGRAHGWGLAEYQDGSWCL RYHGEMKQGK NG GTKTWPDES XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VFIDARG+KTVGNFRD+AFGKAEEDGIVAPTKADITVESGQHDPETLLDLAISNLAVVTDRQPAL KASVLMAKMPLHLHPLVAEAFA SARALTPGFRRVLPSFAWRTLSEV RLCNAPLLPADTAKLSFFLEAIPNL KLATIACKLIGEAVGPIADAIATSQTL+EVDLSWNPIRRGGARLIIAALETSAHLRRLNLAGCQLGVDGGQAMIAAIGSGRDKFRLLDLDLANNSLGAGCGDSLAVALRRNKTLTRLSLRANGLGPEGGT+LAAGLASNCG+LKEVVVADNRLGPRVATLVAATMRGGTSECLRGFGYRPAPTLSQ QPSDHLHDTAPPFEKGAD DQSIPR SRP QRYSGENSCGSNPR AAAS+RESLSSLQRTSAL+P TARGRLNSTA TTVG A GT GP TNDLEVLARNNSSPITATAAIEEDLGRPQTAGTASG
Sbjct: 4 VRHPSGSFCAEDEQPELWLSGSKASRNGWVRVSDSTERVFYHSIQSGKITLERPAEFGDDDPVWADGTELCMYRGKCSRCKEFIPRSETGPVALAADHGQVALSFLLCRPCLNWLVE--RWENASL----------TIVKLLCEERRVCDKQAVGDYGKSAAGSTPPPRPTRKQLMKVYKDVDLRGVGDLLSSSRLARSYAKCMYSCLSEQSLRPGRFDDQRSECLKAKAAAVVAGEGRRRAAREIQMKLRCISQHKSNGAGDYLCWFSPEGRVDYFGQTSGGRAHGWGLAEYQDGSWCL-------------------------RYHGEMKQGKPNGKGTKTWPDESEYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFIDARGQKTVGNFRDNAFGKAEEDGIVAPTKADITVESGQHDPETLLDLAISNLAVVTDRQPALTKASVLMAKMPLHLHPLVAEAFALSARALTPGFRRVLPSFAWRTLSEVGTQQALSVRKEGLGWDNTQPSSSSQEAGTYRSRSECPWRCRGATTVVAAMKTAGKEKSTGRRVGGVRLCNAPLLPADTAKLSFFLEAIPNLAKLATIACKLIGEAVGPIADAIATSQTLREVDLSWNPIRRGGARLIIAALETSAHLRRLNLAGCQLGVDGGQAMIAAIGSGRDKFRLLDLDLANNSLGAGCGDSLAVALRRNKTLTRLSLRANGLGPEGGTSLAAGLASNCGVLKEVVVADNRLGPRVATLVAATMRGGTSECLRGFGYRPAPTLSQPQPQPSDHLHDTAPPFEKGADNDQSIPRPSRPLQRYSGENSCGSNPRVAAASVRESLSSLQRTSALEPPTARGRLNSTALPTTVGAAEGTMGPGTNDLEVLARNNSSPITATAAIEEDLGRPQTAGTASG 873
BLAST of mRNA_E-siliculosus-1a_F_contig1097.667.1 vs. uniprot
Match: A0A835Z2U1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U1_9STRA) HSP 1 Score: 220 bits (560), Expect = 7.800e-58 Identity = 225/691 (32.56%), Postives = 309/691 (44.72%), Query Frame = 1 Query: 58 ELWLSGSKASRNGWVRVSDATER--VFYHSIESGKITLERPAEFGDDDPAWADGTELCMYRGKCSRCKEFIPRSETGPVALAADHGQVALSFLLCRPCLNWLVESA-KLEREGLPQLGPCPPXXXXXXXXFXXXXXXXXXXXGKTGKXXXXXXXXPRPTRKQLMKVYKDVDLRGMGDLLSSSRLARSYAKCMYSCLSEQSLRPGRFDDQRSECLKAKAAAVVAGEGRRRAAREIQMKLRCISQHKSNGAGDYLCWFSPEGR-VDYFGQTSGGRAHGWGLAEYQDGSWCLSTFSHGQQHTHPGGKLSTIAYGNGIRYHGEMKQGKTNGMGTKTWPDESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFIDARGRKTVGNFRDDAFGKAEEDGIVAPTKADITVESGQHDPETLLDLAISNLAVVTDRQPALNKASVLMAKMPLHLHPLVAEAFASSARALTPGFRRVLPSFAWRTLSEVRLCNAPLLPADTAKLSFFLEAIPNLTKLATIACKLIGEAVGPIADAIATSQTLQEVDLSWNPIRRGGARLIIAALETSAHLRRLNLAGCQLGVDGGQAMIAAIGSGRDKFRLLDLDLANNSLGAGCGDSLAVALRRNKTLTRLSLRANGLGPEGGTALAAGLASNCGILKEVVVADNRLGPRVATLVAATMRGGTSECLRGFG 2118
EL+++G S GWV V D FY + S +++LE+P + + WADGT + RG+C RC + E+GP+ +AD V +++LCRPCL WLV A + + LPQ K G T Q ++ ++ GDLL SS L + Y+KC++ E+ R R +Q + A A AV GE RR+ R M+ RC++ G GDY+CW +G V+YFG G RA G G AEYQDGSWC F GQ HT G K +T + NG Y G+M G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D + E + + +++ G L +LA + LA P+L+ A + +P HL VA A + +A+ ++P R +P +AW+ L +LC LT+ C+L +A IA + +L EVD+SWN IR GA ++ A S L L +AGC LG + + +NCG L+ VVVADN++G RVA ++A+MRGG ++ + GFG
