mRNA_E-siliculosus-1a_F_contig1092.638.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: W7TFL2_9STRA (DUF1990 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFL2_9STRA) HSP 1 Score: 117 bits (294), Expect = 2.840e-25 Identity = 78/222 (35.14%), Postives = 113/222 (50.90%), Query Frame = 1 Query: 406 LPSLRLIFKHSETALTGFLSEIATRSFNHDHVGITAVQPPL----CAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWSANPCRLVYAHWDRELPRSLGKGRFSSLGFSTVVGHLIEGEERFSVEFRE-QDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVAE 1056
LP LR+ + HS + +L + R FNH +VG+T P L +GF+V +R LLG G + Y L + IVN W EV + G+ +++ ++ YG+LW+ NP R V H E P G +++ ST+ GHL+EGEERF V F + VW D+ S S+G+ LG++ MPV+RP+Q F R M +LV E
Sbjct: 167 LPRLRMGWPHSSRQVQHYLVALRQRKFNHMYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETY------ALAKDKIVN-WSWGE-EVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCH---EKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLVGE 377
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: A0A0G4GX11_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GX11_VITBC) HSP 1 Score: 104 bits (260), Expect = 1.320e-21 Identity = 82/276 (29.71%), Postives = 130/276 (47.10%), Query Frame = 1 Query: 334 LALGSLCF-VAAHVADAKFHGR-TAWLPSLRLIFKHSETALTGFLSEIATRSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWSANPCRLVYAHWDRELPRSLGKGR-FSSLGFSTVVGHLIEGEERFSVEFRE--------------------------------QDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVAE 1056
+AL +LC V+ H + A R +A +P L++ +HS+ A+ L I R NH V T ++ P ++ + P + VN +R L+G G K Y A R L + I L+W ++ + G + T K YG+ + NPC Y D+ R G+ ++++G+STV GHL+ GEERF+V + + + VW ++YS SR SGVLG++A +RP+Q+ F A +M VA+
Sbjct: 4 VALLNLCILVSPHASTAASGVRPSASIPMLKVGQRHSDDAIFDALGTIKGRPPNHPFVRGTLLRYP-----TSSMAPSSYMVNHKRFLIGHGEKAYHFASRALLSWQLINESLEWIRID---------RRGEAVTTCAKAYGVS-AINPCLYQYELIDQRAARPSGREVVYTAVGYSTVKGHLLAGEERFTVAWNQTPRKGGPVSRIFGLRKQRPANDSDSEGDGIESEKDGVWFEVYSYSRPSGVLGRLAAVAVRPLQRRFAADLAAKMPAYVAK 264
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: A0A8J6CD17_DIALT (DUF1990 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CD17_DIALT) HSP 1 Score: 100 bits (250), Expect = 7.880e-21 Identity = 72/205 (35.12%), Postives = 108/205 (52.68%), Query Frame = 1 Query: 406 LPSLRLIFKHSETALTGFLSEIATRSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWSANPCRLVYAHWDRELPRSLGKGRFSSLGFSTVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFA 1020
LP++R I + S + F+ FN T Q + S+ P ++ R ++G G + YDRA R + +V + WA++ Q + L TVVKCY +WS NPCR+ + +LG R S+L ++T+ GHL+EGEE F V E+D V + + S+S+GSGVLGK+A+P I PI++AF A
Sbjct: 12 LPAVR-ITRPSADQIDAFVQRQRDTGFN------TREQGTILHYLSSGQRPHHLQLCERAAVIGRGQEAYDRARRALAKGELLVG-VDWAAVHFLAQPA----VARDLATVVKCYRCVWSLNPCRVTHV--------ALGTTR-STLAYATLDGHLLEGEEAFDVRL-ERDGAVHVRVTSLSKGSGVLGKLAVPFIIPIRRAFLA 194
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: A0A061RK60_9CHLO (Upf0548 protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RK60_9CHLO) HSP 1 Score: 87.8 bits (216), Expect = 3.380e-16 Identity = 63/202 (31.19%), Postives = 100/202 (49.50%), Query Frame = 1 Query: 478 RSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWSANPCRLVYAH-WDRE-LPRSLG--------KGRFSSLGFSTVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVA 1053
R FN++HVG T PPL + + + V+ R LG+G VY RA R +L W S+E + K + VV ++W+ NP ++VY +RE L S G + S + GHL+ GEERFSVE+ + D +VW ++Y+ S+ + +L K P++R +QK F + + M++ V+
Sbjct: 24 RGFNYEHVGSTYSAPPL----PDKLRDQNWNVDHTRVKLGSGKMVYRRAKSAVQEWRHF--QLGWTSVEPTTPILKDSK-----VCVVARALLVWTRNPLQIVYVREGNREVLSASAGPDGSPATTRAEVYSFAHGCLGGHLLAGEERFSVEWHKDDDSVWYEIYTFSKPAHLLSKATYPIVRGLQKKFGSDSAKAMMQEVS 214
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: R1E3Q5_EMIHU (DUF1990 domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E3Q5_EMIHU) HSP 1 Score: 87.8 bits (216), Expect = 5.520e-16 Identity = 72/211 (34.12%), Postives = 103/211 (48.82%), Query Frame = 1 Query: 436 SETALTGFLSEIATRSFNHD-HVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYG----ILWSANPCRLVYAHWDRELPRSLGKGRFSSLGFSTVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVA 1053
S+ +LT F + IA R+ NHD H+ A P P +L RV A R LG G + RA R L + W+++ V + R L+T+ +LW +NPCR V R +G+ R S+G+ST+ GHL+EGEE+ V + + V ++ S SRG+G LGK+ P + Q+ FF QCR M R A
Sbjct: 24 SDESLTAFAASIADRAINHDIHL---ARAPASGTPARSL------RVIAMRVPLGHGRACWRRARR-RLLSWEMHEGSTWSAVLVEDPPGR------SLVTLAALPSPRLPLLWVSNPCRAVR--------RRVGRRR-CSVGYSTLSGHLLEGEEKMDVVWSRETDEVAFEVVSHSRGAGPLGKLLFPALSSTQRRFFREQCRCMQRAAA 209
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: A0A7S0RDM0_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RDM0_9CHLO) HSP 1 Score: 80.5 bits (197), Expect = 1.160e-13 Identity = 60/216 (27.78%), Postives = 103/216 (47.69%), Query Frame = 1 Query: 424 IFKHSETALTGFLSEIATRSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWSANPCRLVYAHWDRELPRSLGKGRFSSL--------------GFSTVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQC 1029
+F+ S+ + L + F + H G + PPL P ST G++V+ R LG GS Y+RA + +V + + + A+ D+ E + V LW+ +P ++VY +L + GKG+ + G + GH++ GEERF+VE+ E+D +VW D+ + S+ +G L ++ P++R Q+ F QC
Sbjct: 6 LFRPSKETVKQTLQDGQKLGFCYPHQGASKDFPPL--PPST--TNYGYKVDHNRVKLGHGSAAYERAKK-------LVKKWEHFQLGWAQVDADTAIEEGSPVCVTAQVAFLWTRHPLQVVYVE---DLEKGKGKGKQPRIVSPAGKSCNARYTFGHGCLKGHMLAGEERFAVEWLEEDDSVWYDVAAFSKPAGPLSTLSYPLVRLFQRHF--AQC 205
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: D8LQ57_ECTSI (DUF1990 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ57_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 1.390e-13 Identity = 62/244 (25.41%), Postives = 100/244 (40.98%), Query Frame = 1 Query: 487 NHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVK-CYGILWSANPCRLVYAH----------------------------------------------------WDRELPRSLGKGRFSSLGFSTVVGHLIEGEERFSVEF---REQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLV 1050
NH G + + +GF+ R LG+G + Y R LR + + WA + + ++ R + L+T+ K C G++W NPC+++Y W LP KGR S++ ++T +GHLI+GEER V D +VW ++YSVSRG+G++G + P ++ +Q+ FF Q M R+V
Sbjct: 50 NHAFAGFSDIAAAXXXXXXXXXXXQGFQERTVRAHLGSGKETYARGREALLRWQ-MHEGSSWARIFLGQRPPRPALQ-RNLVTIAKACAGLVWCINPCQVLYERNDVALRFIAPPGADANRSLDDGEARPVENTKRVMGGGGGALWAGKRPTSAPSWASFLPGVKHKGRQSAVAYATKMGHLIQGEERMRVLHFCGPGGDDSVWFEVYSVSRGAGLVGGLVFPFVQSMQRRFFREQAETMKRVV 291
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: A0A7S1X6Y4_9CHLO (Hypothetical protein n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X6Y4_9CHLO) HSP 1 Score: 80.1 bits (196), Expect = 2.180e-13 Identity = 60/217 (27.65%), Postives = 104/217 (47.93%), Query Frame = 1 Query: 460 LSEIATRSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMG--------------LLTVVKCYGILWSANPCRLVYA-HWDRELPRSLGKGRFSSLGFS----TVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVA 1053
+S + + FN+ HVG T PPL +V + + V+ R +G G Y+ R + +L W +++ + + + K + + VV + W+ NP +VYA R++P S GKG ++ FS + GHL+ GEERF++E+R+ D +VW ++Y+ S+ + L PV+R +QK F + M R ++
Sbjct: 18 VSHGSRQGFNYRHVGKTEGAPPL----DDELVRERWTVDHTRVQVGKGRAAYEEGKRALKSWQHF--QLGWTTVDASTRVEKGSKARVSPSVSAEPSRVCSAAQVCVVARAVLPWTRNPLEIVYAKEGSRKVPASDGKGGTNAKVFSFAHGCLGGHLLAGEERFAMEWRKDDDSVWYEIYTFSKPAHALSLATYPVVRLLQKKFASDSTAAMQRTLS 228
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: I0YZW6_COCSC (DUF1990 domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZW6_COCSC) HSP 1 Score: 79.0 bits (193), Expect = 4.270e-13 Identity = 48/166 (28.92%), Postives = 86/166 (51.81%), Query Frame = 1 Query: 559 KGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRR--WKEGMGLLTVVKCYGILWSANPCRLVYAHWDREL------------PRSLGKGRFSSLGFSTVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAF 1014
KG++ + R +G G + Y +A + V+ +W M + D+ R K G ++ + + G+LW NP R++YA ++ L P +G LG +T+ GH + GEERFSV++ ++D +VW ++Y++SR + +L + P+ R Q+ F
Sbjct: 47 KGWQSDYDRVQVGKGKQAYRKA-------KDFVS--EWQHMGLGWVDTNRPAVKVGEHVIVMAQVLGLLWMCNPLRILYAKEEKGLIPAAAMLRARRQPACTSRGLRFDLGQTTLEGHSLAGEERFSVQWSKEDDSVWYEIYAISRPATLLALASYPLTRYYQQRF 203
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: A0A7V9UWY9_9BACT (DUF1990 domain-containing protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7V9UWY9_9BACT) HSP 1 Score: 77.8 bits (190), Expect = 6.870e-13 Identity = 57/212 (26.89%), Postives = 95/212 (44.81%), Query Frame = 1 Query: 424 IFKHSETALTGFLSEIATRSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWSANPCRLVYAHWDRELPRSLGKGRFSSLGFSTVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVAEK 1059
+F+ S+ + F++ F++ VG + + +P G+ +N R LG G+ + RA + L+ + RL+W + + ++ V+ + S NPCR++Y L + G F T+ GH EGEERF VE+R D +VW ++ S +R +L KI P + Q+ F R ML V +K
Sbjct: 7 LFEPSDEQIENFVAAQRDLPFSYREVGASQSR-----------IPAGYPINHHRIQLGIGADAFARA-KAALQS-WTMYRLEWTHLYPINPPIAVGE----VVCVIANHRFCRSLNPCRIIYV-----LEEAGGAAERYGFAFGTLPGHSEEGEERFIVEWRRDDDSVWYEILSFARPHHILAKIGFPFVGLFQQKFGIDSKRAMLGAVKDK 196 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1092.638.1 >prot_E-siliculosus-1a_F_contig1092.638.1 ID=prot_E-siliculosus-1a_F_contig1092.638.1|Name=mRNA_E-siliculosus-1a_F_contig1092.638.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=250bp MWTPTWLALGSLCFVAAHVADAKFHGRTAWLPSLRLIFKHSETALTGFLSback to top mRNA from alignment at E-siliculosus-1a_F_contig1092:15641..20259- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1092.638.1 ID=mRNA_E-siliculosus-1a_F_contig1092.638.1|Name=mRNA_E-siliculosus-1a_F_contig1092.638.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4619bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1092:15641..20259- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1092:15641..20259- >mRNA_E-siliculosus-1a_F_contig1092.638.1 ID=mRNA_E-siliculosus-1a_F_contig1092.638.1|Name=mRNA_E-siliculosus-1a_F_contig1092.638.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1500bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1092:15641..20259- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |