mRNA_E-siliculosus-1a_F_contig1091.633.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: D7FWE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE0_ECTSI) HSP 1 Score: 246 bits (628), Expect = 2.400e-72 Identity = 161/183 (87.98%), Postives = 166/183 (90.71%), Query Frame = 1 Query: 1 VKAKSTLAFQQLPRRSSPTAATSAARAAPEAVSRAVNALTKDLYGVGPATASAVLAAGCGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKAASLGTPWDAERVRRALWSCAMHSRFGMTVPPV-------SPTGTAAAXXXXXXXXXXXXXXXXXXXXXXXXXGAEAATKKQKSRPH 528
VKAKSTLAFQQLPR S P++ T+AARA+PEAVSRAVNALTKDLYGVGPATASAVLAAGCGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKA SLGTPWDAERVR+ALWSCAMHSRFGMTVPPV SP TA XXXXXXXXXXXXXXXXXXXXXXX GAEAATKKQKSRPH
Sbjct: 103 VKAKSTLAFQQLPRPSLPSSPTAAARASPEAVSRAVNALTKDLYGVGPATASAVLAAGCGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKAVSLGTPWDAERVRKALWSCAMHSRFGMTVPPVPTGATAASPQETAXXXXXXXXXXXXXXXXXXXXXXXXXADGAEAATKKQKSRPH 285
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5L062_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L062_9PHAE) HSP 1 Score: 239 bits (610), Expect = 3.480e-71 Identity = 159/176 (90.34%), Postives = 163/176 (92.61%), Query Frame = 1 Query: 1 VKAKSTLAFQQLPRRSSPTAATSAARAAPEAVSRAVNALTKDLYGVGPATASAVLAAGCGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKAASLGTPWDAERVRRALWSCAMHSRFGMTVPPVSPTGTAAAXXXXXXXXXXXXXXXXXXXXXXXXXGAEAATKKQKSRPH 528
VKAKSTLAFQQLPR SSPT AT+AARA+PEAVSRAVNALTKDLYGVGPATASAVLAA CGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKAASLGTPWDAERVR+A+WSCAMHSRFGMTVPPVSP XXXXXXXXXXXXXXXXXXXXXXXXX A TKKQKSRPH
Sbjct: 8 VKAKSTLAFQQLPRPSSPTTATAAARASPEAVSRAVNALTKDLYGVGPATASAVLAAECGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKAASLGTPWDAERVRKAIWSCAMHSRFGMTVPPVSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-TKKQKSRPH 182
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE) HSP 1 Score: 133 bits (335), Expect = 5.450e-29 Identity = 69/93 (74.19%), Postives = 72/93 (77.42%), Query Frame = -1 Query: 688 RLLQPVVTQKDPSLPSPPAVRCLRFFNARRVQRSL-LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGDRVHVLE 963
RLLQPVVTQK PSLPSPPAV CLRF + LCTHELALST PGAEAREKLT QEK A+AG+RT DLTS RFRGYQLDHRGDR E
Sbjct: 123 RLLQPVVTQKSPSLPSPPAVLCLRFLMREQFSTFFPLCTHELALSTRPGAEAREKLTLQEKLAYAGVRTSDLTSRRFRGYQLDHRGDRPDCQE 215
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5JLU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU5_9PHAE) HSP 1 Score: 107 bits (266), Expect = 5.960e-24 Identity = 62/93 (66.67%), Postives = 64/93 (68.82%), Query Frame = -1 Query: 706 RLLQPVVTQKDPSLPSPPAVRCLRFFNARRVQRSL-------LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGD 963
RLLQPVVTQK P LPS LR+F V LCTHELALST PGAEAREKL QEK A+AGIRTPDLTS RFR YQLDHRGD
Sbjct: 14 RLLQPVVTQKSPPLPS-----LLRYFVVVVVFTLKEFSTLFPLCTHELALSTRPGAEAREKLNVQEKLAYAGIRTPDLTSRRFRSYQLDHRGD 101
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5JMV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV9_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 2.300e-20 Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = -1 Query: 703 LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGDR 858
LCTHELALST PG EAREKLT QEK A+AGIRTPDLTS RFRGYQLDHRGDR
Sbjct: 11 LCTHELALSTRPGTEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDR 62
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5JZN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN8_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 2.180e-18 Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = -1 Query: 706 LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGD 858
L THELALST PGAEAREKLT QEK A+AG RTPDLTS RFRGYQLDHRGD
Sbjct: 11 LRTHELALSTRPGAEAREKLTLQEKLANAGSRTPDLTSKRFRGYQLDHRGD 61
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5L5P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5P9_9PHAE) HSP 1 Score: 101 bits (251), Expect = 3.280e-18 Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = -1 Query: 691 LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGDRVHVL 858
LCTHELALST PGAEAREKLT QEK A+AGIRTPDLTS RFRGYQLDHRGDR H +
Sbjct: 11 LCTHELALSTGPGAEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDRRHAV 66
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5KDG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG2_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 5.110e-18 Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = -1 Query: 703 LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGDR 858
LCTHELALST PGAEAR+KLTSQE A+AGIRTPDLTS RFRGY+LDHRGDR
Sbjct: 11 LCTHELALSTRPGAEARQKLTSQENLAYAGIRTPDLTSRRFRGYELDHRGDR 62
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5JFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW4_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.280e-17 Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = -1 Query: 700 LCTHELALSTTPGAEAREKLTSQEKFAH-AGIRTPDLTSSRFRGYQLDHRGDRV 858
LCTHELALST PGAEAREKLT QEK A AGIRTPDLTS RFRGY+LDH+GDR+
Sbjct: 11 LCTHELALSTRPGAEAREKLTLQEKLASCAGIRTPDLTSRRFRGYRLDHQGDRL 64
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5L694_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L694_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.650e-17 Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = -1 Query: 691 LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGDRVHVL 858
LCTHELALST PG EAREKLT QEK A+AGIRTPDLTS RFRGYQLDHRGDR+ +
Sbjct: 11 LCTHELALSTRPGVEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDRLSFM 66 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1091.633.1 >prot_E-siliculosus-1a_F_contig1091.633.1 ID=prot_E-siliculosus-1a_F_contig1091.633.1|Name=mRNA_E-siliculosus-1a_F_contig1091.633.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=177bp VKAKSTLAFQQLPRRSSPTAATSAARAAPEAVSRAVNALTKDLYGVGPATback to top mRNA from alignment at E-siliculosus-1a_F_contig1091:33570..36992- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1091.633.1 ID=mRNA_E-siliculosus-1a_F_contig1091.633.1|Name=mRNA_E-siliculosus-1a_F_contig1091.633.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3423bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1091:33570..36992- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1091:33570..36992- >mRNA_E-siliculosus-1a_F_contig1091.633.1 ID=mRNA_E-siliculosus-1a_F_contig1091.633.1|Name=mRNA_E-siliculosus-1a_F_contig1091.633.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1062bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1091:33570..36992- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |