mRNA_E-siliculosus-1a_F_contig10924.644.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10924.644.1
Unique NamemRNA_E-siliculosus-1a_F_contig10924.644.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10924.644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10924contigE-siliculosus-1a_F_contig10924:1762..2035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size144
Model size274
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 orthologEc-14_007060.1
Ec32 ortholog descriptionHypothetical protein
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10924.644.1prot_E-siliculosus-1a_F_contig10924.644.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10924 1840..1983 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.783512-UTR-E-siliculosus-1a_F_contig10924:1761..18391622927594.783512-UTR-E-siliculosus-1a_F_contig10924:1761..1839Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10924 1762..1839 +
1696318603.07155-UTR-E-siliculosus-1a_F_contig10924:1761..18391696318603.07155-UTR-E-siliculosus-1a_F_contig10924:1761..1839Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10924 1762..1839 +
1622927594.8172684-UTR-E-siliculosus-1a_F_contig10924:1983..20351622927594.8172684-UTR-E-siliculosus-1a_F_contig10924:1983..2035Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10924 1984..2035 +
1696318603.1040163-UTR-E-siliculosus-1a_F_contig10924:1983..20351696318603.1040163-UTR-E-siliculosus-1a_F_contig10924:1983..2035Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10924 1984..2035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.801953-CDS-E-siliculosus-1a_F_contig10924:1839..19831622927594.801953-CDS-E-siliculosus-1a_F_contig10924:1839..1983Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10924 1840..1983 +
1696318603.0927498-CDS-E-siliculosus-1a_F_contig10924:1839..19831696318603.0927498-CDS-E-siliculosus-1a_F_contig10924:1839..1983Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10924 1840..1983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10924.644.1

>prot_E-siliculosus-1a_F_contig10924.644.1 ID=prot_E-siliculosus-1a_F_contig10924.644.1|Name=mRNA_E-siliculosus-1a_F_contig10924.644.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=48bp
MRGRYCRPSGRGRRAGSLAEGSRGDGGGAAGGGGGEGGAGGGEGRGG*
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mRNA from alignment at E-siliculosus-1a_F_contig10924:1762..2035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10924.644.1 ID=mRNA_E-siliculosus-1a_F_contig10924.644.1|Name=mRNA_E-siliculosus-1a_F_contig10924.644.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=274bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10924:1762..2035+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCTTGGATCGAGAGCTCCTTTTATCGCGAGATCGAGGAGGCTGCCGG
CGATTCGCGGCAGAAGAGCGGGTTGTTGATGCGGGGGCGTTATTGCCGGC
CTTCGGGACGAGGCCGCCGGGCTGGGAGTTTGGCTGAGGGGTCTCGTGGA
GACGGCGGAGGCGCGGCGGGAGGCGGAGGCGGCGAGGGAGGAGCTGGTGG
CGGCGAGGGGCGGGGTGGGTAGGGAGTTGGTGGAGGCGAGGAGGCGCGCC
GAGGACGCGGAGGGGGGCTATTGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10924:1762..2035+

>mRNA_E-siliculosus-1a_F_contig10924.644.1 ID=mRNA_E-siliculosus-1a_F_contig10924.644.1|Name=mRNA_E-siliculosus-1a_F_contig10924.644.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10924:1762..2035+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGGGGCGTTATTGCCGGCCTTCGGGACGAGGCCGCCGGGCTGGGAG
TTTGGCTGAGGGGTCTCGTGGAGACGGCGGAGGCGCGGCGGGAGGCGGAG
GCGGCGAGGGAGGAGCTGGTGGCGGCGAGGGGCGGGGTGGGTAGATGCGG
GGGCGTTATTGCCGGCCTTCGGGACGAGGCCGCCGGGCTGGGAGTTTGGC
TGAGGGGTCTCGTGGAGACGGCGGAGGCGCGGCGGGAGGCGGAGGCGGCG
AGGGAGGAGCTGGTGGCGGCGAGGGGCGGGGTGGGTAG
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