Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1094.652.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE) HSP 1 Score: 179 bits (453), Expect = 6.790e-49 Identity = 135/168 (80.36%), Postives = 138/168 (82.14%), Query Frame = 1 Query: 67 MDRRRARTALCTYFLAVGSSRAYTFAPSILHGTPPGGTGARAREPPGMRNPLSGSRAVRRVRGSIRGRNNGLNGTGXXXXXXXXXXXXXNTXXTNSITPDAGGPDXXXXXXXXXXXXXSGSGPAVAGQRTPEVGAAXXXXXXXXXXXXXXXXXXRSRPAMALGQAMQG 570
MD+RRARTALCTYFLAVGSSRAY FAPS+LHGT PGG GARA EPPGM + LSGSRAVRRVRG IRGRNNGLNGTGXXXXXXXXXXXXX XXTNSITPDAGGPD XXXXXXXXXXXXSG GPAVAGQR PEVGAA RSRPAMALGQAMQG
Sbjct: 1 MDKRRARTALCTYFLAVGSSRAYAFAPSVLHGTSPGGPGARAHEPPGMGSSLSGSRAVRRVRGYIRGRNNGLNGTGXXXXXXXXXXXXX-XXXTNSITPDAGGPDGXXXXXXXXXXXXSG-GPAVAGQRAPEVGAAGAAGVGIGGGARRPYLAGRSRPAMALGQAMQG 166
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 570 |
| Model size | 571 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927595.6320093-CDS-E-siliculosus-1a_F_contig1094:31111..31270 | 1622927595.6320093-CDS-E-siliculosus-1a_F_contig1094:31111..31270 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1094 31112..31270 + |
| 1696318603.5166981-CDS-E-siliculosus-1a_F_contig1094:31111..31270 | 1696318603.5166981-CDS-E-siliculosus-1a_F_contig1094:31111..31270 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1094 31112..31270 + |
| 1622927595.6436799-CDS-E-siliculosus-1a_F_contig1094:32248..32659 | 1622927595.6436799-CDS-E-siliculosus-1a_F_contig1094:32248..32659 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1094 32249..32659 + |
| 1696318603.528023-CDS-E-siliculosus-1a_F_contig1094:32248..32659 | 1696318603.528023-CDS-E-siliculosus-1a_F_contig1094:32248..32659 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1094 32249..32659 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1094.652.1 >prot_E-siliculosus-1a_F_contig1094.652.1 ID=prot_E-siliculosus-1a_F_contig1094.652.1|Name=mRNA_E-siliculosus-1a_F_contig1094.652.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=190bp
HQTQQDTQRRAQRRQERNSRLAMDRRRARTALCTYFLAVGSSRAYTFAPS
ILHGTPPGGTGARAREPPGMRNPLSGSRAVRRVRGSIRGRNNGLNGTGGG
GGGSSGVGGSTNTGNTNSITPDAGGPDGGGNTAASAAAGGSGSGPAVAGQ
RTPEVGAAGAAGVGIGGGARRPYLAGRSRPAMALGQAMQG back to topmRNA from alignment at E-siliculosus-1a_F_contig1094:31112..32660+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1094.652.1 ID=mRNA_E-siliculosus-1a_F_contig1094.652.1|Name=mRNA_E-siliculosus-1a_F_contig1094.652.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1549bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1094:31112..32660+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCAGACACAGCAGGACACACAGAGGAGGGCGCAACGCAGACAGGAGCG
TAACAGCAGACTTGCCATGGATAGGCGGAGAGCGAGAACGGCCTTGTGCA
CCTATTTCTTGGCGGTGGGCTCTTCCAGGGCGTACACCTTTGCGCCCTCG
ATTCTGCATGTAAGTGGCAGAGCAGTCCCTGTAGGATCGATCGATCGGCG
TGTGTTCATGCCAGGTGGGGGAGGAAAGAAGAAGGTCGGCGTCTCGATGT
GTATGTGTCATGAAGAGCCTTTTGGTATCATGCCTGTTCTAGGGGGAGCG
TCGCCGGCGGGAATTGCATTTGCTTGTTGAAGGAATGCGGCCGGCCGCGG
TCTACGGCAGTACATGGGTAGCACTGCTGTGTTGTGGTATGAATCGATCA
TCACGTGCCCTGTTTACTCTCTTGAAAGGCGTTGTGTGTCAGAGAGGCAC
CTTGCGAGCAGCGGCCTTGGTATACTCGTGCATCAGGGAGTGTAGCTGTC
CTTGTAAGTTCTCCTCAGCAAGCTCAATCAGGCCTTCTGGCCGTTACCGT
TTTTGCGCCCTTCTTCACCTACGGCTGTTTGAAGTTTGAAGTACTTCTTG
GAGGAAGGCAAGAAGAGCGGGTTCGAAAGAAATTTCATGTGTCACATTTG
CATGAGTGAACGTCACATGTACCGCCCGTTAGTGTCTGGTTATATGCATA
GGCTCTCCTTGTTTGTGCTTGTGCCTACACACATCTAGCGATAGAAAGTC
GCTGCGTGCCTGCTGGCTGGTGTCCCGTTTCTCCAGGCTCTCTCTCTCTT
TATTGGGTTGAGGTATCGTATTATGTGTCCTCAATACAAACATGACTTTT
TGTTTTGCTTCAGGCGACACCGCCACCAGCGCCACCTTTGGCGTACATGC
CATTCGAGTGCTGTGGTTAGATATCTTCTGTGTTTGTATGTTTCCTACGT
AGTACTAGAAGTATATCGTTAGCCAAGAGATAACCACCGCATCCGACTCC
CTCCTCTTTTCGCACAATTTACAACGACAAACTCACACCAGACCTCCCTC
CCTCCTATCCAACAAAACCCTCGCTGGATACACACATAACGACGACGACA
TACCCCCCCCTTAAATGTCAACATATTTTCAACAAAGGGTACCCCCCCGG
GCGGTACAGGCGCGCGAGCCCGCGAACCCCCCGGCATGAGGAACCCACTG
TCCGGTTCCCGCGCTGTTCGCCGGGTAAGGGGCTCCATCCGCGGCCGAAA
CAACGGGCTCAACGGCACCGGCGGCGGCGGCGGCGGCAGCAGCGGAGTAG
GCGGCAGCACCAACACGGGAAACACCAACAGCATCACCCCGGACGCCGGC
GGCCCGGACGGTGGCGGCAACACGGCCGCCTCCGCCGCCGCCGGCGGCAG
CGGCAGTGGTCCTGCTGTCGCCGGCCAGAGGACCCCAGAGGTGGGCGCGG
CGGGCGCGGCCGGCGTTGGGATCGGAGGGGGCGCGCGAAGACCGTACCTG
GCCGGGCGGAGTAGGCCCGCCATGGCGCTAGGGCAGGCGATGCAAGGGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1094:31112..32660+ >mRNA_E-siliculosus-1a_F_contig1094.652.1 ID=mRNA_E-siliculosus-1a_F_contig1094.652.1|Name=mRNA_E-siliculosus-1a_F_contig1094.652.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1094:31112..32660+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCAGACACAGCAGGACACACAGAGGAGGGCGCAACGCAGACAGGAGCG
TAACAGCAGACTTGCCATGGATAGGCGGAGAGCGAGAACGGCCTTGTGCA
CCTATTTCTTGGCGGTGGGCTCTTCCAGGGCGTACACCTTTGCGCCCTCG
ATTCTGCATCACCAGACACAGCAGGACACACAGAGGAGGGCGCAACGCAG
ACAGGAGCGTAACAGCAGACTTGCCATGGATAGGCGGAGAGCGAGAACGG
CCTTGTGCACCTATTTCTTGGCGGTGGGCTCTTCCAGGGCGTACACCTTT
GCGCCCTCGATTCTGCATGGTACCCCCCCGGGCGGTACAGGCGCGCGAGC
CCGCGAACCCCCCGGCATGAGGAACCCACTGTCCGGTTCCCGCGCTGTTC
GCCGGGTAAGGGGCTCCATCCGCGGCCGAAACAACGGGCTCAACGGCACC
GGCGGCGGCGGCGGCGGCAGCAGCGGAGTAGGCGGCAGCACCAACACGGG
AAACACCAACAGCATCACCCCGGACGCCGGCGGCCCGGACGGTGGCGGCA
ACACGGCCGCCTCCGCCGCCGCCGGCGGCAGCGGCAGTGGTCCTGCTGTC
GCCGGCCAGAGGACCCCAGAGGTGGGCGCGGCGGGCGCGGCCGGCGTTGG
GATCGGAGGGGGCGCGCGAAGACCGTACCTGGCCGGGCGGAGTAGGCCCG
CCATGGCGCTAGGGCAGGCGATGCAAGGGGGTACCCCCCCGGGCGGTACA
GGCGCGCGAGCCCGCGAACCCCCCGGCATGAGGAACCCACTGTCCGGTTC
CCGCGCTGTTCGCCGGGTAAGGGGCTCCATCCGCGGCCGAAACAACGGGC
TCAACGGCACCGGCGGCGGCGGCGGCGGCAGCAGCGGAGTAGGCGGCAGC
ACCAACACGGGAAACACCAACAGCATCACCCCGGACGCCGGCGGCCCGGA
CGGTGGCGGCAACACGGCCGCCTCCGCCGCCGCCGGCGGCAGCGGCAGTG
GTCCTGCTGTCGCCGGCCAGAGGACCCCAGAGGTGGGCGCGGCGGGCGCG
GCCGGCGTTGGGATCGGAGGGGGCGCGCGAAGACCGTACCTGGCCGGGCG
GAGTAGGCCCGCCATGGCGCTAGGGCAGGCGATGCAAGGG back to top
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