Sbjct: 25 ELYVAGICVSHKGWVFVDDGCRERPPFYWHVISHQVSLEQPDKDCEYVKRWADGTPVYFNRGRCCRCCQTEAIRESGPLVFSADSRAVVSAYVLCRPCLAWLVARAGEKHPQALPQ-------------------------KDKRGPKVS--------TEAQRLRWSPEI-----GDLLVSSALFKEYSKCLFFHTFERYSRTSRAAEQDASAAIAHAEAVRCGEARRQQNRARAMRRRCVTDF-GRGTGDYMCWREHDGSLVEYFGDIIGARATGVGYAEYQDGSWCEGPFLEGQPHTSKGHKAATWHWPNGRHYIGQMANGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGHSDEYELQLQIEDDRKAVSLAPGDLIVPPLSELACTALARQIAALPSLHSALHVKRCLPAHLLSQVAAALSQTAQDMSPPLRLTVPQWAWQELPAWQLCAV------------------RLTR-----CRLNSACAEVLAGMIAQAPSLLEVDVSWNLIRASGALALMDAAGASTSLTALGMAGCGLGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXMLANCGKLRHVVVADNKVGARVAVAISASMRGGAADAIAGFG 650
BLAST of mRNA_E-siliculosus-1a_F_contig1097.667.1 vs. uniprot
Match: UPI0003315F3A (tonsoku-like protein n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI0003315F3A) HSP 1 Score: 59.7 bits (143), Expect = 2.720e-5 Identity = 49/147 (33.33%), Postives = 71/147 (48.30%), Query Frame = 1 Query: 1633 PIADAIATSQTLQEVDLSWNPIRRGGARLIIAALETSAHLRRLNLAGCQLGVDGGQAMIAAIGSGRDKFRLLDLDLANNSLGAGCGDSLAVALRRNKTLTRLSLRANGLGPEGGTALAAGLAS---NCGILKEVVVADNRLGPRVAT 2064
P+ A+ TL+E+ LS N + ++A L T L L+L+ LG +G + + + L +LDL+ N LG GCG +LA LR L+ L L+A GLGP A L S + LK + ++ N LGP T
Sbjct: 997 PLLRALKLHATLRELRLSGNRLGDTCTPELLATLGTVPSLTLLDLSSNHLGPEGLRQLADGLRGMASSQSLEELDLSMNPLGDGCGPALASILRACPALSTLHLQACGLGPHLFLRHQAALGSAFQDAQCLKTLSLSYNALGPTALT 1143 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1097.667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1097.667.1 >prot_E-siliculosus-1a_F_contig1097.667.1 ID=prot_E-siliculosus-1a_F_contig1097.667.1|Name=mRNA_E-siliculosus-1a_F_contig1097.667.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=844bp MPVRHRSGSFGAEDEQPELWLSGSKASRNGWVRVSDATERVFYHSIESGKback to top mRNA from alignment at E-siliculosus-1a_F_contig1097:19095..26973+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1097.667.1 ID=mRNA_E-siliculosus-1a_F_contig1097.667.1|Name=mRNA_E-siliculosus-1a_F_contig1097.667.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7879bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1097:19095..26973+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1097:19095..26973+ >mRNA_E-siliculosus-1a_F_contig1097.667.1 ID=mRNA_E-siliculosus-1a_F_contig1097.667.1|Name=mRNA_E-siliculosus-1a_F_contig1097.667.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5064bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1097:19095..26973+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |