mRNA_E-siliculosus-1a_F_contig10923.643.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10923.643.1 vs. uniprot
Match: D1J752_ECTSI (50S ribosomal protein L3, chloroplastic n=9 Tax=Ectocarpales TaxID=2877 RepID=D1J752_ECTSI) HSP 1 Score: 276 bits (706), Expect = 8.910e-92 Identity = 204/207 (98.55%), Postives = 206/207 (99.52%), Query Frame = 1 Query: 4 VSIGIFGNKIGMTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIQIGYSKGHTSKFSKAELGHLEKNGLSPXXXXXEYKVNXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNIINSK 624 +SIGIFGNKIGMTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIQIGYSKGHTSKFSKAELGHLEKNGLSPXXXXXEY+V XXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNIINSK Sbjct: 1 MSIGIFGNKIGMTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIQIGYSKGHTSKFSKAELGHLEKNGLSPXXXXXEYRVXXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNIINSK 207
BLAST of mRNA_E-siliculosus-1a_F_contig10923.643.1 vs. uniprot
Match: A0A1L2F1Q4_9PHAE (Ribosomal protein L3 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1Q4_9PHAE) HSP 1 Score: 220 bits (561), Expect = 1.070e-69 Identity = 163/204 (79.90%), Postives = 174/204 (85.29%), Query Frame = 1 Query: 1 LVSIGIFGNKIGMTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIQIGYSKGHTSKFSKAELGHLEKNGLSPXXXXXEYKVNXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNI 612 +VSIGIFGNKIGMTQIFDK+GLAL VTV+ VGPCFITQLKTE NGY+A+QIGY K + KAELGHL KNGL P EY+V NYSL XXXXXXXXXXXXXX GKSIGKGFSGNQKRHKFKRGPMTHGS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TVSK+++LGID KQNLLILKGSVPGK GNLL+I Sbjct: 1 MVSIGIFGNKIGMTQIFDKDGLALAVTVIRVGPCFITQLKTESINGYNAVQIGYLKRQPIRVKKAELGHLTKNGLPPLLHLREYRVPDLNNYSLGQMXXXXXXXXXXXXXXXGKSIGKGFSGNQKRHKFKRGPMTHGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITVSKVQVLGIDEKQNLLILKGSVPGKSGNLLSI 204
BLAST of mRNA_E-siliculosus-1a_F_contig10923.643.1 vs. uniprot
Match: D1GJT2_FUCVE (50S ribosomal protein L3, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJT2_FUCVE) HSP 1 Score: 219 bits (559), Expect = 2.080e-69 Identity = 141/203 (69.46%), Postives = 150/203 (73.89%), Query Frame = 1 Query: 4 VSIGIFGNKIGMTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIQIGYSKGHTSKFSKAELGHLEKNGLSPXXXXXEYKVNXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNI 612 +SIGIFGNKIGMTQIFDK GLALPVTV+ VGPCFITQLKTE+ NGY A+QIGY K K +KAELGHL KNGL P EYKV NYSL +GKSIGKGFSGNQKRH FKRGPMTH XXXXXXXXXXXXXXXXXXXXXXX T+SKLEILGIDSK +LLILKGSVPGK GNLLN+ Sbjct: 1 MSIGIFGNKIGMTQIFDKEGLALPVTVIRVGPCFITQLKTEQLNGYSAVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVINVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNV 203
BLAST of mRNA_E-siliculosus-1a_F_contig10923.643.1 vs. uniprot
Match: A0A0R6MC27_UNDPI (50S ribosomal protein L3, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6MC27_UNDPI) HSP 1 Score: 218 bits (556), Expect = 3.890e-69 Identity = 161/195 (82.56%), Postives = 173/195 (88.72%), Query Frame = 1 Query: 37 MTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIQIGYSKGHTSKFSKAELGHLEKNGLSPXXXXXEYKVNXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNIINS 621 MTQ+FDK+GLALPVTV+S+G CFITQ+KTEK NGY+A+QIG+SKG T KAELGHL+KNGL P EYKV +NYSL XXXXXXXXXXXXX GKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKG+VPGKPGNLLNI+ S Sbjct: 1 MTQVFDKDGLALPVTVISIGSCFITQIKTEKLNGYNAVQIGHSKGRTVNLKKAELGHLKKNGLPPLSDLCEYKVMDLENYSLGQVLXXXXXXXXXXXXXXGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGNVPGKPGNLLNIVPS 195
BLAST of mRNA_E-siliculosus-1a_F_contig10923.643.1 vs. uniprot
Match: A0A8F0JZG8_9PHAE (Ribosomal protein L3 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZG8_9PHAE) HSP 1 Score: 202 bits (514), Expect = 9.180e-63 Identity = 152/193 (78.76%), Postives = 163/193 (84.46%), Query Frame = 1 Query: 37 MTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIQIGYSKGHTSKFSKAELGHLEKNGLSPXXXXXEYKVNXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNII 615 MTQ+FDKNGLALPVTVV VGPC ITQLKTEK NGY+A+QIGYS+G + F+KAELGHL KNGL P EYKV +NYSL XXXXXXXXXXXXXX SIGKGFSG+ KRHKFKRGPMTH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TVSKLE+LGID KQNLLILKGS+PGK GNLLNI+ Sbjct: 1 MTQVFDKNGLALPVTVVRVGPCLITQLKTEKINGYNAVQIGYSQGRITNFNKAELGHLTKNGLPPLSHLHEYKVLDTENYSLGQIXXXXXXXXXXXXXXXXXSIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKITVSKLEVLGIDLKQNLLILKGSIPGKTGNLLNIV 193
BLAST of mRNA_E-siliculosus-1a_F_contig10923.643.1 vs. uniprot
Match: A0A8F0F776_9PHAE (Ribosomal protein L3 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F776_9PHAE) HSP 1 Score: 202 bits (513), Expect = 1.300e-62 Identity = 155/196 (79.08%), Postives = 168/196 (85.71%), Query Frame = 1 Query: 37 MTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIQIGYSKGHTSKFSKAELGHLEKNGLSPXXXXXEYKVNXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNIINSK 624 MTQIF+K GLALPVTV++VGPC IT LKT+ +GY+AIQIGYS+G S+F KAELGHL+KNGL P EYKV +NY + XXXXXXXXXXXXX GKSIGKGFSGN KRHKFKRGPMTH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGID KQNLLILKG+VPGKPGNLLNII S+ Sbjct: 1 MTQIFNKEGLALPVTVINVGPCLITYLKTQNIHGYNAIQIGYSQGRDSQFKKAELGHLKKNGLPPLYHLCEYKVLSTQNYCVGQKIXXXXXXXXXXXXXXGKSIGKGFSGNHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDYKQNLLILKGNVPGKPGNLLNIIPSQ 196
BLAST of mRNA_E-siliculosus-1a_F_contig10923.643.1 vs. uniprot
Match: A0A8F0JYJ1_9PHAE (Ribosomal protein L3 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYJ1_9PHAE) HSP 1 Score: 201 bits (511), Expect = 2.620e-62 Identity = 136/195 (69.74%), Postives = 147/195 (75.38%), Query Frame = 1 Query: 37 MTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIQIGYSKGHTSKFSKAELGHLEKNGLSPXXXXXEYKVNXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNIINS 621 MTQ+FDKNGLALPVTV+ VG C ITQLKTE+ NGY+A+QIGYSKG KAELGHL+KNGL P EY+V ++YSL TGKSIGKGFSGN KRHKFKRGPMTH XXXXXXXXXXXXXXXXXXXXXXXXXXXX TVSKL+ILGID K NLLILKGSVPGKPGNL+ II S Sbjct: 1 MTQVFDKNGLALPVTVIRVGSCVITQLKTEEINGYNAVQIGYSKGQKLNLKKAELGHLKKNGLPPLSHLCEYRVTEQEDYSLGQVLNVDHFQIGQFVNITGKSIGKGFSGNHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAKTITVSKLKILGIDLKNNLLILKGSVPGKPGNLIKIIPS 195
BLAST of mRNA_E-siliculosus-1a_F_contig10923.643.1 vs. uniprot
Match: A0A8E6D6E5_9PHAE (50S ribosomal protein L3, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6E5_9PHAE) HSP 1 Score: 195 bits (496), Expect = 6.970e-60 Identity = 138/207 (66.67%), Postives = 164/207 (79.23%), Query Frame = 1 Query: 4 VSIGIFGNKIGMTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIQIGYSKGHTSKFSKAELGHLEKNGLSPXXXXXEYKVNXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNIINSK 624 +SIGIFG KIG TQ+F GLA+PVTV+ GPC +TQLK+ + +GY+AIQIGYS+ + +KF + +LGHL+KN L EYK+ + YS+ XXXXXXXXXXXXX TGKS+GKGFSGNQKRH FKRGPMTHGS XXXXXXXXXXXXXXXXXXXXXXXX TVS +++LGIDSKQNLL+L+GSVPGKPGNLL I+ S+ Sbjct: 1 MSIGIFGTKIGTTQVFSATGLAVPVTVIHAGPCLVTQLKSHQKDGYNAIQIGYSERNFNKFRRPQLGHLKKNKLPLLQHLGEYKILPTETYSVGQQXXXXXXXXXXXXXVTGKSLGKGFSGNQKRHHFKRGPMTHGSKNXXXXXXXXXXXXXXXXXXXXXXXXRLGGKKTTVSNVKVLGIDSKQNLLVLQGSVPGKPGNLLRIVVSR 207
BLAST of mRNA_E-siliculosus-1a_F_contig10923.643.1 vs. uniprot
Match: A0A7S6ZPA7_9STRA (50S ribosomal protein L3, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA7_9STRA) HSP 1 Score: 191 bits (484), Expect = 4.580e-58 Identity = 122/206 (59.22%), Postives = 144/206 (69.90%), Query Frame = 1 Query: 4 VSIGIFGNKIGMTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIQIGYSKGHTSKFSKAELGHLEKNGLSPXXXXXEYKVNXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNIINS 621 +SIGI GNKIGMTQIFD+ GL +PVTV+ VGPC ITQ+KT + NGY+AIQ+GYS+ K +K + GHL+K G P EYKV+ + L +G+SIGKGFSGNQKRH FKRGPMTH XXXXXXXXXXXXXXXXXXXXXX T+SKL I+GID +NLLI+KG+VPGKPGNLLNI+ S Sbjct: 1 MSIGILGNKIGMTQIFDEEGLTIPVTVIRVGPCKITQIKTHRLNGYNAIQLGYSQVKPEKLTKPKHGHLKKVGCFPLYHLREYKVSKIDKFLLGETLTVDIFKIGQYVNISGQSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXKMAGQYGAKKITISKLRIIGIDKTRNLLIIKGNVPGKPGNLLNIVGS 206
BLAST of mRNA_E-siliculosus-1a_F_contig10923.643.1 vs. uniprot
Match: A0A514CPW3_9STRA (50S ribosomal protein L3, chloroplastic n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A514CPW3_9STRA) HSP 1 Score: 188 bits (478), Expect = 3.830e-57 Identity = 102/205 (49.76%), Postives = 125/205 (60.98%), Query Frame = 1 Query: 10 IGIFGNKIGMTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIQIGYSKGHTSKFSKAELGHLEKNGLSPXXXXXEYKVNXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNIINSK 624 +GI GNK+GMTQIF ++G A PVTV+ VGPC +TQ+KT +T+GY+AIQIGY T +K ELGHL+K+ + P EY +++L XX X +GKSIGKGFSGNQKRH F RGPMTHGS TVSKLE+L IDSK+NLLI+KGSVPGKPGNLL+I +K Sbjct: 2 LGILGNKVGMTQIFTEDGSANPVTVIKVGPCVVTQIKTIETDGYNAIQIGYQNSSTKHLTKPELGHLKKSQIQPLRYLKEYXXXEVNDFTLGXXINXQNFKEGDYVDISGKSIGKGFSGNQKRHNFSRGPMTHGSKNHREPGSIGQGSTPGRVFPGKKMAGQLGGKTTTVSKLEVLKIDSKENLLIVKGSVPGKPGNLLSIKPTK 206 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10923.643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10923.643.1 >prot_E-siliculosus-1a_F_contig10923.643.1 ID=prot_E-siliculosus-1a_F_contig10923.643.1|Name=mRNA_E-siliculosus-1a_F_contig10923.643.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=209bp LVSIGIFGNKIGMTQIFDKNGLALPVTVVSVGPCFITQLKTEKTNGYDAIback to top mRNA from alignment at E-siliculosus-1a_F_contig10923:1429..2055- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10923.643.1 ID=mRNA_E-siliculosus-1a_F_contig10923.643.1|Name=mRNA_E-siliculosus-1a_F_contig10923.643.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=627bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10923:1429..2055- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10923:1429..2055- >mRNA_E-siliculosus-1a_F_contig10923.643.1 ID=mRNA_E-siliculosus-1a_F_contig10923.643.1|Name=mRNA_E-siliculosus-1a_F_contig10923.643.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1254bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10923:1429..2055- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |