mRNA_E-siliculosus-1a_F_contig1096.661.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1096.661.1 vs. uniprot
Match: D8LCA7_ECTSI (Protein xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA7_ECTSI) HSP 1 Score: 478 bits (1230), Expect = 2.310e-168 Identity = 229/236 (97.03%), Postives = 232/236 (98.31%), Query Frame = 1
Query: 1 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITGFKYEPSWEGYKFVDRREMFAEDEAVMRNTGREKRWPWAILDAQKEMLRRPMPNVFTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTYFSGMMVSDEEFFQTVACNPFFPHDTLRVHDDNLRFVNWWGDQASPAIVPTFRAVAAANSGALFGRKFSSGTEEGRDGVRWVESYLAESSR 708
GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLL+ DEIAGILGEHKAGNTSFITGFKYEPSWEGYKFVDRREMFAEDEAVMRNTGREKRWPWAILDA KEMLRRPMPN+FTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTY SGMMVSDEEFFQTVACNPFFPHDTLRVH+DNLRFVNWWGDQASPAIVPTFRAVAAANSGALFGRKFSS TEEGRDGVRWVESYLAESSR
Sbjct: 72 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLK-DEIAGILGEHKAGNTSFITGFKYEPSWEGYKFVDRREMFAEDEAVMRNTGREKRWPWAILDAHKEMLRRPMPNIFTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTYSSGMMVSDEEFFQTVACNPFFPHDTLRVHNDNLRFVNWWGDQASPAIVPTFRAVAAANSGALFGRKFSSSTEEGRDGVRWVESYLAESSR 306
BLAST of mRNA_E-siliculosus-1a_F_contig1096.661.1 vs. uniprot
Match: A0A6H5KJT8_9PHAE (Protein xylosyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT8_9PHAE) HSP 1 Score: 479 bits (1233), Expect = 1.660e-166 Identity = 229/236 (97.03%), Postives = 232/236 (98.31%), Query Frame = 1
Query: 1 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITGFKYEPSWEGYKFVDRREMFAEDEAVMRNTGREKRWPWAILDAQKEMLRRPMPNVFTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTYFSGMMVSDEEFFQTVACNPFFPHDTLRVHDDNLRFVNWWGDQASPAIVPTFRAVAAANSGALFGRKFSSGTEEGRDGVRWVESYLAESSR 708
GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITGFKYEPSWEGYKFVDRREMFAEDEAVMR+TGREKRWPWAILDAQKEMLRRPMPNVFTVHKGEFWVMLHRSMAEYVHKS DNQARMLLTYFSGM+VSDEEFFQTVACNPFFPHDTLRVH+DNLRFVNWWGDQASPAIVP FRAVAAANSGALFGRKFSS TEEGRDGVRWVESYLA SSR
Sbjct: 165 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITGFKYEPSWEGYKFVDRREMFAEDEAVMRDTGREKRWPWAILDAQKEMLRRPMPNVFTVHKGEFWVMLHRSMAEYVHKSRDNQARMLLTYFSGMIVSDEEFFQTVACNPFFPHDTLRVHNDNLRFVNWWGDQASPAIVPPFRAVAAANSGALFGRKFSSSTEEGRDGVRWVESYLAASSR 400
BLAST of mRNA_E-siliculosus-1a_F_contig1096.661.1 vs. uniprot
Match: A0A835YZY2_9STRA (Core-2/I-branching enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY2_9STRA) HSP 1 Score: 166 bits (421), Expect = 2.440e-45 Identity = 92/215 (42.79%), Postives = 130/215 (60.47%), Query Frame = 1
Query: 4 FTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITGFKYEPSWEGYKFVDRREMFAEDEAVMRNTGREKRWPWAILDAQKEM--LRRPMPNVFTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTYFSGMMVSDEEFFQTVACNPFFPHDTLRVHDDNLRFVNWWG-DQASPAIVPTFRAVAAANSGALFGRKF 639
F+M L A++GL+ A+ W+++WD++INLS +D+PLL ADE+ +LG G P WE + DRR + +DE + R+ R + I A K M + RP P++F V+KGEFWV+LHRS+AEY+H SPDN AR + Y + +SDE FFQTVAC+P P + + +D+LRF+ W + PA + A SGALF RKF
Sbjct: 118 FSMLLTALHGLSSAIGWSSQWDFWINLSPADMPLLTADEMRLVLGALSRDRPVSFMGCT-RPDWEQVR-PDRRHTYMDDEGLYRSLPRPRGRLSVIQHAPKPMRGVARPPPDLFDVYKGEFWVVLHRSLAEYIHHSPDNVARSVYLYLAATYISDELFFQTVACHPKLPA-SFHIINDSLRFIRWPPKSRGHPATIDDVLLEEALASGALFARKF 329
BLAST of mRNA_E-siliculosus-1a_F_contig1096.661.1 vs. uniprot
Match: A0A6H5L1U8_9PHAE (GT14 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1U8_9PHAE) HSP 1 Score: 164 bits (416), Expect = 1.330e-43 Identity = 92/230 (40.00%), Postives = 126/230 (54.78%), Query Frame = 1
Query: 1 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITGFKYEPSWEGYKFVDRREMFAEDEAVMR-NTGREKRWPWAILDAQKEMLR--RPMPNVFTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTYFSGMMVSDEEFFQTVACNPFFPHDTLRVHDDNLRFVNW--------WGDQASPAIVPTFRAVAAANSGALFGRKFSSGTEE 657
G+++TL A++GL+ + W+ WDYFINLSA+D PLL + E++ +G +F+TG +R E++ +D+ + R N R P+ +R RP+PN+FT+ KGEFWV LHR EYVH+SPDN AR L YF+ +SDE FFQT C+P P +H+DNLR VNW W P V + SGALF RKF GT +
Sbjct: 198 GYSITLTALFGLSTLVEWSRDWDYFINLSATDFPLLSSAEMSVAMGSFVESRMNFVTGSAMMEQ-------NRAELYVDDQGLYRVNETRRAAQPFLQRRQSGPPVRVERPLPNLFTLFKGEFWVALHRDFCEYVHESPDNVARSLQAYFAKFRISDESFFQTTLCHPAAP-SAFPIHNDNLRLVNWPYFDPETEWVLHPDP--VQSKHVTKLMKSGALFARKFELGTSD 417
BLAST of mRNA_E-siliculosus-1a_F_contig1096.661.1 vs. uniprot
Match: A0A6H5KBR7_9PHAE (GT14 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR7_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.890e-37 Identity = 86/233 (36.91%), Postives = 116/233 (49.79%), Query Frame = 1
Query: 1 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITGFK---YEPSWEGYKFVDRREMFAEDEAVMRNTGREKRWPWAILDAQKEMLRRPMPNVFTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTYFSGMMVSDEEFFQTVACNPFFPHDTLRVHDDNLRFVNW-------WGDQAS----------PAIVPTFRAVAAANSGALFGRKF 639
GF++TL +YG+ AL W+ WDYFINLS SD P++ DE+ LGEH SF+ G +E W+GY ED+ + R L ++R P F ++KGEFW HRS EY SPDN AR L YF+G +SDE +FQT+AC+P +H DN RF +W G + P + + + A++SGALF RKF
Sbjct: 166 GFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHADAGVSFMDGEPMTGFEKRWQGY---------TEDQGLHRRADHHTSVAMQTLGR----IQRAYPQRFRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFTGYRISDESYFQTLACHP--EGKVFPIHGDNFRFTSWNEHHRDSHGRKVDANGHILIHPEPLAIASIDKIKASSSGALFARKF 383
BLAST of mRNA_E-siliculosus-1a_F_contig1096.661.1 vs. uniprot
Match: D8LDZ1_ECTSI (Xylosyltransferase, family GT14 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ1_ECTSI) HSP 1 Score: 144 bits (364), Expect = 6.040e-36 Identity = 87/231 (37.66%), Postives = 114/231 (49.35%), Query Frame = 1
Query: 1 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITG---FKYEPSWEGYKFVDRREMFAEDEAVMRNTGREKRWPWAILDAQKEMLRRPMPNVFTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTYFSGMMVSDEEFFQTVACNPFFPHDTLRVHDDNLRFVNWWGDQASP-----------AIVPTFRAVAAAN----SGALFGRKF 639
GF++TL +YG+ AL W+ WDYFINLS SD P++ DE+ LGEH SF+ G +E W+GY ED+ + R L ++R P F ++KGEFW HRS EY SPDN AR L YF+G +SDE +FQT+AC+P +H DN RF +W I P A+A+ + SGALF RKF
Sbjct: 226 GFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHADAGVSFMDGELMTGFEKRWQGY---------TEDQGLQRRADHHTSVAMQTLGR----IQRAYPQRFRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFTGYRISDESYFQTLACHP--EGKVFPIHGDNFRFTSWNEHHRDSHGRKIDANGHILIHPEPLAIASVDKIMSSGALFARKF 441
BLAST of mRNA_E-siliculosus-1a_F_contig1096.661.1 vs. uniprot
Match: A0A6H5L6Q9_9PHAE (Protein xylosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6Q9_9PHAE) HSP 1 Score: 143 bits (360), Expect = 4.620e-35 Identity = 93/264 (35.23%), Postives = 135/264 (51.14%), Query Frame = 1
Query: 1 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITGFKYEPSWEGYKFVDRREMFAEDEAVMRNTGREKRWPWAILDAQKEMLRRPMPNVFTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTYFSGMMVSDEEFFQTVACNPFFPHDTLRVHD-----------------DNLRFVNWWGDQASPAIVPTFRAV--------------AAANSGALFGRKFSSGTEEGRDGVRWVESYLAE 699
G+T+TL A++G+ + WN +WD+FINLSASD PLL E+ +LG++ +F++G EP E +R E+ +D+ + R K L K L P ++FTV+KGEFWV+LHRS +Y+ SPDN AR L YFS +SDE +FQTV C+P P ++ + DNLRFV+W P ++ + A +SGALF RKF T+ ++ +E L+E
Sbjct: 244 GYTITLTAIFGICTMVQWNDEWDFFINLSASDFPLLPQSELTTVLGKYADVGMNFVSG---EPLNER----NRAEVLIDDQGLYREKQSSK--AGRPLKVGKARLP-PSKSMFTVYKGEFWVILHRSFCKYLEASPDNVARSLQAYFSKFRISDESYFQTVLCHPLAPSFLVQPAEKVPIVCLATKRLSCSFTDNLRFVSW------PDVIEGHYVLHPDPITGGASGNVNVAMDSGALFARKFD--TKVSQEAYTVLEKSLSE 489
BLAST of mRNA_E-siliculosus-1a_F_contig1096.661.1 vs. uniprot
Match: A0A388KN84_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KN84_CHABU) HSP 1 Score: 94.7 bits (234), Expect = 3.300e-18 Identity = 68/214 (31.78%), Postives = 98/214 (45.79%), Query Frame = 1
Query: 1 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITGFKYEPSWEGYKFVDRREMFAEDEAVMRNTGREKRWPWAILDAQKEMLRRPMPNVFTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTYFSGMMVSDEEFFQTVACNPFFPHDTLRVHDDNLRFVNWWGDQAS-PAIVPTFRAVAAANSGALFGRKF 639
G TM ++G++ L +KWD+FINLSASD PL+ D+ +L G +F+ P YK R D A+ R+T + + Q+ R PN F + +G WVML + EY+ DN R+ L YF+ ++ S E +F TV CN H V+ D L F+ W P + + A N+ F RKF
Sbjct: 156 GPTMISTTLHGMSIFLRKKSKWDWFINLSASDYPLITQDDFLHVLSSVPRG-LNFLDHTSEIPD---YKMRQRVRSMVVDPAIYRSTKSD------LFFVQET---RATPNAFRLFQGSAWVMLSYNFCEYLIYGWDNLPRLALMYFANVLSSPESYFHTVVCNS-KEHFNTTVNTD-LHFIAWQNPPTQHPLFLNSTFYAAMVNASVPFARKF 354
BLAST of mRNA_E-siliculosus-1a_F_contig1096.661.1 vs. uniprot
Match: A0A0K9NHY8_ZOSMR (Glycosyltransferase, family GT14 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NHY8_ZOSMR) HSP 1 Score: 92.8 bits (229), Expect = 1.110e-17 Identity = 70/218 (32.11%), Postives = 101/218 (46.33%), Query Frame = 1
Query: 1 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITGFKYEPSWEGYKFVDRREMFAEDEAVMRNTGREKRWPWAILDAQKEMLRRPMPNVFTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTYFSGMMVSDEEFFQTVACNPFFPHDTLRVHDDNLRFVNWWGD-QASPAIVPTFRAVAAANSGALFGRKFSSGT 651
G TM N ++ L+ + WD+FINLSA+D PL+ D+I + + N +F+ S G+K DR D + N D +R +P+ F + G W+ L R EY DN R LL Y++ + S E +FQTV CN P V +++L +++W Q PA + T + SGA F RKFSSGT
Sbjct: 138 GPTMVANTLHACAILLNISKDWDWFINLSAADYPLVSQDDILKMFSKVDR-NMNFVE----HSSNLGWKEWDRGNPLMIDPGLYSNRK---------ADVFFTTEKRELPSQFKLFTGSAWMGLTREFVEYCILGIDNLPRTLLMYYTNFVSSPEGYFQTVICNS--PEFNSTVVNNDLHYISWPDPPQQHPAPILTQQFDVLLASGAPFARKFSSGT 339
BLAST of mRNA_E-siliculosus-1a_F_contig1096.661.1 vs. uniprot
Match: A0A388K5S3_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K5S3_CHABU) HSP 1 Score: 92.8 bits (229), Expect = 2.970e-17 Identity = 65/195 (33.33%), Postives = 89/195 (45.64%), Query Frame = 1
Query: 1 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITGFKYEPSWEGYKFVDRREMFAEDEAVMRNTGREKRWPWAILDAQKEMLRRPMPNVFTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTYFSGMMVSDEEFFQTVACN-PFFPHDTLRVHDDNLRFVNWWGDQASPAIV 582
G TM + ++G+ L WD+FINLS SD PL+ DE+ +L N SFI + R A E V + G + D + +R MP F + KG WV L RS AEYV DN R+L+ YF+ + S E +FQT CN P F + V +L +V W G P ++
Sbjct: 386 GATMITSTLHGIAVLLRRKRSWDWFINLSPSDYPLVTQDELLYVLSSVPR-NLSFIA----------HSNKTDRIQRARIEPVFVDPGF---YGTEKSDLIQTNRKRSMPTAFRIFKGSAWVCLSRSFAEYVIWGYDNLPRLLVAYFANFVSSPESYFQTAICNSPDFAGSVVNV---DLHYVQWMGGGQHPMVL 563 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1096.661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1096.661.1 >prot_E-siliculosus-1a_F_contig1096.661.1 ID=prot_E-siliculosus-1a_F_contig1096.661.1|Name=mRNA_E-siliculosus-1a_F_contig1096.661.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=298bp MTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTback to top mRNA from alignment at E-siliculosus-1a_F_contig1096:807..4665+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1096.661.1 ID=mRNA_E-siliculosus-1a_F_contig1096.661.1|Name=mRNA_E-siliculosus-1a_F_contig1096.661.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3859bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1096:807..4665+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1096:807..4665+ >mRNA_E-siliculosus-1a_F_contig1096.661.1 ID=mRNA_E-siliculosus-1a_F_contig1096.661.1|Name=mRNA_E-siliculosus-1a_F_contig1096.661.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1788bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1096:807..4665+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |