mRNA_E-siliculosus-1a_F_contig10923.642.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: D1J751_ECTSI (50S ribosomal protein L4, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J751_ECTSI) HSP 1 Score: 438 bits (1127), Expect = 1.910e-153 Identity = 225/232 (96.98%), Postives = 229/232 (98.71%), Query Frame = 1 Query: 1 MITFLDFYKRLREKSSSRKDKILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696 MITFLDFYKRLREKSSS+KDKILTFPLKLLTGEE NETV+LT QIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEP+ITIIDH+FSSIDNKTN FINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG Sbjct: 1 MITFLDFYKRLREKSSSKKDKILTFPLKLLTGEEKNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPSITIIDHNFSSIDNKTNIFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 232
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A1I9LVD9_9PHAE (50S ribosomal protein L4, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVD9_9PHAE) HSP 1 Score: 380 bits (977), Expect = 1.280e-130 Identity = 189/232 (81.47%), Postives = 210/232 (90.52%), Query Frame = 1 Query: 1 MITFLDFYKRLREKSSSRKDKILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696 MITFL+FYKRL EKSSSRKDK+LTFP+K LTGE N E LT ++KEGQETDNYI+YRAY+AQRTNERQGT NTLTRAEV+GGGRKPWRQKGTG+AR+GSNRSPLWKGGGVSFGPKPKTY NK+NRKEWQLA+R LI+LKEP IT+ID+DFSS++NKTN FI LFK C+I FSKNIT I+P IE+NL K TRNIKTVT+MRADTLNLITLL SDHLFISKDSLKIIEE YNG Sbjct: 1 MITFLNFYKRLTEKSSSRKDKVLTFPIKFLTGENNKEIATLTLKVKEGQETDNYIIYRAYVAQRTNERQGTRNTLTRAEVRGGGRKPWRQKGTGKARSGSNRSPLWKGGGVSFGPKPKTYTNKINRKEWQLAIRALILLKEPIITVIDYDFSSLENKTNIFIQLFKVCNIGFSKNITIILPNIEDNLVKATRNIKTVTLMRADTLNLITLLGSDHLFISKDSLKIIEETYNG 232
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A7T8G5K9_SCYLO (50S ribosomal protein L4, chloroplastic n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5K9_SCYLO) HSP 1 Score: 374 bits (960), Expect = 1.150e-127 Identity = 189/232 (81.47%), Postives = 207/232 (89.22%), Query Frame = 1 Query: 1 MITFLDFYKRLREKSSSRKDKILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696 MITFLDFYKRL EKS+SRKDK+LTFP+K L G +N ET LT Q+KE QET+NYI+YRAYIAQR NERQGTV+TLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPK Y NKLNRKEWQLAVR LI+LKEP I +IDHDF+S+D KT FINLFK C+I+FS+NITFIVP IEE+LFK TRNIKTV +MRADTLNLIT+L SDHL ISKDSLKIIEE YNG Sbjct: 25 MITFLDFYKRLTEKSNSRKDKVLTFPIKPLVGGDNKETATLTLQVKEKQETENYIIYRAYIAQRINERQGTVSTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKLYTNKLNRKEWQLAVRSLIMLKEPIINVIDHDFNSMDIKTKAFINLFKTCNINFSQNITFIVPRIEESLFKATRNIKTVKLMRADTLNLITILRSDHLLISKDSLKIIEETYNG 256
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A6B7EYM7_9PHAE (50S ribosomal protein L4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYM7_9PHAE) HSP 1 Score: 362 bits (929), Expect = 2.720e-123 Identity = 190/235 (80.85%), Postives = 209/235 (88.94%), Query Frame = 1 Query: 1 MITFLDFYKRLREKSSS--RKDKILTFPLKLLTGEENN-ETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696 MITFLDFYKRL +KS+ +KDKILTFP K+LTG + + ETV LT +IKEGQET+NYI+YRAYIAQRTNERQGTVNTLTRAEVKGGGRKPW+QKGTGRARAGSNRSPLWKGGGVSFGPKPK Y NK+NRKEWQLAVR LIILKEP IT+IDHDFSSI KTN FINLF+ C+++FS+ IT IVP I E+LFK TRNIKT IMRADTLNLITLLESD+LFISKDSLKIIEE YNG Sbjct: 1 MITFLDFYKRLTKKSNPNVKKDKILTFPTKVLTGSDTSKETVTLTLKIKEGQETNNYIIYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWKQKGTGRARAGSNRSPLWKGGGVSFGPKPKIYTNKINRKEWQLAVRSLIILKEPIITVIDHDFSSI-TKTNDFINLFQTCNVNFSQKITLIVPTIAESLFKATRNIKTTNIMRADTLNLITLLESDYLFISKDSLKIIEETYNG 234
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A0R6LUU1_UNDPI (50S ribosomal protein L4, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUU1_UNDPI) HSP 1 Score: 258 bits (658), Expect = 1.850e-82 Identity = 130/212 (61.32%), Postives = 168/212 (79.25%), Query Frame = 1 Query: 61 KILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696 KILTFP+K+LTGEE+ + + LT ++KE T NY++ RAY+AQR+NERQGT NTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPK Y +K+NRKEWQL++R L+I K+ +ITI+D+ F+ ++ KT+ I + +I+ +N +VP I+E L K TRNIKT+ ++ A+ LNL +L + +L I+KDSLK IEE YNG Sbjct: 5 KILTFPVKILTGEESGDEITLTLKLKEATNTINYVIQRAYLAQRSNERQGTANTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKFYSSKINRKEWQLSLRSLLIAKQKDITIVDN-FNFLEYKTSNIIKVLNTFNINLFENTLIVVPKIDEKLLKSTRNIKTIKLIVANNLNLKQILLAKNLLITKDSLKTIEETYNG 215
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A8F0FA21_9PHAE (Ribosomal protein L4 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FA21_9PHAE) HSP 1 Score: 253 bits (645), Expect = 1.720e-80 Identity = 124/212 (58.49%), Postives = 166/212 (78.30%), Query Frame = 1 Query: 61 KILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696 K++TFP+K +TG+E+ + + L ++K+ T+NY++ RAY+ QR NERQGT NTLTRAEVKGGGRKPW+QKGTGRARAGSN SPLWKGGGVSFGPKPK Y NK+NRKEWQL++R L++ KE +IT++++ F+ +D KTN I + + +I+ +N IVP IEE L K T+NIKT+ ++ A+ LNL +L + +LFI+KDSLK IEE YNG Sbjct: 5 KLITFPIKSITGKESGDKITLNLKLKDVVTTNNYVIQRAYLTQRLNERQGTANTLTRAEVKGGGRKPWKQKGTGRARAGSNTSPLWKGGGVSFGPKPKLYSNKINRKEWQLSLRSLLVAKEKDITVLEN-FNLLDYKTNDIIKILQSFNINLFENTLIIVPKIEEKLIKSTKNIKTIKVLVANNLNLKQILLAQNLFITKDSLKTIEETYNG 215
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A8F0F722_AKKLU (Ribosomal protein L4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F722_AKKLU) HSP 1 Score: 251 bits (640), Expect = 9.810e-80 Identity = 128/212 (60.38%), Postives = 161/212 (75.94%), Query Frame = 1 Query: 61 KILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696 KILTFP+KLLTG+E+ + + LT + KE + NY++ RAY+ QR NERQGT NTLTRAEVKGGGRKPWRQKGTGRARAGSN SPLWKGGGVSFGPKPK Y NK+NRKEWQL++R L+I K+ +IT+ID+ + ++ KT+ I DI+ N IVP IE+ L K TRNIKT+ ++ A+ LNL +L + +L ++KDSLK IEE YNG Sbjct: 5 KILTFPIKLLTGKESGDKITLTLKSKEITDKSNYVIQRAYLTQRYNERQGTANTLTRAEVKGGGRKPWRQKGTGRARAGSNTSPLWKGGGVSFGPKPKLYSNKINRKEWQLSLRSLLIAKQKDITVIDN-INPLEYKTDNIIKTLNSFDINLFDNTLLIVPKIEDKLLKSTRNIKTIKVIVANNLNLKQILLAKNLLVTKDSLKTIEETYNG 215
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A8F0FAT9_9PHAE (Ribosomal protein L4 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT9_9PHAE) HSP 1 Score: 248 bits (634), Expect = 7.920e-79 Identity = 129/213 (60.56%), Postives = 161/213 (75.59%), Query Frame = 1 Query: 58 DKILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696 +KILTFP+KLLTGEE+ + + LT + KE T NYI++RAY+ Q NERQG NTLTR+EV+GGGRKPW+QKGTGRARAGS SPLWKGGGVSFGPKPK Y NK+NRKEWQL +R L+I K+ +ITII++ FSS + KTN I K +I + IVP I+E L K TRNIKT+ ++ A+ LN+ +L + +LFI+KDSLK IEE YNG Sbjct: 4 EKILTFPIKLLTGEESGDNITLTLKSKELSNTSNYIIHRAYLTQLYNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKPKLYSNKINRKEWQLGLRNLLIAKQKDITIINN-FSSTNYKTNDIIKALKVFNIKIFEKTLIIVPKIDEKLLKSTRNIKTIKLIVANNLNIKQILLAKNLFITKDSLKTIEETYNG 215
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: D1GJT1_FUCVE (50S ribosomal protein L4, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJT1_FUCVE) HSP 1 Score: 244 bits (622), Expect = 5.170e-77 Identity = 123/213 (57.75%), Postives = 162/213 (76.06%), Query Frame = 1 Query: 58 DKILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696 +K LTFP+KLLTG E+ + + LT ++K+ ET+NY+++RAY+ QR NERQGT +TLTRAEV+GGGRKP RQKG GRARAGSNRSPLWKGGGVSFGPKPK Y NK+NRKEW+L +R L+I K+ NI I+D+ + + KT I + K +I+ S+ FI+P IE+NL + T NIKT+ + A LNL +L + +L ++KDSLKIIE+ YNG Sbjct: 4 EKTLTFPIKLLTGNESKDKITLTLKVKDANETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPLRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIVDN-LNITEYKTKNIIKILKIFNINLSEKTLFILPKIEKNLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 215
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A8F0JXJ6_9PHAE (Ribosomal protein L4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXJ6_9PHAE) HSP 1 Score: 234 bits (598), Expect = 2.490e-73 Identity = 120/216 (55.56%), Postives = 159/216 (73.61%), Query Frame = 1 Query: 58 DKILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG*NK 705 +KILTFP+K LTG E+ + + + ++ E T NYI+ RAY+ QR NERQGT NTLTRAEV+GGGRKPWRQKGTG+ARAGSN SPLW+ GGVSFGPKPK Y NK+NRKEWQL +R L+I K+ NI +++ DF+ ++ +T T + DI +N FIV +E++L K T NIK + ++ A+ LN+ +L + +LFI++ SLKIIEE YNG NK Sbjct: 4 EKILTFPIKDLTGAESGKKIKVILKLTEQNNTSNYIIQRAYLTQRYNERQGTANTLTRAEVRGGGRKPWRQKGTGKARAGSNTSPLWRNGGVSFGPKPKEYSNKINRKEWQLGLRNLLIKKQNNIVVLN-DFNFVNFRTKTIKQSLETFDIKLFENTLFIVSKLEKDLLKATCNIKNIKVLLANNLNIKQILFAKNLFITETSLKIIEETYNGPNK 218 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10923.642.1 >prot_E-siliculosus-1a_F_contig10923.642.1 ID=prot_E-siliculosus-1a_F_contig10923.642.1|Name=mRNA_E-siliculosus-1a_F_contig10923.642.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=233bp MITFLDFYKRLREKSSSRKDKILTFPLKLLTGEENNETVNLTFQIKEGQEback to top mRNA from alignment at E-siliculosus-1a_F_contig10923:216..1206- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10923.642.1 ID=mRNA_E-siliculosus-1a_F_contig10923.642.1|Name=mRNA_E-siliculosus-1a_F_contig10923.642.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=991bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10923:216..1206- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10923:216..1206- >mRNA_E-siliculosus-1a_F_contig10923.642.1 ID=mRNA_E-siliculosus-1a_F_contig10923.642.1|Name=mRNA_E-siliculosus-1a_F_contig10923.642.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1398bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10923:216..1206- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |