mRNA_E-siliculosus-1a_F_contig1091.631.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1091.631.1 vs. uniprot
Match: D7FWE2_ECTSI (WD40 repeat protein flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE2_ECTSI) HSP 1 Score: 545 bits (1404), Expect = 1.230e-181 Identity = 324/328 (98.78%), Postives = 325/328 (99.09%), Query Frame = 1 Query: 1 MFIYLSKKIAIPNGTKLDSLAWNPAQGWIACGGSNGLTKVLKLDSVGGGGAGGAPGKEVNAESGRGXXXXXXXXXXSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAMTLPEGAEITPDSTGANSPTSGSKKKPAFLRDEKDDXXXXXXXXXAKGGEGKNGGRKRGEGKKGRVIFVDWYDGAEGLLHPQVPTLCIALDGGFVQLSRGVDDNAAPLVVDAHMRIRQA 984 MFIYLSKKIAIPNGTKLDSLAWNPAQGWIACGGSNGLTKVLKLDSVGGGGAGGAPGKEVNAE+GRGXXXXXXXXXXSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAMTLPEGAEITPDSTGANSPTSGSKKKPAFLRDEKD XXXXXXX AKGGEGKNGGRKRGEGKKGRVIFVDWYDGAEGLLHPQVPTLCIALDGGFVQLSRGVDDNAAPLVVDAHMRIRQA Sbjct: 1 MFIYLSKKIAIPNGTKLDSLAWNPAQGWIACGGSNGLTKVLKLDSVGGGGAGGAPGKEVNAENGRGXXXXXXXXXXSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAMTLPEGAEITPDSTGANSPTSGSKKKPAFLRDEKDXXXXXXXXNEAKGGEGKNGGRKRGEGKKGRVIFVDWYDGAEGLLHPQVPTLCIALDGGFVQLSRGVDDNAAPLVVDAHMRIRQA 328
BLAST of mRNA_E-siliculosus-1a_F_contig1091.631.1 vs. uniprot
Match: A0A6H5L041_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L041_9PHAE) HSP 1 Score: 374 bits (961), Expect = 1.250e-116 Identity = 202/254 (79.53%), Postives = 203/254 (79.92%), Query Frame = 1 Query: 277 VCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------RAMTLPEGAEITPDSTGANSPTSGSKKKPAFLRDEKDDXXXXXXXXXAKGGEGKNGGRKRGEGKKGRVIFVDWYDGAEGLLHPQVPTLCIALDGGFVQLSRGVDDNAAPLVVDAHMRIRQA 984 VCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTS+GQKICIIYADGAVIVGSVDGNRLWGKELDMGLQN RAMTLPEGAEITPDSTGANSPTSGSKKKPAFLRDEKD XXXXXXXX KGGEGK GGRKRGEGKKGRVIFVDWYDGAEGLLHPQVPTLCIALDGGFVQLSRGVDDNAAPLVVDAHMRIRQA Sbjct: 15 VCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSDGQKICIIYADGAVIVGSVDGNRLWGKELDMGLQNVEWSPDGRRKAILIYVQPTLHLTTYTRILFVTAVGEVLIYDAQGKRLRAMTLPEGAEITPDSTGANSPTSGSKKKPAFLRDEKDXXXXXXXXXEVKGGEGKTGGRKRGEGKKGRVIFVDWYDGAEGLLHPQVPTLCIALDGGFVQLSRGVDDNAAPLVVDAHMRIRQA 268
BLAST of mRNA_E-siliculosus-1a_F_contig1091.631.1 vs. uniprot
Match: A0A835YIA3_9STRA (WD40 repeat protein flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIA3_9STRA) HSP 1 Score: 288 bits (738), Expect = 4.240e-85 Identity = 187/330 (56.67%), Postives = 219/330 (66.36%), Query Frame = 1 Query: 1 MFIYLSKKIAIPNGTKLDSLAWNPAQGWIACGGSNGLTKVLKLDSVGGGGAGGAPGKEVNAESGRGXXXXXXXXXXSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAMTLPEGAEITPDSTGANSPTSGSKKKPAFLRDEKDDXXXXXXXXXAKGGEGKNGGRKRGEGKKGRVIF--VDWYDGAEGLLHPQVPTLCIALDGGFVQLSRGVDDNAAPLVVDAHMRIRQA 984 MFI+LSKKIAIP G KL SLAWNP QGWIACGG +GL KVLKL+S A G++ ++G S+LSMNQTLEGH GSV+CVTWN+ YSKLTT DE GLIIVWMLHKG+W+EEMINNR KS VRDMKWTS+GQKICI+Y DGAVIVGSVDGNRLWGKELD+ LQ+ XXXXXXXXXXXXXXXXX + M LP + + P+ GS ++ D+ XXXX +G NG + G G + +DWYDGAEG +H PTL IA G VQ+ R DD A+P+VVDA MR+R A Sbjct: 1 MFIFLSKKIAIPKGIKLHSLAWNPDQGWIACGGESGLMKVLKLES--------ATGQKDPQKAG------------SDLSMNQTLEGHNGSVMCVTWNSNYSKLTTSDENGLIIVWMLHKGMWYEEMINNRGKSVVRDMKWTSDGQKICIVYEDGAVIVGSVDGNRLWGKELDIYLQHVEXXXXXXXXXXXXXXXXXHIYDAAGAKVKLMQLPAATL----AAASKPPSDGSARESKHAGDD--------XXXXDEGYARHNGTSRGGNGASSPALIADIDWYDGAEGYVHQAAPTLAIAFVNGTVQIGRHTDD-ASPVVVDAGMRVRLA 297
BLAST of mRNA_E-siliculosus-1a_F_contig1091.631.1 vs. uniprot
Match: A0A7S0WI31_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WI31_9CHLO) HSP 1 Score: 238 bits (606), Expect = 7.460e-75 Identity = 119/176 (67.61%), Postives = 132/176 (75.00%), Query Frame = 1 Query: 1 MFIYLSKKIAIPNGTKLDSLAWNPAQGWIACGGSNGLTKVLKLDSVGGGGAGGAPGKEVNAESGRGXXXXXXXXXXSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGL 528 MFIYLSKKIAIPNG +L ++WN QGWIACGG NGL KVLKL+S P K+ A+ G SNLSMNQTLEGH GSV+ V WN Y KLTT D+ GLIIVWMLHKG+WFEEMINNR+KS VRDMKWTS+GQKICI+Y DGAVIVGSVDGNRLWGKEL + L Sbjct: 1 MFIYLSKKIAIPNGVRLKCVSWNSEQGWIACGGDNGLLKVLKLESA-------TPTKDAKAKGG---------PAASNLSMNQTLEGHNGSVMVVNWNENYRKLTTSDQYGLIIVWMLHKGMWFEEMINNRNKSVVRDMKWTSDGQKICIVYEDGAVIVGSVDGNRLWGKELALSL 160
BLAST of mRNA_E-siliculosus-1a_F_contig1091.631.1 vs. uniprot
Match: A0A7S0LYC8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LYC8_9CRYP) HSP 1 Score: 235 bits (600), Expect = 1.140e-72 Identity = 144/330 (43.64%), Postives = 165/330 (50.00%), Query Frame = 1 Query: 1 MFIYLSKKIAIPNGTKLDSLAWNPAQGWIACGGSNGLTKVLKLDSVGGGGAGGAPGKEVNAESGRGXXXXXXXXXXSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAMTLPEGAEITPDSTGANSPTSGSKKKPAFLRDEKDDXXXXXXXXXAKGGEGKNGGRKRGEGKKGRVIFVDWYDGAEGLLHPQVPTLCIALDGGFVQLSRGVDDNAAPLVVDAHMRIRQASA 990 MFIYL+KKIAIPNG L WN QGWIACGG GL KVLKL+S G GKE SNL+MNQTLEGH V+C WN + KLTT DE GLIIVWMLHKGLWFEEMINNR+KS VRDMKW ++GQKICI+Y DGAVIVGSVDGNRLWGK+L M LQ P+G D G + + P F D V + WY+G EGL+ P PTL IA D G VQL D P+++D +R + A Sbjct: 2 MFIYLNKKIAIPNGVVLRCCYWNADQGWIACGGEGGLLKVLKLESAG-------KGKERGIAG------------TSNLTMNQTLEGHSEPVICAAWNEAFKKLTTSDESGLIIVWMLHKGLWFEEMINNRNKSVVRDMKWNADGQKICIVYEDGAVIVGSVDGNRLWGKDLKMQLQYVEWSPDGKLIL--------------------FVTPQGVVHVYDGLG-----NFVSQAPLFSDDS-----------------------------TATVAGLCWYNGLEGLVDPNAPTLAIAFDNGRVQLMTSETDEK-PVLIDTGLRPSEEKA 257
BLAST of mRNA_E-siliculosus-1a_F_contig1091.631.1 vs. uniprot
Match: A0A2J7ZHB6_9CHLO (WD repeat domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZHB6_9CHLO) HSP 1 Score: 231 bits (590), Expect = 2.540e-72 Identity = 118/176 (67.05%), Postives = 130/176 (73.86%), Query Frame = 1 Query: 1 MFIYLSKKIAIPNGTKLDSLAWNPAQGWIACGGSNGLTKVLKLDSVGGGGAGGAPGKEVNAESGRGXXXXXXXXXXSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGL 528 MFIYLSKKIAIPN KL ++WN QGWIACGG +GL KVL+LD G KEV + G NLS+NQTLEGH G+VVCV WN + KLTT DE GLIIVWMLHKG+WFEEMINNR+KS V+DMKWTSNG+KICIIY DGAVIVGSVDGNRLWGKEL M L Sbjct: 1 MFIYLSKKIAIPNNVKLRCISWNTDQGWIACGGESGLLKVLRLD--------GTTSKEVKGKKEGGAAG-------GNLSLNQTLEGHNGAVVCVCWNNAFQKLTTSDEFGLIIVWMLHKGMWFEEMINNRNKSVVKDMKWTSNGEKICIIYEDGAVIVGSVDGNRLWGKELGMEL 161
BLAST of mRNA_E-siliculosus-1a_F_contig1091.631.1 vs. uniprot
Match: A0A7S0HEY4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HEY4_9EUKA) HSP 1 Score: 232 bits (592), Expect = 3.170e-72 Identity = 118/176 (67.05%), Postives = 127/176 (72.16%), Query Frame = 1 Query: 1 MFIYLSKKIAIPNGTKLDSLAWNPAQGWIACGGSNGLTKVLKLDSVGGGGAGGAPGKEVNAESGRGXXXXXXXXXXSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGL 528 MF+YLSKKIAIPNG KL SL WN GWI CGG NGL KVLKLDS G+ + G SNLSMNQTLEGH GSV+CV WN Y KLTT D+ GLIIVWMLHKG+WFEEMINNR+KS VR MKWT +GQ+ICIIY DGAVIVGSVDGNRLWGKEL M L Sbjct: 12 MFVYLSKKIAIPNGVKLKSLNWNTVNGWIVCGGENGLLKVLKLDS----------GRTTDKSKGM--------AAPSNLSMNQTLEGHNGSVMCVCWNENYRKLTTSDQYGLIIVWMLHKGMWFEEMINNRNKSTVRGMKWTPDGQRICIIYEDGAVIVGSVDGNRLWGKELKMQL 169
BLAST of mRNA_E-siliculosus-1a_F_contig1091.631.1 vs. uniprot
Match: A0A7S2BR82_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BR82_9STRA) HSP 1 Score: 229 bits (585), Expect = 3.360e-72 Identity = 117/171 (68.42%), Postives = 130/171 (76.02%), Query Frame = 1 Query: 16 SKKIAIPNGTKLDSLAWNPAQGWIACGGSNGLTKVLKLDSVGGGGAGGAPGKEVNAESGRGXXXXXXXXXXSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGL 528 SKKIAIPNG L SLAWNP QGWIACGG +GL KVLKL+ G + A++G SNLSMNQTL+GH G VVCVTWNA Y KLTT DE GLIIVWMLHKG+WFEEMINNR+KS V+DMKWT++G KICI+YADGAVIVGSVDGNRLWGKEL+M L Sbjct: 1 SKKIAIPNGINLYSLAWNPDQGWIACGGDSGLLKVLKLELTTRAG-------DQKAKTG--------VAAPSNLSMNQTLDGHHGKVVCVTWNALYRKLTTSDESGLIIVWMLHKGMWFEEMINNRNKSVVKDMKWTADGSKICIVYADGAVIVGSVDGNRLWGKELEMQL 156
BLAST of mRNA_E-siliculosus-1a_F_contig1091.631.1 vs. uniprot
Match: A0A813B5A4_9DINO (WDR35 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B5A4_9DINO) HSP 1 Score: 231 bits (588), Expect = 4.280e-71 Identity = 118/176 (67.05%), Postives = 128/176 (72.73%), Query Frame = 1 Query: 1 MFIYLSKKIAIPNGTKLDSLAWNPAQGWIACGGSNGLTKVLKLDSVGGGGAGGAPGKEVNAESGRGXXXXXXXXXXSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGL 528 MFIYLSKKIAIPN T+L SL+WNP GWIACGG NGL KVLKLD V K+ + SNLSMNQTLEGH G V+ VTWNA + KLTT D+ GLIIVWMLHKG WFEEMINNR+KS VRDMKWTS+G KICIIY DGAVIVGSVDGNR+WGKEL L Sbjct: 1 MFIYLSKKIAIPNQTRLRSLSWNPEHGWIACGGDNGLLKVLKLDQVS---------KDAKTKG---------VAAPSNLSMNQTLEGHNGGVMVVTWNAQHKKLTTSDQYGLIIVWMLHKGTWFEEMINNRNKSVVRDMKWTSDGLKICIIYEDGAVIVGSVDGNRVWGKELKTNL 158
BLAST of mRNA_E-siliculosus-1a_F_contig1091.631.1 vs. uniprot
Match: A0A397CPU1_9STRA (ANAPC4_WD40 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CPU1_9STRA) HSP 1 Score: 243 bits (620), Expect = 1.930e-70 Identity = 168/318 (52.83%), Postives = 197/318 (61.95%), Query Frame = 1 Query: 1 MFIYLSKKIAIPNGTKLDSLAWNPAQGWIACGGSNGLTKVLKLDSVGGGGAGGAPGKEVNAESGRGXXXXXXXXXXSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAMTLPEGAEITPDSTGANSPTSGSKKKPAFLRDEKDDXXXXXXXXXAKGGEGKNGGRKRGEGKKGRVIFVDWYDGAEGLLHPQVPTLCIALDGGFVQLSRGVDDNAAPLV 954 MFI+LSKKIAIPNG +L +WNP QGWI+CGG NGL KVLKL+S AP K+ G SNL+MNQ+L+GH GSVVC TWNA Y KLTT DE GLIIVWM+H+G+W+EEMINNR+KS V+DMKW+S+GQKICI Y DGAVIVGSVDGNRLWGKE+ + L XXXXXXXXXXXXXXXXXXXXXXXXXX MTL + DEKD KK ++I + WYDG EG + PTL IA G VQ++RG D++A L+ Sbjct: 1 MFIFLSKKIAIPNGAQLCCSSWNPEQGWISCGGQNGLLKVLKLES--------APTKDGKGPRG--------IAAQSNLTMNQSLDGHAGSVVCATWNANYKKLTTSDENGLIIVWMMHRGMWYEEMINNRNKSVVKDMKWSSDGQKICIAYEDGAVIVGSVDGNRLWGKEMKVELCFVEXXXXXXXXXXXXXXXXXXXXXXXXXXLSNMTL-------------------------YAVDEKD--------------------------KKYKIIGLHWYDGCEGHVSEDAPTLAIAFADGKVQITRGRYDDSAVLI 251 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1091.631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1091.631.1 >prot_E-siliculosus-1a_F_contig1091.631.1 ID=prot_E-siliculosus-1a_F_contig1091.631.1|Name=mRNA_E-siliculosus-1a_F_contig1091.631.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=331bp MFIYLSKKIAIPNGTKLDSLAWNPAQGWIACGGSNGLTKVLKLDSVGGGGback to top mRNA from alignment at E-siliculosus-1a_F_contig1091:23660..26504- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1091.631.1 ID=mRNA_E-siliculosus-1a_F_contig1091.631.1|Name=mRNA_E-siliculosus-1a_F_contig1091.631.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2845bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1091:23660..26504- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1091:23660..26504- >mRNA_E-siliculosus-1a_F_contig1091.631.1 ID=mRNA_E-siliculosus-1a_F_contig1091.631.1|Name=mRNA_E-siliculosus-1a_F_contig1091.631.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1986bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1091:23660..26504- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |