mRNA_E-siliculosus-1a_F_contig1096.663.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1096.663.1
Unique NamemRNA_E-siliculosus-1a_F_contig1096.663.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1096.663.1 vs. uniprot
Match: D8LCA4_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCA4_ECTSI)

HSP 1 Score: 930 bits (2404), Expect = 0.000e+0
Identity = 493/543 (90.79%), Postives = 498/543 (91.71%), Query Frame = 3 
Query:   33 MAFASNLLASVSFLLLSPQLWDLSVAFVVVYPPSDHGGASHRRFSERAAAAASQWARAPTTAMHADSPGRTRQGSRCRCHPPSFDSSCSSGSSSSRERR-ASEGRVVGGAGRGGRTRRRSRQRLLQARPGNEAEPPEREVIDAEFSDDFSKIVEADRASKRKKPREEKPAPRKKKAVKTAAAKKGAASTPAXXXXXXXFAGSGFASLEEALASGEFADLSGGRGSCLKRVDEEGFETDGNPPKGSKIKVHYKMKVVGGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEGWLDLAAEYNAVPGKVETDGELRERWSEDLADGTSPMKDEAGLNKKLQAEMSAKTSTTPENTDHRGKKIYDLESKEAREIMAKQKVQGYTPDFGYVERANYLDLYIPVPAGTRAKDVTVEIHPDRMLVVVKGTGVVTQGHFQGKVALDGCHWLMSDLSLDPPGSTALGTQDDEVRQGPVYRGETCVQVFLEKRKPFDTLWESVYRPREDGD 1658
            MAFASN+LASVS LLLSPQLW LSVAFVVV+PPSDHGGASH RFSERAAAAASQWARAPTTA+HADSPGRTRQGSRCRCHPPSFDSS             ASEGRVVGGAGR       SRQRLLQARPGNE EPPEREVIDAEFSDDFSKIVEADRASKRKKPREEKPA               AASTPAXXXXXXX AGSGFASLEEALASGEFADLSGGRGSCLKRVDE+GFETDGNPPKGSKIKVHYKMKVV GENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELE WLDLAAEYNAVPGKVETD ELRERWSEDLADGTSPMKDEAGLNKKLQAEMSAK S TPENTDHRGKKIYDLESKEAREIMAKQKVQGYTPDFGYVERANYLDLYIPVPAGTRAKDVTVEIHPDRMLVVVKGTGVVTQGHFQGKVALDGCHWLMSDLSLDPPGSTALGTQDDEVRQGPVYRGETCVQVFLEKRKPFDTLWE+VYRPREDGD
Sbjct:    1 MAFASNVLASVSLLLLSPQLWHLSVAFVVVHPPSDHGGASHGRFSERAAAAASQWARAPTTAVHADSPGRTRQGSRCRCHPPSFDSSSXXXXXXXXXXXXASEGRVVGGAGRXXXXXXXSRQRLLQARPGNEVEPPEREVIDAEFSDDFSKIVEADRASKRKKPREEKPAXXXXXXXXXXXXXXXAASTPAXXXXXXXXAGSGFASLEEALASGEFADLSGGRGSCLKRVDEDGFETDGNPPKGSKIKVHYKMKVVDGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEDWLDLAAEYNAVPGKVETDEELRERWSEDLADGTSPMKDEAGLNKKLQAEMSAKASATPENTDHRGKKIYDLESKEAREIMAKQKVQGYTPDFGYVERANYLDLYIPVPAGTRAKDVTVEIHPDRMLVVVKGTGVVTQGHFQGKVALDGCHWLMSDLSLDPPGSTALGTQDDEVRQGPVYRGETCVQVFLEKRKPFDTLWENVYRPREDGD 543
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1096.663.1 vs. uniprot
Match: A0A835YYM1_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM1_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.880e-39
Identity = 100/294 (34.01%), Postives = 145/294 (49.32%), Query Frame = 3 
Query:  885 GWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEGWLDLAAEYNAVPGKVETDGELRERWSEDLADGTSPMKDEAGLNKKLQAEMSAKTSTTPENTDHRGKKIYDLESKEAREIMAKQKVQGYTPDFGYVERANYLDLYIPVPAGTRAK--------------------------------------DVTVEIHPDRMLVVVKGTG-----VVTQGHFQGKVALDGCHWLMSDLSLDPPGSTALGTQDDEVRQGPVYRGETCVQVFLEKRKPFDTLWESVY 1637
            GWD A+  M +GE A++IC PQYA+G AGAPP+IPP A++E  LEL  W D+AA Y+      ET  E  ERW +++  GTSP+K++ G       +   +T T  E T  +GK + D+   + R   A+Q V G    + Y+E+  +LDLY+ VP GTRA                                       DV  +I P R+ + +          + +G   G+VALDG +W+MS+++ +     A      +V  G   RG   VQV+LEK  P DT+W  V+
Sbjct:    3 GWDVAVQTMEKGERASIICSPQYAYGEAGAPPKIPPGASLECELELLDWEDVAARYSEYARPGETHEERMERWEQEIESGTSPIKEDVG------PQPGIRTVTADEVT--KGKMV-DVNDPQVRRAAARQLVCGQGEGYTYLEKGAFLDLYVTVPEGTRAXXXXXXXXXXXXXXXXXAANEXXXXXXXXXXXXXXXXXADVLCDIAPRRLSLRITAQPDAPPLTILEGTLHGRVALDGSYWVMSEVAPE-----AYDELRSDVGFGLTARG-AFVQVYLEKLPPDDTIWPDVF 281
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1096.663.1 vs. uniprot
Match: A0A6V4G211_9EUKA (Peptidylprolyl isomerase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6V4G211_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 8.370e-23
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:  681 DLSGGRGSCLKRVDEEGFETDGNPPKGSKIKVHYKMKVVGGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEGW 1031
            D+SG  G C K + +EG    G PP GSK+KVHY   ++ G    SS  DR   FEF +G+   +   GWD  ++ MH+GEVA L C   YA+GA+G PP IPPNAT++  +EL GW
Sbjct:   58 DISG-EGGCFKSIQKEGKSAGGTPPPGSKVKVHYVGTLLDGSKFDSS-RDRPGFFEFTIGQ--QQVIKGWDVGVATMHKGEVAVLTCRADYAYGASGHPPTIPPNATLKFEVELFGW 170
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BLAST of mRNA_E-siliculosus-1a_F_contig1096.663.1 vs. uniprot
Match: A0A8J6CE85_DIALT (Peptidylprolyl isomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CE85_DIALT)

HSP 1 Score: 110 bits (276), Expect = 2.500e-21
Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 3 
Query:  660 LASGEFADLSGGRGSCLKRVDEEGFETDGNPPKGSKIKVHYKMKVVGGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEGW 1031
            +A  E  D+SG  G CLKRV E G  + G PP GS++KVHY   +    +   S  DR   FEF +G+   +   GWD  +++MH+GE A L C P+YA+GA G+PP+IPP AT++  +EL  W
Sbjct:    1 MADSEAIDVSGDAG-CLKRVLEAGDPSAGTPPAGSRVKVHYVGTLAADGSKFDSSRDRGTEFEFVIGQ--GQVIKGWDVGVASMHKGEKAVLTCTPEYAYGARGSPPKIPPGATLDFEVELFSW 121
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1096.663.1 vs. uniprot
Match: A0A0L7KRI6_9NEOP (Peptidylprolyl isomerase (Fragment) n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7KRI6_9NEOP)

HSP 1 Score: 100 bits (248), Expect = 3.530e-21
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 3 
Query:  681 DLSGGRGSCLKRVDEEGFETDGNPPKGSKIKVHYKMKVVGGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEGW 1031
            D+SG RG  LKR+ +EG  +D  P  G ++ VHY   +V G    SS +DR +PFEF+LG+        WD  ++ M +GEV  L C P+YA+GAAG+PP+IPPN+ ++  +E+  W
Sbjct:    8 DISGDRG-VLKRIIQEGEGSD-TPNPGCQVTVHYTGTLVDGSKFDSS-KDRNEPFEFQLGK-------AWDVGVATMKKGEVCVLTCAPEYAYGAAGSPPKIPPNSILQFEIEMIDW 114
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1096.663.1 vs. uniprot
Match: A0A7S4EZ74_CHRCT (Peptidylprolyl isomerase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZ74_CHRCT)

HSP 1 Score: 100 bits (250), Expect = 4.520e-20
Identity = 63/177 (35.59%), Postives = 92/177 (51.98%), Query Frame = 3 
Query:  693 GRGSCLKRVDEEGFETDGNPPKGSKIKVHYKMKVVGGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEGWLDLAAEYNAV----PGKVETDGELRERWSEDLADGTSPMKDEAGLNKKLQAEMSAKTSTTPENT 1211
            G G  LK V  EG  +   P +G+ ++VHY+ K++G E    S   R KPF F LG    +   GW+  +S+M  GE ATL+C PQYA+GA G PP IPP++T+E  +EL G  +  A+ +      P    T G++ + + + LAD     + E   +K      S  TS+    T
Sbjct:   82 GDGGVLKTVKVEG--SGSVPQRGATVEVHYEGKLLGSETQFDSSRKRGKPFSFTLGE--GKVIGGWEVGLSSMRVGEKATLVCAPQYAYGAKGMPPVIPPSSTLEFEVELLGVSEAQADASTFAEDNPFSPRTPGDIAQAYEKRLADKAPKREGEIPGSKACLTGQSPSTSSGSSQT 254
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1096.663.1 vs. uniprot
Match: A0A7S4BDS1_CHRCT (Peptidylprolyl isomerase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BDS1_CHRCT)

HSP 1 Score: 100 bits (249), Expect = 1.130e-19
Identity = 57/147 (38.78%), Postives = 83/147 (56.46%), Query Frame = 3 
Query:  693 GRGSCLKRVDEEGFETDGNPPKGSKIKVHYKMKVVGGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEGWLDLAAEYNAV----PGKVETDGELRERWSEDLAD 1121
            G G  LK V  EG  +   P +G+ ++VHY+ K++G E    S   R KPF F LG    +   GW+  +S+M  GE ATL+C PQYA+GA G PP IPP++T+E  +EL G  +  A+ +      P    T G++ + + + LAD
Sbjct:   82 GDGGVLKTVKVEG--SGSVPQRGATVEVHYEGKLLGSETQFDSSRKRGKPFSFTLGE--GKVIGGWEVGLSSMRVGEKATLVCAPQYAYGAKGMPPVIPPSSTLEFEVELLGVSEAQADASTFAEDNPFSPRTPGDIAQAYEKRLAD 224
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1096.663.1 vs. uniprot
Match: A0A7S4EZK8_CHRCT (Peptidylprolyl isomerase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZK8_CHRCT)

HSP 1 Score: 100 bits (249), Expect = 1.240e-19
Identity = 57/147 (38.78%), Postives = 83/147 (56.46%), Query Frame = 3 
Query:  693 GRGSCLKRVDEEGFETDGNPPKGSKIKVHYKMKVVGGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEGWLDLAAEYNAV----PGKVETDGELRERWSEDLAD 1121
            G G  LK V  EG  +   P +G+ ++VHY+ K++G E    S   R KPF F LG    +   GW+  +S+M  GE ATL+C PQYA+GA G PP IPP++T+E  +EL G  +  A+ +      P    T G++ + + + LAD
Sbjct:   82 GDGGVLKTVKVEG--SGSVPQRGATVEVHYEGKLLGSETQFDSSRKRGKPFSFTLGE--GKVIGGWEVGLSSMRVGEKATLVCAPQYAYGAKGMPPVIPPSSTLEFEVELLGVSEAQADASTFAEDNPFSPRTPGDIAQAYEKRLAD 224
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1096.663.1 vs. uniprot
Match: UPI001D0823CC (FK506-binding protein 59 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D0823CC)

HSP 1 Score: 102 bits (253), Expect = 3.180e-19
Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 3 
Query:  699 GSCLKRVDEEGFETDGNPPKGSKIKVHYKMKVVGGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEGWL--DLAAE 1049
            G  LK++  EG   D  PP GSK+ VHY  K++ G  +  S  +R +PF+F LG+        WD  +++M +GEVA L C PQYA+GA+G+PP+IPPNAT+E  +E+  W+  DL+ E
Sbjct:   21 GGVLKKILHEGTG-DEYPPTGSKVTVHYVGKLLDG-TVFDSSRERGEPFQFDLGK--GTVIKAWDIGVASMKKGEVALLTCAPQYAYGASGSPPKIPPNATLEFEVEVFSWIGEDLSPE 135
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1096.663.1 vs. uniprot
Match: A0A2A4IZY8_HELVI (Peptidylprolyl isomerase n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4IZY8_HELVI)

HSP 1 Score: 95.1 bits (235), Expect = 9.160e-19
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 3 
Query:  690 GGRGSCLKRVDEEGFETDGNPPKGSKIKVHYKMKVVGGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEGW 1031
            G RG  LKR+ +EG  TD  P  G ++ VHY   ++ G    SS  DR +PFEF LG+        WD  ++ M +GEV  L C P YA+G AG+PP+IPPNAT++  +E+  W
Sbjct:   13 GDRG-VLKRIIKEGTGTD-TPNPGCQVTVHYTGTLLDGTKFDSS-RDRNEPFEFNLGK--GSVIKAWDIGVATMKKGEVCVLTCAPLYAYGNAGSPPKIPPNATLQFEIEMIDW 121
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1096.663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCA4_ECTSI0.000e+090.79Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YYM1_9STRA4.880e-3934.01Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A6V4G211_9EUKA8.370e-2347.01Peptidylprolyl isomerase n=1 Tax=Prymnesium polyle... [more]
A0A8J6CE85_DIALT2.500e-2144.35Peptidylprolyl isomerase n=1 Tax=Diacronema luther... [more]
A0A0L7KRI6_9NEOP3.530e-2143.59Peptidylprolyl isomerase (Fragment) n=1 Tax=Operop... [more]
A0A7S4EZ74_CHRCT4.520e-2035.59Peptidylprolyl isomerase n=1 Tax=Chrysotila carter... [more]
A0A7S4BDS1_CHRCT1.130e-1938.78Peptidylprolyl isomerase n=1 Tax=Chrysotila carter... [more]
A0A7S4EZK8_CHRCT1.240e-1938.78Peptidylprolyl isomerase n=1 Tax=Chrysotila carter... [more]
UPI001D0823CC3.180e-1944.54FK506-binding protein 59 n=1 Tax=Chrysoperla carne... [more]
A0A2A4IZY8_HELVI9.160e-1943.86Peptidylprolyl isomerase n=1 Tax=Heliothis viresce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1096contigE-siliculosus-1a_F_contig1096:20791..26209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1629
Model size1929
Exons6
Ec32 orthologEc-14_005490.1
Ec32 ortholog descriptionFKBP domain protein
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EggNOG OGsCOG0545@1,KOG0543@2759
EggNOG free text desc.FK506 binding
Seed eggNOG ortholog2880.D8LCA4
Seed ortholog evalue2.7e-270
Seed ortholog score937.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1096.663.1prot_E-siliculosus-1a_F_contig1096.663.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1096 21059..26177 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927599.0103931-UTR-E-siliculosus-1a_F_contig1096:20790..210581622927599.0103931-UTR-E-siliculosus-1a_F_contig1096:20790..21058Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1096 20791..21058 -
1696318604.5687368-UTR-E-siliculosus-1a_F_contig1096:20790..210581696318604.5687368-UTR-E-siliculosus-1a_F_contig1096:20790..21058Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1096 20791..21058 -
1622927599.17113-UTR-E-siliculosus-1a_F_contig1096:26177..262091622927599.17113-UTR-E-siliculosus-1a_F_contig1096:26177..26209Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1096 26178..26209 -
1696318604.659901-UTR-E-siliculosus-1a_F_contig1096:26177..262091696318604.659901-UTR-E-siliculosus-1a_F_contig1096:26177..26209Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1096 26178..26209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927599.0962064-CDS-E-siliculosus-1a_F_contig1096:21058..213641622927599.0962064-CDS-E-siliculosus-1a_F_contig1096:21058..21364Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1096 21059..21364 -
1696318604.5942602-CDS-E-siliculosus-1a_F_contig1096:21058..213641696318604.5942602-CDS-E-siliculosus-1a_F_contig1096:21058..21364Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1096 21059..21364 -
1622927599.1077554-CDS-E-siliculosus-1a_F_contig1096:21696..219021622927599.1077554-CDS-E-siliculosus-1a_F_contig1096:21696..21902Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1096 21697..21902 -
1696318604.6041813-CDS-E-siliculosus-1a_F_contig1096:21696..219021696318604.6041813-CDS-E-siliculosus-1a_F_contig1096:21696..21902Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1096 21697..21902 -
1622927599.118736-CDS-E-siliculosus-1a_F_contig1096:22289..225811622927599.118736-CDS-E-siliculosus-1a_F_contig1096:22289..22581Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1096 22290..22581 -
1696318604.6123781-CDS-E-siliculosus-1a_F_contig1096:22289..225811696318604.6123781-CDS-E-siliculosus-1a_F_contig1096:22289..22581Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1096 22290..22581 -
1622927599.1304736-CDS-E-siliculosus-1a_F_contig1096:23365..234551622927599.1304736-CDS-E-siliculosus-1a_F_contig1096:23365..23455Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1096 23366..23455 -
1696318604.6207614-CDS-E-siliculosus-1a_F_contig1096:23365..234551696318604.6207614-CDS-E-siliculosus-1a_F_contig1096:23365..23455Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1096 23366..23455 -
1622927599.1467152-CDS-E-siliculosus-1a_F_contig1096:23942..244651622927599.1467152-CDS-E-siliculosus-1a_F_contig1096:23942..24465Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1096 23943..24465 -
1696318604.631459-CDS-E-siliculosus-1a_F_contig1096:23942..244651696318604.631459-CDS-E-siliculosus-1a_F_contig1096:23942..24465Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1096 23943..24465 -
1622927599.159146-CDS-E-siliculosus-1a_F_contig1096:25965..261771622927599.159146-CDS-E-siliculosus-1a_F_contig1096:25965..26177Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1096 25966..26177 -
1696318604.6410956-CDS-E-siliculosus-1a_F_contig1096:25965..261771696318604.6410956-CDS-E-siliculosus-1a_F_contig1096:25965..26177Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1096 25966..26177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1096.663.1

>prot_E-siliculosus-1a_F_contig1096.663.1 ID=prot_E-siliculosus-1a_F_contig1096.663.1|Name=mRNA_E-siliculosus-1a_F_contig1096.663.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=543bp
MAFASNLLASVSFLLLSPQLWDLSVAFVVVYPPSDHGGASHRRFSERAAA
AASQWARAPTTAMHADSPGRTRQGSRCRCHPPSFDSSCSSGSSSSRERRA
SEGRVVGGAGRGGRTRRRSRQRLLQARPGNEAEPPEREVIDAEFSDDFSK
IVEADRASKRKKPREEKPAPRKKKAVKTAAAKKGAASTPAPAPAPFTFAG
SGFASLEEALASGEFADLSGGRGSCLKRVDEEGFETDGNPPKGSKIKVHY
KMKVVGGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVAT
LICGPQYAFGAAGAPPRIPPNATVETRLELEGWLDLAAEYNAVPGKVETD
GELRERWSEDLADGTSPMKDEAGLNKKLQAEMSAKTSTTPENTDHRGKKI
YDLESKEAREIMAKQKVQGYTPDFGYVERANYLDLYIPVPAGTRAKDVTV
EIHPDRMLVVVKGTGVVTQGHFQGKVALDGCHWLMSDLSLDPPGSTALGT
QDDEVRQGPVYRGETCVQVFLEKRKPFDTLWESVYRPREDGD*
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mRNA from alignment at E-siliculosus-1a_F_contig1096:20791..26209-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1096.663.1 ID=mRNA_E-siliculosus-1a_F_contig1096.663.1|Name=mRNA_E-siliculosus-1a_F_contig1096.663.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5419bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1096:20791..26209- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTGCCAGAGATCGCCACAGCCTGGCTGGCGTATGGCGTTCGCATCGAAC
TTGCTGGCATCAGTCAGTTTTCTGCTGCTATCCCCGCAGCTATGGGACCT
TTCTGTTGCCTTCGTCGTGGTGTACCCTCCTAGCGACCACGGCGGTGCCT
CGCATCGCCGGTTCTCCGAAAGGGCAGCAGCGGCTGCCTCGCAGTGGGCT
AGGGCGCCAACTACAGCCATGCACGCCGACTCCCCGGGAAGAACGTGAGT
CAAAGGTTGCGTCGGTACCTCCTTGTCCTTGACCTGTGCAGTGGTTTGCG
GGTGACGAGCTCCCTTCCGAGTGCCGTCTGTGTCGCTGATAACGGGTTTG
GGATCCACCGAGAGTCATGTTTGAAACAGGGAACTTTCTTCCGTCAAGGC
GAGCCTACAGCAGTACCACCGAGAACATATCGTACATATGCATGTGATAC
GGCAACAGCAGTGGGTGGACCCGTATCTGTAAATCGGGGACGGCGCCAGT
AAGAAACTGTGTGGTACTCAAAGGTGTGGATGTAAAACTTACTTACAACC
GAGGCTTTACTTGTACAACAAGTAGGTGTAGGTTACAACCGAGGCTTTAC
TTGTACAACAAGTAGGTGTAGGTTGCCGATAACATGTGTACCCTGTTCAA
CTACATGTACAGTACAAAGCAGTTGGTTCATCGTTCATATCCATATGCAT
ATGCATAGCAATCGACACACAGAGAGCAGGCCACAGCGGTACTACGAGGG
CGACCTATTCGACAAACGGGCCATATTCGATGTACTCGGAACGACTACGA
CGTCAATGACTCGCCTCGCCCACTGGAAGACACCGCGACGGGGTGGTTCG
TAGTAACAAAGATGGGCTCGGCTATGCTCGTTTGTTGTGTCGCATGTGAC
AGGCTCGGACACGGCCCGTGCGCTGTTGGAAGCCTCCGTGACTCCCTATG
CTACTTGGCGGGTCTTGCGGGTTAGGGTTGGATCGGGTTGGGCTGAAGGG
TGTTTAGCTGAAACTGTTCGGAATATTCTCACACGGCCTGATCCCCATTG
AGTGTGTGCATACATGTACTACTGTAAGACCGCCCAAACAGAGTACGATC
TGTTCTACAGAATCAGACAGGCCGACGACATCCCCTCGTGAGTTCGCGGC
CATCGCGGAGGGACCGCCGTGAGCCACTGACATCTCTGACCCCGATATTA
GCTCGGTACCCTCGTGGTAGCGCATATTGGGCGTGCTGTCGGGAGTACTC
GCCGAGCGAACGCGCCAACTCTCTCTTGCTTCGCAGCGAGGCCTGCAAGG
TGGACGCCGGCCGCTGTTGCTATATAACACCGCTGAACGGAAGTGAACGC
TACATTGCGGCCCCATTTCAGCCAAAGACTGGTCTGTTTAACCGGCACCC
AAACGTTGAGAACAGGCGATCTTCGAGATGCCTAAGATGATTCCATTCGA
ATTGTTTATCTCCCACACTCGGTGTTTGCATCGGTAAAGGTTACCTGGAG
TATTTCCTTTCGTGTGGTCTAAAAAGTGAACTTGACGATCGTTAGAGAGG
AGGACTTCGCATGTTACCGTGGACCAGAGGTGACAATTCTTCCGAAGTGG
CACCCTTACGGCCGACATGAATAATCGAGCATGTTGGGGTACCGTACATA
ACCTCGTCGCTGCTAACACCTACAACAGCAGTTCGTCAACACCCATCACT
TTACGTACGCAACACTGCGTCCCGCCCACGCCCGCGAACTGCAGCAGGCA
AGGCTCGCGATGTCGATGTCACCCGCCCTCGTTCGATAGTAGTTGTAGTA
GTGGTAGTAGTAGTAGTCGAGAGCGGAGAGCATCGGAGGGGCGTGTGGTC
GGCGGCGCCGGGAGGGGGGGGAGGACAAGACGTCGGAGTCGACAGCGCTT
GCTGCAAGCGAGGCCGGGAAACGAGGCGGAGCCGCCGGAGAGAGAAGTGA
TAGACGCCGAGTTCTCGGACGACTTCAGCAAGATCGTCGAGGCGGACCGG
GCCAGCAAGCGAAAGAAGCCTCGGGAGGAGAAACCAGCTCCTCGCAAGAA
GAAGGCGGTCAAAACGGCAGCAGCGAAGAAGGGCGCGGCCTCGACCCCTG
CCCCGGCCCCGGCTCCTTTCACGTTCGCGGGTTCCGGTTTCGCGTCCTTG
GAAGAAGCGCTCGCCTCGGGGGAGTTCGCGGATCTGTCGGGCGGGCGGGG
GTCTTGCCTAAAGCGCGTGGACGAGGAAGGGTTCGAAACCGACGGAAATC
CACCCAAAGGCTCCAAGGTATTTACAGCAGTACCTGGTTACTTGTGGAAA
CTCGTCAAGTCGTGAAATTACGCATGTGATCCGTTCCGATTGCTTTTTTT
GGGTCCTTGATGGTTGTCCCGGCCCACTGAGTGTGAGTGGTCCTTCCAGG
CATCCTGGGACTTTGCCCGGGTGCTCTCTTGTAGACCGTTGTCGGCATTA
CGGGAGGGAGTTCTGTTTACCGCTACGCGCCTCAGAGCAACAGTCGGTCG
TTGTTTTACGCTGCGGTAGGGAGCTGCCGAGAGCGATTAAGGGTTGCAAC
CAGCTTCTTGTTCGCCTTGACCCCGCTCTGAGGTGCTTACACCACAGCAA
CCTGGCGGGGATTGTTTCCTATGGAGGTAAAACCGGATAATTTCCTTGTT
ATTGGTTCCATGTTTTTGGTGTTTCGAACTTCCGTTTCGATCTATGGGTG
GATTCTTGCTGACGTCGTGTGTTATTTCCTCCGCGTTTTCGCCTGGCACG
GCAGATCAAGGTGCACTACAAGATGAAGGTTGTCGGCGGGGAGAACATCG
CGTCCAGTGGAGAAGACCGGACCAAGCCCTTCGAGTTTAGACTGGTAAAG
TTGTCGTTGCTAGGTTTTGCTTGCCTACTTCAACATGAGCCCTTTCTCGT
CTCAGACCTATGTTTGCCCTGCACTACCAGTAGAAACCCCCCCATAGCCT
TTGACTATTGTAATCTGACTGTGCGAGCGCTCTGCTCGGACACAAAATCC
CTATGAATTCAACCCTGTCTCCCGTGGAATTGCAAAGCTTGTTGCTCAAA
ACCAACTTATCTCACTGAAAAGCGACAGCCCCCTTCCAGTTGGCAGAGGG
TTTCAGAATATCTTTTGTAGGGATGTGACGCGCTGTCTCAACGATGAACG
TGCAAGCGTTCTTGGTTCCGATGTGTTGGCGGCGGTGAAAAATAGTAAAC
GGAAGCTGGGCAATGTTCTTTGTCCGCACATGAGTGTGCTAGCGGTTAGC
CCTCCTCGCTTGGATCAACATTGCTGTTGTTTCTGTACCCGAGCTACTCC
GACCAGGTCTACTCGAACGTACCCCCGTACCCACCGTACTCTCCATGGGT
GTGCATGTTTGTGCGCTTGTTTCGTGAATCAGCACCGTCGGCGTCAACAG
AGCCGACAAAAAACAGACGTCGGTATTTGCTGGGCAAGAGACACAGAAAC
ACTTTCTATTTCCCGGGGCCCCCTGAAAGGGAGGGGGGAGGAGCAGACGA
GATTGTTTCGGACGGTCCAAACTTTGGATTCGGAGGTTCAGACTGCTTTT
AAAGACGAAGCGCGGCAGTTACTAAGAGAGTTGTGATGTGTGTGCACGTC
CGTGTGTTTCCGTGCAAAACCAAATCAGGGCCGCTGGCCGAGCGAGGCGA
CCCACGGCTGGGACAAGGCCATCTCAGCGATGCACAGGGGAGAGGTCGCC
ACTCTCATCTGCGGGCCCCAGTACGCCTTCGGCGCGGCCGGCGCGCCGCC
CAGAATCCCCCCCAACGCCACCGTCGAGACTCGCCTGGAGCTGGAGGGCT
GGCTCGACCTTGCGGCGGAATATAATGCCGTCCCCGGGAAGGTGGAGACG
GACGGGGAGCTGAGAGAGAGGTGGAGCGAGGACTTGGCGGACGGGACGAG
CCCCATGAAGGACGAAGCAGGTGTTGTATGTAGCTGGAGAGGCGGCGAGG
TTCCGGGGGGGGAGGTGGGGGGGGGTGTACCCATAGCCGTGCATGCCGTG
GTCGTTAGACCATTGACCTCGCATCCCTACAAAGCCGGGACGGAGCACGC
CGGGTTTTCACCGGACCAGGCTGCTGCACATCACCAGGGGGCGGGTGGAG
GGGGAGCGACATTTCGAAGCTGGGTCAAGAATGGTTTGAGATTGGGGGCG
CTTTTTTTTCGGACGTGTTCGTCGTTTACGGGTGGAAGTGTCGCACGTGT
TGCGGCGATGTCACCTCGCCTCTCGCCGCTGGATGGTGCTGACCCCTCGT
TGTCCTGCTCCCGTGTGCCCTGCTTTCATCCATCCCCCCGCCCGGACGAC
CGGCTAGGGTTGAATAAAAAATTGCAGGCGGAGATGTCCGCGAAAACGAG
CACTACCCCTGAGAACACCGACCACCGCGGCAAGAAGATCTACGACCTCG
AGAGCAAGGAGGCGCGCGAAATCATGGCGAAGCAAAAGGTGCAGGGGTAC
ACGCCCGACTTTGGATACGTGGAGAGGGCCAACTACCTCGACCTCTACAT
CCCTGTCCCCGCGGTGAGTCATTGTACCCGAGAAGGTGGACTGTTGTTGT
TGTTGTTGTTGTTGTTGTGATTGTGCGTGCAAACTATATTGTAGGACGCA
GATAGCCACATTTTGGTGTTCCCGCCGCATGAATAGTTTGTGGGGCGCAG
TTTGATACGGTTCGTTGCCTTAGGCACGCGCGTTGTGTTGCAATTTTGCA
AGTAGCAATTCTATTCTAGACCGAATAGTAAATACCCTGGTTCTTTCCCT
CTCTGCCCCCCCCTTCTTTCATGCCCACAACCCTCCCTCGTGCTTCCTTC
TCTCCCTTGTACCCCCGTGTTGACATCCGGGGGGGGGGGGAACAGGGCAC
CCGAGCAAAGGACGTAACGGTCGAGATCCACCCCGACCGCATGCTCGTCG
TGGTGAAGGGGACCGGGGTCGTGACCCAGGGGCACTTTCAGGGGAAAGTA
GCCCTCGACGGTTGCCACTGGCTCATGTCCGATCTCTCCCTGGACCCTCC
CGGCTCGACGGCGCTCGGCACGCAGGACGACGAGGTTCGCCAGGGGCCCG
TGTACCGAGGAGAGACGTGCGTGCAGGTGTTCCTAGAGAAGAGGAAGCCG
TTCGACACGCTGTGGGAGAGCGTCTACCGACCACGGGAAGATGGCGATTG
ATGGTGCTACTGGTGGTAGCGATCGAAACGGTGCTCCGACGGCGGCGGTG
TGGATGGCACGTGTAGGGCGACTTTGAAGCTTGGCGTTTTGGTGCAAGGG
CGCTGTATTTTTCTTGCGAGTGCAATCACGATTGACTGGTCCGTGATTGA
GTTGGTTGACATCCACCTCGCAGTTTGAACTCAGTATTGACATGTCCAGT
GAAAGTCGAAAAAAATGTGTTGTTCGGGTGGTTGCCCATTCACGATGCTC
GTCAAGAGCTTCTGTGCTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1096:20791..26209-

>mRNA_E-siliculosus-1a_F_contig1096.663.1 ID=mRNA_E-siliculosus-1a_F_contig1096.663.1|Name=mRNA_E-siliculosus-1a_F_contig1096.663.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1096:20791..26209- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGTTCGCATCGAACTTGCTGGCATCAGTCAGTTTTCTGCTGCTATC
CCCGCAGCTATGGGACCTTTCTGTTGCCTTCGTCGTGGTGTACCCTCCTA
GCGACCACGGCGGTGCCTCGCATCGCCGGTTCTCCGAAAGGGCAGCAGCG
GCTGCCTCGCAGTGGGCTAGGGCGCCAACTACAGCCATGCACGCCGACTC
CCCGGGAAGAACATGGCGTTCGCATCGAACTTGCTGGCATCAGTCAGTTT
TCTGCTGCTATCCCCGCAGCTATGGGACCTTTCTGTTGCCTTCGTCGTGG
TGTACCCTCCTAGCGACCACGGCGGTGCCTCGCATCGCCGGTTCTCCGAA
AGGGCAGCAGCGGCTGCCTCGCAGTGGGCTAGGGCGCCAACTACAGCCAT
GCACGCCGACTCCCCGGGAAGAACCAGGCAAGGCTCGCGATGTCGATGTC
ACCCGCCCTCGTTCGATAGTAGTTGTAGTAGTGGTAGTAGTAGTAGTCGA
GAGCGGAGAGCATCGGAGGGGCGTGTGGTCGGCGGCGCCGGGAGGGGGGG
GAGGACAAGACGTCGGAGTCGACAGCGCTTGCTGCAAGCGAGGCCGGGAA
ACGAGGCGGAGCCGCCGGAGAGAGAAGTGATAGACGCCGAGTTCTCGGAC
GACTTCAGCAAGATCGTCGAGGCGGACCGGGCCAGCAAGCGAAAGAAGCC
TCGGGAGGAGAAACCAGCTCCTCGCAAGAAGAAGGCGGTCAAAACGGCAG
CAGCGAAGAAGGGCGCGGCCTCGACCCCTGCCCCGGCCCCGGCTCCTTTC
ACGTTCGCGGGTTCCGGTTTCGCGTCCTTGGAAGAAGCGCTCGCCTCGGG
GGAGTTCGCGGATCTGTCGGGCGGGCGGGGGTCTTGCCTAAAGCGCGTGG
ACGAGGAAGGGTTCGAAACCGACGGAAATCCACCCAAAGGCTCCAAGCAG
GCAAGGCTCGCGATGTCGATGTCACCCGCCCTCGTTCGATAGTAGTTGTA
GTAGTGGTAGTAGTAGTAGTCGAGAGCGGAGAGCATCGGAGGGGCGTGTG
GTCGGCGGCGCCGGGAGGGGGGGGAGGACAAGACGTCGGAGTCGACAGCG
CTTGCTGCAAGCGAGGCCGGGAAACGAGGCGGAGCCGCCGGAGAGAGAAG
TGATAGACGCCGAGTTCTCGGACGACTTCAGCAAGATCGTCGAGGCGGAC
CGGGCCAGCAAGCGAAAGAAGCCTCGGGAGGAGAAACCAGCTCCTCGCAA
GAAGAAGGCGGTCAAAACGGCAGCAGCGAAGAAGGGCGCGGCCTCGACCC
CTGCCCCGGCCCCGGCTCCTTTCACGTTCGCGGGTTCCGGTTTCGCGTCC
TTGGAAGAAGCGCTCGCCTCGGGGGAGTTCGCGGATCTGTCGGGCGGGCG
GGGGTCTTGCCTAAAGCGCGTGGACGAGGAAGGGTTCGAAACCGACGGAA
ATCCACCCAAAGGCTCCAAGATCAAGGTGCACTACAAGATGAAGGTTGTC
GGCGGGGAGAACATCGCGTCCAGTGGAGAAGACCGGACCAAGCCCTTCGA
GTTTAGACTGATCAAGGTGCACTACAAGATGAAGGTTGTCGGCGGGGAGA
ACATCGCGTCCAGTGGAGAAGACCGGACCAAGCCCTTCGAGTTTAGACTG
GGCCGCTGGCCGAGCGAGGCGACCCACGGCTGGGACAAGGCCATCTCAGC
GATGCACAGGGGAGAGGTCGCCACTCTCATCTGCGGGCCCCAGTACGCCT
TCGGCGCGGCCGGCGCGCCGCCCAGAATCCCCCCCAACGCCACCGTCGAG
ACTCGCCTGGAGCTGGAGGGCTGGCTCGACCTTGCGGCGGAATATAATGC
CGTCCCCGGGAAGGTGGAGACGGACGGGGAGCTGAGAGAGAGGTGGAGCG
AGGACTTGGCGGACGGGACGAGCCCCATGAAGGACGAAGCAGGGCCGCTG
GCCGAGCGAGGCGACCCACGGCTGGGACAAGGCCATCTCAGCGATGCACA
GGGGAGAGGTCGCCACTCTCATCTGCGGGCCCCAGTACGCCTTCGGCGCG
GCCGGCGCGCCGCCCAGAATCCCCCCCAACGCCACCGTCGAGACTCGCCT
GGAGCTGGAGGGCTGGCTCGACCTTGCGGCGGAATATAATGCCGTCCCCG
GGAAGGTGGAGACGGACGGGGAGCTGAGAGAGAGGTGGAGCGAGGACTTG
GCGGACGGGACGAGCCCCATGAAGGACGAAGCAGGGTTGAATAAAAAATT
GCAGGCGGAGATGTCCGCGAAAACGAGCACTACCCCTGAGAACACCGACC
ACCGCGGCAAGAAGATCTACGACCTCGAGAGCAAGGAGGCGCGCGAAATC
ATGGCGAAGCAAAAGGTGCAGGGGTACACGCCCGACTTTGGATACGTGGA
GAGGGCCAACTACCTCGACCTCTACATCCCTGTCCCCGCGGGTTGAATAA
AAAATTGCAGGCGGAGATGTCCGCGAAAACGAGCACTACCCCTGAGAACA
CCGACCACCGCGGCAAGAAGATCTACGACCTCGAGAGCAAGGAGGCGCGC
GAAATCATGGCGAAGCAAAAGGTGCAGGGGTACACGCCCGACTTTGGATA
CGTGGAGAGGGCCAACTACCTCGACCTCTACATCCCTGTCCCCGCGGGCA
CCCGAGCAAAGGACGTAACGGTCGAGATCCACCCCGACCGCATGCTCGTC
GTGGTGAAGGGGACCGGGGTCGTGACCCAGGGGCACTTTCAGGGGAAAGT
AGCCCTCGACGGTTGCCACTGGCTCATGTCCGATCTCTCCCTGGACCCTC
CCGGCTCGACGGCGCTCGGCACGCAGGACGACGAGGTTCGCCAGGGGCCC
GTGTACCGAGGAGAGACGTGCGTGCAGGTGTTCCTAGAGAAGAGGAAGCC
GTTCGACACGCTGTGGGAGAGCGTCTACCGACCACGGGAAGATGGCGATT
GAGGCACCCGAGCAAAGGACGTAACGGTCGAGATCCACCCCGACCGCATG
CTCGTCGTGGTGAAGGGGACCGGGGTCGTGACCCAGGGGCACTTTCAGGG
GAAAGTAGCCCTCGACGGTTGCCACTGGCTCATGTCCGATCTCTCCCTGG
ACCCTCCCGGCTCGACGGCGCTCGGCACGCAGGACGACGAGGTTCGCCAG
GGGCCCGTGTACCGAGGAGAGACGTGCGTGCAGGTGTTCCTAGAGAAGAG
GAAGCCGTTCGACACGCTGTGGGAGAGCGTCTACCGACCACGGGAAGATG
GCGATTGA
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