mRNA_E-siliculosus-1a_F_contig109.619.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: D7FKV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKV4_ECTSI) HSP 1 Score: 376 bits (966), Expect = 2.650e-124 Identity = 177/184 (96.20%), Postives = 181/184 (98.37%), Query Frame = 3 Query: 321 MSSSPFSLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELLVPDAEGRVPPRAPRPRTPPFPDGFRDG 872
M SSPFSLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLL++FLPGGDMKA VDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELL+PDAEGR+PPR PRPRTPPFPDGFRDG
Sbjct: 1 MPSSPFSLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLLEFLPGGDMKAVVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELLIPDAEGRLPPRTPRPRTPPFPDGFRDG 184
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: A0A835Z9I2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9I2_9STRA) HSP 1 Score: 150 bits (379), Expect = 1.210e-37 Identity = 79/150 (52.67%), Postives = 99/150 (66.00%), Query Frame = 3 Query: 342 LAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDM-KADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSR-KGLVTVRQRRWLVREESRILGVFGTE 785
L +R+++ DIGREKGTWMP WG SG R+ VD+LV+F P G + + SPFV V WSV A+G GSL T RF ++T G RGDV+IPAG IY +VPAWG +LSR +G+VTVRQ+RW +REESRILGVF +
Sbjct: 97 LVGTRYVLSFDIGREKGTWMPPQWGASGARLNVDVLVEFGPSGTFAEVALKSPFVATDVAGIAWSVEGARG---------TGSLQQSTLRFSLQTSGAARGDVSIPAGPIYCSVPAWGARLSRSRGMVTVRQKRWGIREESRILGVFSAQ 237
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: A0A7R9Z757_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z757_9CHLO) HSP 1 Score: 116 bits (291), Expect = 1.880e-26 Identity = 60/140 (42.86%), Postives = 83/140 (59.29%), Query Frame = 3 Query: 354 RWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSR-KGLVTVRQRRWLVREESRILG 770
R+ +++DIGREK TWM Q W SGRR+EV ++ +F GG + F + V+ G W +G DT R ++T GF RGDV++ G ++ AVP WGG LSR KG +TV+Q RWLVR+ESR++G
Sbjct: 11 RYQLVLDIGREKHTWMDQQWAASGRRMEVPIVAEFGRGGVLNVLGVGAFSPLQVSGGSWHIGG------------------DTLRLVLQTGGFARGDVSLAPGPLHVAVPCWGGLLSRDKGTLTVQQTRWLVRKESRLVG 132
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: A0A7S3YGE1_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YGE1_9EUKA) HSP 1 Score: 119 bits (299), Expect = 2.840e-26 Identity = 67/180 (37.22%), Postives = 94/180 (52.22%), Query Frame = 3 Query: 342 LAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWG---GKLSRKGLVTVRQRRWLVREESRILGVFGTELLVPDAEGRVPPRAPRPRTPPFPDGFRDG 872
+A SR +++DIGREK TWMP W SGRR+E+ +L +F GD+ A + P++DM V G+W V D RFW+E DGF R DV++P G+++FA WG G S ++T+ +R+ VR+E R++G F VP P P PP FR G
Sbjct: 121 IAGSRRRLVLDIGREKNTWMPPQWAASGRRMEIHMLAEFHENGDVSARI-GPYLDMGVHKGRWVVSE-----------------DDVLRFWLEIDGFERFDVSLPKGKLFFACNLWGLLLGNKSTNNILTIVAKRFFVRKEKRMVGTFQAF--------DVPEDDPDPTLPPCRTKFRGG 274
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: A0A7S0GY79_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GY79_9EUKA) HSP 1 Score: 114 bits (286), Expect = 1.020e-25 Identity = 59/147 (40.14%), Postives = 89/147 (60.54%), Query Frame = 3 Query: 339 SLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLS-RKGLVTVRQRRWLVREESRILGVF 776
SL R+ +++D+GREK TWMP W SGRR+E+ +LV FL G ++A + P++DM++ G WS G P N L +F + GF R DV++P G +YF+ +WGG +S R ++T+R R+LVR+E R++G F
Sbjct: 6 SLVGMRYRLILDVGREKNTWMPPQWAASGRRMEIHMLVNFLQDGQLEARM-GPYLDMSLKGGTWSKG---------PNNRL--------KFNIAIGGFERFDVSLPEGLLYFSSSSWGGLISERNNIITIRATRFLVRKEWRMVGTF 134
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: A0A7S2X7L6_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X7L6_9EUKA) HSP 1 Score: 107 bits (267), Expect = 6.400e-22 Identity = 53/146 (36.30%), Postives = 81/146 (55.48%), Query Frame = 3 Query: 351 SRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWG----GKLSRKGLVTVRQRRWLVREESRILGVF 776
SR +++DIGREK TWMP W SGRR+E+ +L F G + A + ++DM + G+W + D +FW+E DGF R DV++P G++YFA WG + ++ +T++ RR+ VREE+R +G F
Sbjct: 143 SRRRLVLDIGREKNTWMPPQWAASGRRMEIHMLATFQENGHVSARIGL-YLDMGIHGGEWHI------------------EGDALKFWLEIDGFERFDVSLPKGKLYFACNLWGVVLGNQANKNNRLTIQARRFFVREETRTVGTF 269
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: C1FF14_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FF14_MICCC) HSP 1 Score: 106 bits (265), Expect = 6.200e-21 Identity = 56/151 (37.09%), Postives = 80/151 (52.98%), Query Frame = 3 Query: 342 LAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELLV 794
LA +RW + +DIGRE+GTWMP WG SG RV + + V+ G + F MTV+ GKW L D +F V+T G +GDVT+P ++F AWGG ++ +G + + Q R+ R E R++GVF E L+
Sbjct: 239 LAGTRWRLTLDIGRERGTWMPPEWGASGFRVILPMAVELGANGVVTPIAIGGFAPMTVSAGKWR------------------LEGDALKFDVKTSGMAKGDVTLPEDSLHFRTAAWGGTMASRGNLMLLQTRFGFRREWRMVGVFKAEPLL 371
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: C1MGG1_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MGG1_MICPC) HSP 1 Score: 104 bits (260), Expect = 8.150e-21 Identity = 56/159 (35.22%), Postives = 83/159 (52.20%), Query Frame = 3 Query: 339 SLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWV-ETDGFGRGDVTIPAGR-IYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELLVPDAEG 809
+L +RW + +D+GRE+GTWMP SW SG RV + ++ GG + F+ M ++ G+W L D +F V T G +GDVT+PA ++F AWGG +S +G + +RQ RW R+E R++GVF E L +G
Sbjct: 161 ALIGTRWRLTLDVGRERGTWMPPSWAASGVRVIAPIAIELAEGGVTRVVATGAFLPMKLSEGRWR------------------LEGDALKFDVLMTTGMEKGDVTLPANESLHFRASAWGGAVSSRGTLLLRQTRWGFRKEWRMVGVFKAEKLSDGEDG 301
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: A0A7S0NI69_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI69_MICPS) HSP 1 Score: 104 bits (259), Expect = 4.570e-20 Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 3 Query: 339 SLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELLV 794
+L +RW + +DIGRE+GTWMP WG SG RV + + V+ G + F MTV+ GKW L D +F V+T G +GDVT+P ++F AWGG ++ +G + + Q R+ R E R++GVF E L+
Sbjct: 274 ALVGTRWRLTLDIGRERGTWMPPEWGASGFRVILPVAVELGANGVVTPLAVGGFAPMTVSVGKWR------------------LEGDALKFDVKTSGMAKGDVTLPEDSLHFRTAAWGGTMASRGNLMLLQTRFGFRREWRMVGVFKAEPLL 407
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: R1D3K6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D3K6_EMIHU) HSP 1 Score: 95.9 bits (237), Expect = 7.690e-19 Identity = 46/131 (35.11%), Postives = 72/131 (54.96%), Query Frame = 3 Query: 342 LAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVT---PGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTV 725
L+ +RW + +D+G E+GTWMP +WGRSG R + V+F G+++ P+ +TV+ G+W+ A + K FW+ G R DV + AGR++F+ PAWG +LSR+G T+
Sbjct: 45 LSGTRWTLSLDVGAERGTWMPPTWGRSGARATPRVRVEFAEDGELRILETGPYDRVTVSWAGAGRWTQPAGREK----------------AEFWLPHTGLARDDVVLEAGRLHFSAPAWGAQLSRRGGTTI 159 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig109.619.1 >prot_E-siliculosus-1a_F_contig109.619.1 ID=prot_E-siliculosus-1a_F_contig109.619.1|Name=mRNA_E-siliculosus-1a_F_contig109.619.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=185bp MSSSPFSLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGback to top mRNA from alignment at E-siliculosus-1a_F_contig109:52385..56083+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig109.619.1 ID=mRNA_E-siliculosus-1a_F_contig109.619.1|Name=mRNA_E-siliculosus-1a_F_contig109.619.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3699bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:52385..56083+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig109:52385..56083+ >mRNA_E-siliculosus-1a_F_contig109.619.1 ID=mRNA_E-siliculosus-1a_F_contig109.619.1|Name=mRNA_E-siliculosus-1a_F_contig109.619.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1110bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:52385..56083+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |