mRNA_E-siliculosus-1a_F_contig10921.641.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10921.641.1 vs. uniprot
Match: D8LT21_ECTSI (Polyketide_cyc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT21_ECTSI) HSP 1 Score: 236 bits (603), Expect = 4.700e-76 Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 1 Query: 1 VPKVTECKNYETETLRNGTEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIRE 339
VPKVTECKNYETETLRNGTEIIKTNLKLNVFGVKLNSFFYHTYFPSKSS+TWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIRE
Sbjct: 124 VPKVTECKNYETETLRNGTEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSMTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIRE 236
BLAST of mRNA_E-siliculosus-1a_F_contig10921.641.1 vs. uniprot
Match: A0A835Z7Q3_9STRA (Polyketide_cyc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q3_9STRA) HSP 1 Score: 157 bits (398), Expect = 2.120e-45 Identity = 71/115 (61.74%), Postives = 87/115 (75.65%), Query Frame = 1 Query: 1 VPKVTECKNYETETLRNGTEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQ--ADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIRE 339
VPKV +C NYE ET RNGTE IKT + +NVFG K ++ YHTYF S SSLTWTLDY ++STLDDSVG+W+V P + KQ +WSRVYYS LR+P W+PGIV+ +L KKA+ E
Sbjct: 95 VPKVVKCNNYEVETFRNGTEAIKTRMVMNVFGAKFDNHIYHTYFKSLSSLTWTLDYARRSTLDDSVGYWYVEPCPDKSKQDVQEWSRVYYSCMLRVPKWVPGIVVNFLEKKAVSE 209
BLAST of mRNA_E-siliculosus-1a_F_contig10921.641.1 vs. uniprot
Match: A0A4D9DD14_9STRA (Polyketide_cyc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DD14_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.130e-26 Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 1 VPKVTECKNYETE-TLRNGTEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKA 330
VP+V+ C+NY + G + I T ++L V G + F +H YFP +++ WTLDY ++S LDDSVG+WHV HP D++ WSRVYYS+ +R+ SW+P V L +A
Sbjct: 106 VPRVSLCENYRVQDNYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDRE-HWSRVYYSIDMRLKSWMPSFVKNVLKNQA 215
BLAST of mRNA_E-siliculosus-1a_F_contig10921.641.1 vs. uniprot
Match: A0A4D9CYH6_9STRA (Polyketide_cyc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYH6_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.750e-26 Identity = 50/111 (45.05%), Postives = 70/111 (63.06%), Query Frame = 1 Query: 1 VPKVTECKNYETETLRNGTEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAI 333
VP V +C NY L +G ++T L++ G KL F H Y PS +LTWTLDY ++S L+D+ G+W V + K DWSRV+YSV LRIP+W+P +V+ LN +A+
Sbjct: 142 VPNVAQCGNYAKRKLMHGDVELRTRYVLSIIGFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGKVGDWSRVFYSVDLRIPAWVPQLVVNILNTQAL 252
BLAST of mRNA_E-siliculosus-1a_F_contig10921.641.1 vs. uniprot
Match: A0A7S0I6R2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I6R2_9EUKA) HSP 1 Score: 109 bits (272), Expect = 2.010e-26 Identity = 55/113 (48.67%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 1 VPKVTECKNYETETLRNGTEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIRE 339
V V EC Y+T T RNGT+ I+T +KL V GV L F HTY P LTWTLDY + S L DSVG+W V H + SRV+YSV +PSW+PG V+ + KKA+ +
Sbjct: 117 VTGVQECSVYDTSTHRNGTQTIRTRMKLGVMGVSLEYFIEHTYAPRLGVLTWTLDYARLSDLIDSVGYWAVVPHA---RTPGASRVFYSVDAALPSWVPGFVVTAVTKKALTD 226
BLAST of mRNA_E-siliculosus-1a_F_contig10921.641.1 vs. uniprot
Match: A0A7S2R0C2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0C2_9STRA) HSP 1 Score: 105 bits (261), Expect = 7.170e-25 Identity = 50/116 (43.10%), Postives = 74/116 (63.79%), Query Frame = 1 Query: 1 VPKVTECKNYETETLRNG-----TEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAI 333
VPK + +NY+ ++ +EII T +K+ + +KL F H Y+PS +SLTWTLDYTKKS DDS G+W++ HP DK W+RVYYSV++ + WIP + +++ KA+
Sbjct: 108 VPKTVDSRNYDVTKMKPSKKDPLSEIIFTRMKVGLPLLKLEFFIKHLYYPSLNSLTWTLDYTKKSDFDDSCGYWYIIPHP--DKPQSWTRVYYSVEVSMFDWIPKFALDFISAKAL 221
BLAST of mRNA_E-siliculosus-1a_F_contig10921.641.1 vs. uniprot
Match: A0A7S2E2U9_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E2U9_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.290e-23 Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1 Query: 97 VKLNSFFYHTYFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIRE 339
+KL F H YFPS +SLTWTLDYTKKS DDS G+W++ HP DK DW+RVYYSV++ + W+P V+ +++ KA+ +
Sbjct: 9 LKLEFFIKHLYFPSLNSLTWTLDYTKKSDFDDSCGYWYIVPHP--DKPEDWTRVYYSVEVAMFDWVPKFVVDFMSSKALTD 87
BLAST of mRNA_E-siliculosus-1a_F_contig10921.641.1 vs. uniprot
Match: A0A1E7ERZ4_9STRA (Polyketide_cyc domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ERZ4_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.360e-22 Identity = 46/113 (40.71%), Postives = 72/113 (63.72%), Query Frame = 1 Query: 1 VPKVTECKNYETETLRNGTEIIKTNLKLNVF-GVKLNSFFYHTYFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIR 336
VPKV+EC+NY + +GT +KT + + V G SF+ HTY P+K S+TW LDY KKS DD G WH+ HP++ D +RV+Y+ +++ +PG V+ +++K A++
Sbjct: 42 VPKVSECENYFEKENEDGTCTMKTKMGVKVIPGYGYTSFYDHTYSPAKDSVTWRLDYDKKSDFDDVSGHWHLEDHPTKP---DCTRVFYACDIKLKGSVPGPVVNFVSKSALK 151
BLAST of mRNA_E-siliculosus-1a_F_contig10921.641.1 vs. uniprot
Match: A0A6U4DG12_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4DG12_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.400e-22 Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = 1 Query: 1 VPKVTECKNYETE----TLRNGTE-IIKTNLKLNVFGVKLNSFFY-HTYFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIRE 339
VP+ ECKNY+ + T R+ E I T K+ + + SF+ H Y+P+ SSLTWTLDY+KKS DDSVG+W+V HP + WSRVYYS+ + + W+P V+ +++ KA+ +
Sbjct: 126 VPRTFECKNYDEQKHKATKRDPLEQTIYTKFKVGLPLIPKMSFYVKHLYYPTLSSLTWTLDYSKKSDFDDSVGYWYVVPHPDR---LGWSRVYYSIAVSMFDWVPKTVVNFMSTKALTD 241
BLAST of mRNA_E-siliculosus-1a_F_contig10921.641.1 vs. uniprot
Match: A0A7S3PX78_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX78_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 8.120e-22 Identity = 48/117 (41.03%), Postives = 72/117 (61.54%), Query Frame = 1 Query: 4 PKVTECKNYETETLRNG-----TEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIRE 339
PK E KNY+ E ++ ++II T LK+ +KL F H Y+P +SLTWTLDYTKKS +DS GFW+V HP+ +R+YYSV++ + W+P V+ +++ KA+ +
Sbjct: 98 PKTIESKNYKVENVKPTKKDPLSQIIFTRLKVGFPVLKLEFFIKHLYYPDLNSLTWTLDYTKKSDFNDSCGFWYVLPHPNDPDNR--TRLYYSVEISMFDWVPKFVVDFMSTKALTD 212 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10921.641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10921.641.1 >prot_E-siliculosus-1a_F_contig10921.641.1 ID=prot_E-siliculosus-1a_F_contig10921.641.1|Name=mRNA_E-siliculosus-1a_F_contig10921.641.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=113bp VPKVTECKNYETETLRNGTEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSLback to top mRNA from alignment at E-siliculosus-1a_F_contig10921:109..2118+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10921.641.1 ID=mRNA_E-siliculosus-1a_F_contig10921.641.1|Name=mRNA_E-siliculosus-1a_F_contig10921.641.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2010bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10921:109..2118+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10921:109..2118+ >mRNA_E-siliculosus-1a_F_contig10921.641.1 ID=mRNA_E-siliculosus-1a_F_contig10921.641.1|Name=mRNA_E-siliculosus-1a_F_contig10921.641.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10921:109..2118+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |