mRNA_E-siliculosus-1a_F_contig109.618.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: D7FKV3_ECTSI (GOLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKV3_ECTSI) HSP 1 Score: 467 bits (1202), Expect = 2.810e-163 Identity = 242/252 (96.03%), Postives = 247/252 (98.02%), Query Frame = 3 Query: 54 MNALSAHVLLFLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGTLLKQWA 809 MNALSAHVL+FLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGN+VHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDT LQDAGGSPKNKEDLAIIT EMD LSKVFEEIKSFQ+LERMQLTQR TAAEDN+ASMVQSSVLET+VLLLVGIGQIIFVRKWFSGKGTLLKQWA Sbjct: 1 MNALSAHVLVFLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNVVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTTDLQDAGGSPKNKEDLAIITKEMDGLSKVFEEIKSFQELERMQLTQRKTAAEDNNASMVQSSVLETIVLLLVGIGQIIFVRKWFSGKGTLLKQWA 252
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: F0Y4F3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4F3_AURAN) HSP 1 Score: 76.3 bits (186), Expect = 4.650e-11 Identity = 62/224 (27.68%), Postives = 100/224 (44.64%), Query Frame = 3 Query: 150 CFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEK-----GEYEICLSNDKSYAQEAKHVMLDISEV---VEDGATKKHAKDDTMALQDAGGSP-KNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGTL 794 C + +E +VFV GGNLD+ ++ GP + + + + +K S +++E A + + + A+ G Y ICL N S E K V L +++ DG + ++A P KN E + I + L +K Q ER +L + + H +MV+ S+ ETVV ++ I QI+FVR+WFSGKG + Sbjct: 2139 CVYEELEARQSASLEVFVLSGGNLDVSVAIDGPFPVVEESGLPRSAHRRGESGLSKPHSAHLVESKQSGAAFAAPHVIEIAADAAVGGGGIYRICLDNAASRISE-KLVTLSVTKAGGAAGDG-------EPVRKKREAEAKPGKNSESIEKIEKRVVSLRSQIAVLKDKQTRERRRLAHHKSLYDAKHNTMVEGSLFETVVYIVCSIFQIVFVRRWFSGKGII 2354
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: A0A7S2C741_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C741_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 5.230e-11 Identity = 53/222 (23.87%), Postives = 101/222 (45.50%), Query Frame = 3 Query: 150 CFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKD--DTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGTLLKQWA 809 C + E + ++FV GG L + V+GP ++ G+ + IT + + N + + + F + G Y +C++ND + K V +D+ + V K KD ++ +D + K E++ + + L K +++ Q+ +R + +D++ MV S++ET++ + Q+IFVRKWF+GKG + WA Sbjct: 48 CIIEDIPESHQGTLEIFVESGGKLSVHVVVQGP--------LIPGKNGIPEPSPKTITLLDDIVTNGREEDFDDSFFFSFPSRGGSYRVCIANDMNRIA-TKMVQVDLRKSVASQNDKIEDKDAIESSGSKDGKATSKEPEEVLALEKRIKRLKKSLHKVQRQQEQDRHRQAVHTAVNQDSNNHMVVGSLIETLIFMGTASFQVIFVRKWFAGKGP--QNWA 258
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: F0ZNA0_DICPU (Emp24/gp25L/p24 family protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZNA0_DICPU) HSP 1 Score: 68.6 bits (166), Expect = 9.050e-10 Identity = 65/247 (26.32%), Postives = 104/247 (42.11%), Query Frame = 3 Query: 54 MNALSAHVLLFLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDA-EKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGT 791 MN L A +L + + +++A T IE ++Q CFF YVE V +GG LDI + P RGN + R + K Y F A E G Y++C +N+ S AK V E+ A K AK D++ D + ++ +V + + Q+ R + +E +A +V ++ E VVL+++ IGQI ++RKWF + + Sbjct: 1 MNKLVAIFILACIYLIGSSSALTLQIEPKSQECFFNYVEHGKNSLILYQVIRGGLLDINVKITDP-----RGNSIFERLHFDNQMKGK---------------------YSFTAGESGAYKVCFNNEMSRFT-AKVVTFSWDS--EENAEKDAAKGDSITPMDQS---------------VQKIERVLQSVIYEQKKLRFREQSNRDTSESTNARVVWWTIAEVVVLVVMAIGQIWYLRKWFETRSS 203
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: A0A8J2WN94_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WN94_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 2.450e-9 Identity = 67/223 (30.04%), Postives = 106/223 (47.53%), Query Frame = 3 Query: 150 CFFRYVEEETKLQAKVFVFKGGN-LDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKIT--SENILEDNDDS---AELFSGYDYKFDAEKGEYEICLSNDKS-YAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGTLL 797 C + + E +VFV GG +DI +V GP ++D+ V G + +A++T S + ED S L + D G Y ICL N S Y ++ + + SE + A K H KD + GG +N E++ + + L +K Q ER +L + + H MVQ+S++ET V +L + Q++FVR+WF+GKG +L Sbjct: 39 CIYEELPEGVGGTLEVFVLSGGGEMDIDVAVDGPLKIDE----VSGLPAKNGKPAARVTVKSGGVNEDRFASPTHVALAAPRDGP-----GAYSICLDNSGSRYTEKVVSLAVRTSEDKGNAAVK-HKKD-----KKKGG--RNSENVEKVEARVVALRGQLATLKDKQARERRRLAKHRALYDARHDGMVQASLMETCVYVLCSVFQLVFVRRWFAGKGGML 244
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: TMEDB_DICDI (Transmembrane emp24 domain-containing protein B n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=TMEDB_DICDI) HSP 1 Score: 61.6 bits (148), Expect = 2.280e-7 Identity = 57/245 (23.27%), Postives = 104/245 (42.45%), Query Frame = 3 Query: 57 NALSAHVLLFLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGT 791 N L +L L + +++A T +E ++Q CF+ ++E V +GG LDI + P +GN + R + K + F+ E G Y++C +N+ S AK V + E+ K+ AK D++ D + ++ +V + + Q+ R + +E +A +V ++ E +VL+++G+GQI ++RKWF K T Sbjct: 5 NQLINICILVTLFLIGSSSALTLQVEPKSQECFYNFIESGKTSLLLYQVIRGGLLDINVKLTDP-----KGNTIFERLHFDTQMKGK--------------QSFTA------GESGAYKVCFNNEMSRFT-AKVVTFTWAS--EEEGVKEVAKGDSITPMDQS---------------VQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIAEVIVLVVMGVGQIWYLRKWFDNKST 206
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: A0A8J4Q2E2_9MYCE (GOLD domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q2E2_9MYCE) HSP 1 Score: 60.8 bits (146), Expect = 4.050e-7 Identity = 59/235 (25.11%), Postives = 97/235 (41.28%), Query Frame = 3 Query: 99 VSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIV----HGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGT 791 + T A T IE ++Q CFF ++E E V +GG LDI + D RGN + H T +K R+S AE G Y++C +N+ S AK ++ S VED AK D++ D + ++ + + I Q+ R + +E + +V S+ E VVL+++G+ QI ++R+WF + + Sbjct: 17 ICTTDALTLQIEPKSQECFFNFIEREKTTLILYQVTRGGLLDIDVRI-----FDPRGNTIFSKLHFDTTMKGRQSFVA------------------------AESGAYKLCFNNEMSRFT-AK--VVSFSWTVEDSNNNDIAKGDSLTPMDQS---------------IQKIERTLQSIIHEQKRLRYREQANRDTSESTNGRVVWWSIAEVVVLVVMGVAQIWYLRRWFDSRSS 204
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: D3BM15_POLPP (Emp24/gp25L/p24 family protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BM15_POLPP) HSP 1 Score: 60.1 bits (144), Expect = 7.210e-7 Identity = 59/245 (24.08%), Postives = 104/245 (42.45%), Query Frame = 3 Query: 75 VLLFLLCCVSATA--ASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGR----TKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGT 791 +LL ++ C++ A T IE + Q CF+ YVE V +GG LDI + P +GN + R T +K R+S A G Y++C +N+ S AK V T + +DA S + L+ + + ++ +V + I Q+ R + +E+ +A +V+ ++++ +VL+ +G+GQI ++R+WF K T Sbjct: 6 LLLAVVLCLAVVNVNALTMQIEPKTQECFYEYVENGKTSIILYQVIRGGLLDIDVRIYDP-----QGNTIFSRLHFDTTMKGRQSFTA------------------------ATSGAYKLCFNNEMSRFT-AKVVTF------------------TWSFEDADNSFVKGDALSPMEQSVQKIERVLQSIVMEQKRMRFREQTNRDTSENTNARVVRWTIIQVLVLVSMGVGQIWYLRRWFDSKST 202
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: S4RTT6_PETMA (Transmembrane p24 trafficking protein 3 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RTT6_PETMA) HSP 1 Score: 58.2 bits (139), Expect = 4.710e-6 Identity = 58/255 (22.75%), Postives = 107/255 (41.96%), Query Frame = 3 Query: 36 RADTHTMNALSAHVLLFLLCCVSATAAS-TYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKS-YAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKS---FQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGK 785 R+ TM L L LL +AA T+ +++ A+ CF+ +++ K+ V GGN D+ V+GP ++++ + + A T + +G YEIC SN+ S + + + L + E + +D G + +T + E +KS +Q R+Q TQ AE ++ + S+ ET++L++VG+GQ++ ++ +FS K Sbjct: 17 RSGDRTMERLFRTALALLLHASLLSAAEVTFELKDNAKQCFYEDIDQGVKVTLDFQVITGGNYDVDCRVKGPHD-----SVLYNENRKQYDSYAWTTEQ-----------------------RGTYEICFSNEFSTFTHKTVYFDLQVGE-------------EAPLFRDEGTR------VVALTQMESACVTIHEGLKSVDNYQTQHRLQETQDRHQAEVLNSRVNMWSIGETIILVVVGVGQVMLLKSFFSDK 224
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: A0A152A758_9MYCE (GOLD domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A758_9MYCE) HSP 1 Score: 56.2 bits (134), Expect = 1.540e-5 Identity = 56/243 (23.05%), Postives = 102/243 (41.98%), Query Frame = 3 Query: 75 VLLFLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGR----TKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGT 791 VL+ LL + +T T+ +E + Q CF+ YVE V +GG LDI + D +GN + R T +K R+S AE G Y++C +N+ S AK + + +E+ ++AK T+ + + + ++ +V + + Q+ R + +E + +V S+ E +L+++G+ QI ++RKWF + T Sbjct: 10 VLVVLLSIIDSTWGLTFQVEPKQQECFYNYVEGGKTSLILYQVIRGGLLDIDIRI-----FDPKGNTIFSRLHFDTTMKGRQSFTA------------------------AESGAYKLCFNNEMSRFT-AKVITFTWN--LEEFNPNEYAKGATLNPME---------------HSIQKIERVLQSVVHEQKRLRYREQANRDTSESTNGRVVWWSIGEVAILVVMGVAQIWYLRKWFDSRST 205 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig109.618.1 >prot_E-siliculosus-1a_F_contig109.618.1 ID=prot_E-siliculosus-1a_F_contig109.618.1|Name=mRNA_E-siliculosus-1a_F_contig109.618.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=253bp MNALSAHVLLFLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVback to top mRNA from alignment at E-siliculosus-1a_F_contig109:49017..52234- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig109.618.1 ID=mRNA_E-siliculosus-1a_F_contig109.618.1|Name=mRNA_E-siliculosus-1a_F_contig109.618.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3218bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:49017..52234- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig109:49017..52234- >mRNA_E-siliculosus-1a_F_contig109.618.1 ID=mRNA_E-siliculosus-1a_F_contig109.618.1|Name=mRNA_E-siliculosus-1a_F_contig109.618.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1518bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:49017..52234- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |