mRNA_E-siliculosus-1a_F_contig1091.632.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1091.632.1 vs. uniprot
Match: D7FWE1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE1_ECTSI) HSP 1 Score: 566 bits (1460), Expect = 2.600e-199 Identity = 288/293 (98.29%), Postives = 289/293 (98.63%), Query Frame = 1 Query: 145 MGNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADGVPLEVLDNTFIEMIKASVDKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSCRNSTATSVIKGMCILAADATGGGGKQLSYTAASRKKQDPNGGVALDGSTTAVTGTDGAPAEQGGAGVGVPPGGALGGAGNVIDVDLSG 1023 MGNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADGV LEVLDNTFIEMIKASVDKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSCR+STATSVIKGMCILAADATGGGGKQLSYTAASRKKQDPNGGVA DG TTAVTGTDG PAEQGGAGVGVPPGGALGGAGNVIDVDLSG Sbjct: 1 MGNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADGVLLEVLDNTFIEMIKASVDKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSCRSSTATSVIKGMCILAADATGGGGKQLSYTAASRKKQDPNGGVAPDGFTTAVTGTDGGPAEQGGAGVGVPPGGALGGAGNVIDVDLSG 293
BLAST of mRNA_E-siliculosus-1a_F_contig1091.632.1 vs. uniprot
Match: A0A7S2Y0B4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0B4_9STRA) HSP 1 Score: 316 bits (810), Expect = 2.790e-100 Identity = 153/213 (71.83%), Postives = 173/213 (81.22%), Query Frame = 1 Query: 145 MGNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADGVPLEVLDNTFIEMIKASVDKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSCRNSTATSV 783 MG ++ GYRVLGVQ SPASKVGLVSFFDFIVA +GVPL+ LDNTFIEMIKAS D+PLPLT+YNYKS TTRDV I PS +W GQGMLGVTIRFDTY+NAD+N+VRVL+VVPGSP++IAGL+ E DY+LGTAE+ FKDPD L EEV HLDQPM YV+NT+TD VR V+LPT W GEGCLGA VG GYLHRLPQ CR ST S+ Sbjct: 1 MGGGPSIEEIESVGYRVLGVQSQSPASKVGLVSFFDFIVAVNGVPLKALDNTFIEMIKASEDRPLPLTLYNYKSETTRDVVIVPSKNWPGQGMLGVTIRFDTYYNADENVVRVLDVVPGSPANIAGLKAEQDYILGTAEKAFKDPDHLIEEVKVHLDQPMEIYVFNTETDHVRTTVILPTFKWAGEGCLGASVGSGYLHRLPQRCRGSTGISL 213
BLAST of mRNA_E-siliculosus-1a_F_contig1091.632.1 vs. uniprot
Match: A0A7S2WEH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEH5_9STRA) HSP 1 Score: 302 bits (773), Expect = 3.620e-95 Identity = 143/213 (67.14%), Postives = 169/213 (79.34%), Query Frame = 1 Query: 145 MGNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADGVPLEVLDNTFIEMIKASVDKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSCRNSTATSV 783 MG + + GYRVLGVQPNSPAS GLVSFFDF+VAA+ PL+ LDN F+EMIK S KPLPLT+YN KS TTRDV ITP +WGGQGMLGVTIRFDTY A+++LVRVL+VV SP+H+AGLQP +DYLLGTAE+VFKD + L+E V+ H+D + FYVYNT +DEVRVA+V+PTN W G+GCLG VGHGYLHRLP C+ ST TSV Sbjct: 1 MGQTMSQEEADSVGYRVLGVQPNSPASSAGLVSFFDFVVAANNYPLKELDNKFVEMIKESEGKPLPLTIYNIKSETTRDVVITPRRNWGGQGMLGVTIRFDTYWRAEESLVRVLDVVADSPAHLAGLQPSNDYLLGTAEKVFKDTETLYEAVSQHIDSIVEFYVYNTSSDEVRVAIVMPTNEWNGDGCLGISVGHGYLHRLPHQCKQSTGTSV 213
BLAST of mRNA_E-siliculosus-1a_F_contig1091.632.1 vs. uniprot
Match: A0A835YI02_9STRA (GRASP55/65 PDZ-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI02_9STRA) HSP 1 Score: 291 bits (744), Expect = 2.010e-90 Identity = 144/206 (69.90%), Postives = 167/206 (81.07%), Query Frame = 1 Query: 184 GYRVLGVQPNSPASKVGLVSFFDFIVAADGVPLEVLDNTFIEMIKASVDKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSCRNSTATSVIKGMCI 801 GYRVLGVQPNSPAS VGLVSFFDFIVAA+G+PL+ LD+T +EMIKAS +KPLP+TVYNYKS + R +TITPS +GMLGVTIRFD+Y ADD+LVRVL VV SP+HIAGL PE DYLLGTAERVFKD D L +E+ HL+Q M YVY+T+TD+VRV VVLPT WGGEGCLGAE+ HGYLHRLP CR +T SV G+ + Sbjct: 16 GYRVLGVQPNSPASAVGLVSFFDFIVAANGIPLQQLDSTLMEMIKASENKPLPITVYNYKSDSLRSITITPSRKPYYEGMLGVTIRFDSYFQADDHLVRVLSVVKNSPAHIAGLMPETDYLLGTAERVFKDTDALHDELMRHLEQTMEIYVYSTETDQVRVVVVLPTLEWGGEGCLGAEMAHGYLHRLPAQCRTTTGVSVGPGISM 221
BLAST of mRNA_E-siliculosus-1a_F_contig1091.632.1 vs. uniprot
Match: A0A7R9Y981_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y981_9STRA) HSP 1 Score: 283 bits (723), Expect = 2.010e-88 Identity = 135/206 (65.53%), Postives = 165/206 (80.10%), Query Frame = 1 Query: 142 SMGNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADGVPLEVLDNTFIEMIKASVDKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSC 759 SMGN A K G+RVLGVQ +SPAS+ L++FFDFIV+A GVPL LD TF+E+I+ VD+PLP+TVYN K + R+VTITPSS+WGG G+LGVTIRFDTY N +++LVRVLEV SP+ IAGL+ DYLLGT+ERVFK+PD+LFEEVT+H+D P+ YVYNT+TD VR V+LPTN WGG+G LGA VGHGYLHRLP+ C Sbjct: 19 SMGNGTSAEDAEKVGFRVLGVQSDSPASEAKLINFFDFIVSAAGVPLRTLDATFVELIEKHVDQPLPITVYNCKDNSQREVTITPSSTWGGIGLLGVTIRFDTYANMEESLVRVLEVARHSPAEIAGLKAGEDYLLGTSERVFKNPDVLFEEVTSHIDNPLEMYVYNTETDAVRTIVILPTNNWGGDGTLGASVGHGYLHRLPERC 224
BLAST of mRNA_E-siliculosus-1a_F_contig1091.632.1 vs. uniprot
Match: A0A7S2H0B5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0B5_9STRA) HSP 1 Score: 276 bits (705), Expect = 1.670e-85 Identity = 131/206 (63.59%), Postives = 163/206 (79.13%), Query Frame = 1 Query: 145 MGNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADGVPLEVLDNTFIEMIKASVDKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSCR 762 MGN+ ++ GYRVLGV PNSPA+ GLVSFFDF+VAA+ PL+VLDN F+++IK +KPLPLT+YN KS TTRDV ITP +WGGQGMLGVTIRFD++ A+++LVRVLEVV SP+ +AGL DYLLGTAE+VFK+ D L+ EV+ H+++ + FYVYNTK+DEVR AVV+PTN W G+G LG VGHGYLHRLP SC+ Sbjct: 1 MGNATSQEEIDSVGYRVLGVLPNSPAASAGLVSFFDFVVAANNYPLKVLDNKFVDLIKEFENKPLPLTIYNIKSDTTRDVVITPRRNWGGQGMLGVTIRFDSFWQAEESLVRVLEVVRDSPAELAGLSANDDYLLGTAEKVFKNTDTLYTEVSKHVEETIEFYVYNTKSDEVRTAVVMPTNDWKGQGSLGISVGHGYLHRLPASCK 206
BLAST of mRNA_E-siliculosus-1a_F_contig1091.632.1 vs. uniprot
Match: A0A7S3ZJU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJU3_9STRA) HSP 1 Score: 273 bits (697), Expect = 8.190e-85 Identity = 137/213 (64.32%), Postives = 154/213 (72.30%), Query Frame = 1 Query: 145 MGNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADGVPLEVLDNTFIEMIKASVDKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSCRNSTATSV 783 MG + GYRVLGVQP SPAS VGLVSFFDF+VA DGV L LD+TFI+ IK S D PLP +VYN KS TRDV+ITP+ +WGGQGMLGVTIRFDTY+ AD+ LVRVL V GSP+ AG DYLLGTAERVF D D L +E HLD + YVYN +DEVRVAVV+PT WGG+GCLGA+V HGYLHRLP CR S SV Sbjct: 1 MGQGASQEEADATGYRVLGVQPGSPASAVGLVSFFDFVVACDGVELRELDSTFIDKIKGSEDVPLPCSVYNLKSRRTRDVSITPTRNWGGQGMLGVTIRFDTYYKADECLVRVLSVADGSPAQAAGFIAGADYLLGTAERVFSDADALLDECQLHLDAAIEVYVYNVDSDEVRVAVVVPTYQWGGDGCLGADVAHGYLHRLPTRCRGSDGVSV 213
BLAST of mRNA_E-siliculosus-1a_F_contig1091.632.1 vs. uniprot
Match: A0A812RJH1_SYMMI (Gorasp2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RJH1_SYMMI) HSP 1 Score: 269 bits (687), Expect = 8.400e-84 Identity = 130/208 (62.50%), Postives = 160/208 (76.92%), Query Frame = 1 Query: 145 MGNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADGVPLEVLDNTFIEMIKASVDKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSCRNS 768 MGNS + GYRVLGVQPNSPAS GLVSFFDFIVAA+ VPL LD TFI++IKAS D LPLTVYN+KS TTR V +TPS +W G+GMLG+TIRFDTYHNADD + RVL+V SP+ +AGLQ DY+LGT+E+VF+D D LF+E+ H+++P+ FYVYN+ TDEVR V++P+N WGGEG LG V G+LHR+P R+S Sbjct: 1 MGNSSSKEEQDSVGYRVLGVQPNSPASNCGLVSFFDFIVAANEVPLRTLDTTFIDLIKASEDVILPLTVYNWKSNTTRQVALTPSRNWPGEGMLGITIRFDTYHNADDYVYRVLDVEVNSPAELAGLQANSDYILGTSEKVFRDVDSLFDELKQHVNKPLEFYVYNSDTDEVRNVVIMPSNDWGGEGILGGAVACGFLHRIPSDNRDS 208
BLAST of mRNA_E-siliculosus-1a_F_contig1091.632.1 vs. uniprot
Match: F0YJB4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJB4_AURAN) HSP 1 Score: 265 bits (677), Expect = 1.800e-82 Identity = 137/204 (67.16%), Postives = 152/204 (74.51%), Query Frame = 1 Query: 184 GYRVLGVQPNSPASKVGLVSFFDFIVAADGVPLEVLDNTFIEMIKASV---------------DKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLP 750 GYRVLGVQPNSPAS VGLVSFFDF+VA DGV L LD+TFI+ IKA+ D+PLP VYN KS TR VTITP+ +WGGQGMLGVTIRFDTYH AD++LVRVLEV PGSP+ IAGL+ DYLLGTAERV D E T HLD+P+ FYVYNT+TDEVRV V+LPT WGG GCLGA V HGYLHRLP Sbjct: 2 GYRVLGVQPNSPASDVGLVSFFDFVVAVDGVELRELDSTFIDKIKAARPRRLRSFAPRDAPTRDRPLPCVVYNLKSRQTRSVTITPTRNWGGQGMLGVTIRFDTYHKADEHLVRVLEVAPGSPAEIAGLRAGTDYLLGTAERVLND------ECTLHLDKPVEFYVYNTETDEVRVVVLLPTYSWGGGGCLGAAVAHGYLHRLP 199
BLAST of mRNA_E-siliculosus-1a_F_contig1091.632.1 vs. uniprot
Match: W7U145_9STRA (Golgi reassembly-stacking protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U145_9STRA) HSP 1 Score: 265 bits (676), Expect = 7.890e-81 Identity = 133/224 (59.38%), Postives = 161/224 (71.88%), Query Frame = 1 Query: 148 GNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADGVPLEVLDNTFIEMIKASVDKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSCRNSTATSVIKGMCILAADAT 819 G G L CGYRVLGVQ SPA+ GLVSFFDFIV A+ +PL +D TFI++I+ D+PL L +YN KS T RD+ +TPS +W GQGMLGVTIRFD Y ++++LVRVLEVVP SP+ +AGLQP D+LLGTAE VFKDPD+L E + +L+Q + FYVYNT+TD VR A ++P WGG GCLGAE+GHGYLH LPQ S TSV K ADAT Sbjct: 15 GEFAGDEGLQNCGYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLIREFEDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGRGCLGAEIGHGYLHGLPQKSCRSNGTSVFKVPAPHIADAT 238 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1091.632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1091.632.1 >prot_E-siliculosus-1a_F_contig1091.632.1 ID=prot_E-siliculosus-1a_F_contig1091.632.1|Name=mRNA_E-siliculosus-1a_F_contig1091.632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=294bp MGNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADGVPLEVLDback to top mRNA from alignment at E-siliculosus-1a_F_contig1091:26930..33228+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1091.632.1 ID=mRNA_E-siliculosus-1a_F_contig1091.632.1|Name=mRNA_E-siliculosus-1a_F_contig1091.632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6299bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1091:26930..33228+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1091:26930..33228+ >mRNA_E-siliculosus-1a_F_contig1091.632.1 ID=mRNA_E-siliculosus-1a_F_contig1091.632.1|Name=mRNA_E-siliculosus-1a_F_contig1091.632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1764bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1091:26930..33228+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |