mRNA_E-siliculosus-1a_F_contig1094.650.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1094.650.1 vs. uniprot
Match: A0A6H5L995_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L995_9PHAE) HSP 1 Score: 450 bits (1157), Expect = 1.570e-155 Identity = 250/261 (95.79%), Postives = 251/261 (96.17%), Query Frame = 2 Query: 212 TASGCWALAVLLALYISPSGAFLAPTKAALGCFHQHRSPSSPTCLSMMARDELGSGRSSSSRRGFLEGGAVALLASVAAIGLPEPSVAKGIDLSEVXXXXXXXXMHLGAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLDDSLQQGAKYIESSGDRNAAASAGREALEYLAQTAEYFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSEGGDQS 994
T SGC ALAVLL LY SPSGAFLAPTKAALGCFHQHRS SSPTCLSM ARDEL SG SSSRRGFLEGGAVALLASVAAIGLPEPSVAKGIDLSEVXXXXXXXXMHLGAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLD+SLQQGAKYIESSGDRN AASAGREALEYLAQTAEYFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSEGGDQS
Sbjct: 2 TGSGCRALAVLLTLYSSPSGAFLAPTKAALGCFHQHRSASSPTCLSMTARDELRSGSISSSRRGFLEGGAVALLASVAAIGLPEPSVAKGIDLSEVXXXXXXXXMHLGAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLDESLQQGAKYIESSGDRNTAASAGREALEYLAQTAEYFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSEGGDQS 262
BLAST of mRNA_E-siliculosus-1a_F_contig1094.650.1 vs. uniprot
Match: A0A7S2XY69_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY69_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 7.360e-20 Identity = 55/146 (37.67%), Postives = 89/146 (60.96%), Query Frame = 2 Query: 554 KATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLDDSLQQGAKYIESSGDRNAAASAGREALEYLAQTAEYFPVEVDDRTG----APKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSE 979
K TKPL +CL +V V+++TKQLED +TN + + L++NYKL+++L+QG +Y+ES+ +R A +EALE L EYFP D+ TG + L+ E ++F+V AL +T L+ +LS +P + +A+ + I +
Sbjct: 118 KPTKPLEECLESVALVQLTTKQLEDDITNGQEIGDIPAQAQLLLRNYKLEENLRQGVQYLESNAERVEATKYAKEALEDLILITEYFPESYDNFTGKRLPSSLTLTPEKIKFSVKALSSTTKALEGYLSTMPVEMVAKVKQSIAED 263
BLAST of mRNA_E-siliculosus-1a_F_contig1094.650.1 vs. uniprot
Match: A0A7S3TS97_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TS97_9SPIT) HSP 1 Score: 60.1 bits (144), Expect = 1.770e-6 Identity = 41/146 (28.08%), Postives = 72/146 (49.32%), Query Frame = 2 Query: 554 KATKPLRDCLLNVERVRISTKQLEDTLTN----DGAPPGLTGLVKGLIKNYKLDDSLQQGAKYIESSGDRNAAASAGREALEYLAQTAEYFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSE 979
K+ L++ L + RV+ +T Q E ++ D + + ++ NYKL D + + Y + + A+ AG+EA++ L EYF E+ L+ F V+A+ ATR KLD FL +P++ + AR +++ E
Sbjct: 98 KSVNELQEALYLISRVQEATVQQERLVSTGKFKDMQRNSIKMALNMMLNNYKLGDQIVVASAYASPADNVFKASQAGKEAIDVLETAQEYFAKELK-----VSGLTDTQRSFIVDAMTATRTKLDNFLKFMPAETVQAARKQVEDE 238 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1094.650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1094.650.1 >prot_E-siliculosus-1a_F_contig1094.650.1 ID=prot_E-siliculosus-1a_F_contig1094.650.1|Name=mRNA_E-siliculosus-1a_F_contig1094.650.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=265bp MYATASGCWALAVLLALYISPSGAFLAPTKAALGCFHQHRSPSSPTCLSMback to top mRNA from alignment at E-siliculosus-1a_F_contig1094:22180..25163- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1094.650.1 ID=mRNA_E-siliculosus-1a_F_contig1094.650.1|Name=mRNA_E-siliculosus-1a_F_contig1094.650.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2984bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1094:22180..25163- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1094:22180..25163- >mRNA_E-siliculosus-1a_F_contig1094.650.1 ID=mRNA_E-siliculosus-1a_F_contig1094.650.1|Name=mRNA_E-siliculosus-1a_F_contig1094.650.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1590bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1094:22180..25163- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |