mRNA_E-siliculosus-1a_F_contig1095.657.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1095.657.1 vs. uniprot
Match: A0A6H5KN98_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE) HSP 1 Score: 315 bits (807), Expect = 2.400e-107 Identity = 162/167 (97.01%), Postives = 162/167 (97.01%), Query Frame = 1 Query: 181 MQPTPRSTPARGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFVCENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTTIGDSEPDSGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLYDN 681 MQPTPRSTP RGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSF CENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKT IGDSEP SGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLY N Sbjct: 1 MQPTPRSTPTRGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTNIGDSEPGSGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLYGN 167
BLAST of mRNA_E-siliculosus-1a_F_contig1095.657.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.440e-34 Identity = 76/163 (46.63%), Postives = 100/163 (61.35%), Query Frame = 1 Query: 208 ARGATDMEQKR-RIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFVCENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEA----LNEVLANKTTIGDSEPDSGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLYDN 681 ARGA+ +R R ANRIHC+ETR+R+R E L E VE+L L +++VE GPDLFS H DAPFS++C+N+ +LQ+ PE VG+ L SIVD +A L A LNE +V +R++ G I C ASMS+ GS GL+VVTRLY + Sbjct: 14 ARGASQKSDERSREANRIHCKETRDRRRERERALSEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQHXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLIVVTRLYSS 176
BLAST of mRNA_E-siliculosus-1a_F_contig1095.657.1 vs. uniprot
Match: D8LCA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA0_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 1.890e-12 Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 1 Query: 310 EEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFVCENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTTIGDSEPDS 570 +E ++L +Y+ +VE GPDLFS H DAPFSFV ++ + QL E +GKPL ++VDP+D +L AL VL T G +S Sbjct: 8 QEEDVLEVYRDIVENGPDLFSLHGTTLDAPFSFVSKSLNLKFQLPSEYLLGKPLKTVVDPDDWGVLTTALLAVLGPNPTSGGKSGNS 94 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1095.657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1095.657.1 >prot_E-siliculosus-1a_F_contig1095.657.1 ID=prot_E-siliculosus-1a_F_contig1095.657.1|Name=mRNA_E-siliculosus-1a_F_contig1095.657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=168bp MQPTPRSTPARGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSback to top mRNA from alignment at E-siliculosus-1a_F_contig1095:23850..28474+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1095.657.1 ID=mRNA_E-siliculosus-1a_F_contig1095.657.1|Name=mRNA_E-siliculosus-1a_F_contig1095.657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4625bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1095:23850..28474+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1095:23850..28474+ >mRNA_E-siliculosus-1a_F_contig1095.657.1 ID=mRNA_E-siliculosus-1a_F_contig1095.657.1|Name=mRNA_E-siliculosus-1a_F_contig1095.657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1008bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1095:23850..28474+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |